Neogale vison (American mink): 122908933
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Entry
122908933 CDS
T08764
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
nvs
Neogale vison (American mink)
Pathway
nvs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122908933 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nvs03032
]
122908933 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
nvs03400
]
122908933 (TOPBP1)
DNA replication proteins [BR:
nvs03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
122908933 (TOPBP1)
DNA repair and recombination proteins [BR:
nvs03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
122908933 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
122908933
NCBI-ProteinID:
XP_044108271
LinkDB
All DBs
Position
6:129898802..129967165
Genome browser
AA seq
1512 aa
AA seq
DB search
MSRNDKEPFLVKFLKSSDNSECFFKALESIKEFQSEEYLQIITEEEALEIKENDRSLYIC
DPFSGIVFDHLKKLGCRIVGPQVVIFCMHHQRCVPRAEHPVYNMVMSDVTVSCTSLEKDK
REEVHKYVQMMGGRVYRDLNISVTHLIAGEVGSKKYLVAANLKKPILLPSWIKTLWEKSQ
EKKIARYTDVNMEDFKCPIFLGCIICVTGLCSLDRKAVQQLTIKHGGQYMGQLKMNECTH
LIVQEPKGQKYECAKRWNVHCVTTQWFFDSVDKGFCQDESIYKTEPRPETKTVPDTSTPT
GQINTVDSRTLSDVSHISNINASYINESICNSVLNSKVEPTLENLENLDVSAFQAPEDLL
DGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYDDELKQFWDKSAHRP
HVVGAKWLLECFSKGYMLPEEPYIHANYQLVEIPVSDQPESKTALLKRNNSLSKKNLAPD
EKHEQADEDLLSQYINNNPTVVEAVKSEVEPFNDSTHISLPEENQSSVTCCLPDTSTVTE
EGLFSQKSFLVLGFSNENESNIANIIRENAGKIVSLQSRIVADYAVVPLLGCEVEATVGE
VVTNTWLVTCIDYQTLIDPKSNPLFMPVPVMAGMTPLEDCVISFSQCAGAEKDSLTFLAN
RLGASVQEFFVRKSNAKKGMFASTHLVLKEPGGSKYEAAKKWNLPAVTISWLLETARMGK
RADESHFLIEKSAKEEQSVETETTNRVNLNPGTPEHPVAHLETHRKTAVTPLDMNRFQSK
AFHAVISQHTRQVSASPPVGQPLQKEPSLHLDTPSKFLSKDKLFKPSFDVKDALAALETP
GGPSQQKRNLSTPLSEVIVRNLKLALANSSRDAVALSASPRLKDAQSKKEEAPKPLHKVV
VCVSKKLSKKQGELNGIAASLGADYRWSFDETVTHFIYQGRPNDTNREYKSVKERGVHIV
SEHWLLECAQEYKHLPESLYPHTYNPKMSLDISTVQDGRVSNSRLLSVDSATKDDEPDHL
PVEENDIDSVATSNKELATSNGGGRSDSKGALTQTLEMRENFQKQLQEIMSATSIVKPQG
QRASLSRSGCNSASSTPDSTRSARSGRSRVLEALRQSRQTVPDVNTEPSQNEQIIWDDPT
AREERARLASSLQWPSCPTQYSELQVDIKKLEDSPSQEALRDSEIAKQAVCDLGSVCVTE
APKPPISEELETPVKDSHLIPTPQAPSIAFPLANPPVAPHPREKIITEETHEDLKKQYIF
QLSSLNPQERIDYCHLIEKLGGLVIEKQCFDPNCTHIVVGHPLRNEKYLASVAAGKWVLH
RSYLEACRTAGHFVLEEDYEWGSSSILDVLTGINVQQRRLALAAMRWRKKLQQRQESGIV
EGAFSGWKVILYVDQSREAGFKRLLQSGGAKVLPGHSVPLFKEATHLFSDFNKLKPDDSG
VNIAEAAAQNVYCLKTEYIADYLMQESPPRVENYCLPEAISFLPNNKEPGPGLSQKRKAP
TEKNKIKRPRVN
NT seq
4539 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaaatgacaaagaaccgtttcttgtgaagtttttaaagtcttcagataattcc
gaatgtttttttaaagcacttgagtcaataaaagagttccaatcagaagaataccttcag
atcattacagaagaagaggcattggagataaaggaaaatgacaggtcactttatatctgt
gacccttttagtggcattgtctttgatcacctcaaaaagcttggctgcagaattgttggc
cctcaagtagtcatattttgtatgcaccaccagcgatgtgtcccaagagctgaacatcca
gtttataatatggttatgtctgatgtaactgtgtcttgtacaagcctggaaaaagataaa
agggaagaagttcataaatatgtacaaatgatgggtggacgtgtatacagagaccttaat
atatcagtaactcaccttattgcaggagaagttggcagcaaaaaatatttagttgctgca
aacctaaagaaacctattttgcttccttcttggattaaaacactttgggaaaagtcacaa
gagaaaaaaatagctaggtatactgatgtaaacatggaagacttcaagtgtcccattttt
cttggttgcattatctgtgtgactggcttgtgtagcttagacagaaaggcagttcagcaa
ctcacaattaagcatggaggtcaatacatgggacaactgaaaatgaatgaatgcacacac
ctcattgtgcaagaaccaaaaggtcaaaagtacgaatgtgccaagagatggaatgtacac
tgtgtgaccacgcagtggttttttgacagtgttgacaaaggtttttgtcaggatgaatcc
atatacaaaacagagccaagaccagaaacaaagactgtgcctgatacttcaactcctact
ggccagatcaacacagttgatagtcgtactctttcagatgtcagccatatttccaacatc
aatgcaagttatataaatgaatcgatatgtaattcagttcttaatagcaaagtggagcct
acacttgaaaatctggaaaatctggatgtcagtgcatttcaagcacctgaagatttatta
gatggttgtcggatctatctttgtggttttagtggcagaaagcttgataaactgagaagg
cttattaacagtggaggtggagttcgttttaatcagctcaatgaagatgtaactcatgtt
atcgtgggagattatgatgatgaattgaagcagttttgggataaatcagcccacaggcct
catgtagtaggagcaaaatggttgctagagtgttttagtaaaggttacatgcttcctgaa
gagccatatatccatgctaactaccagctagtggaaattccagtttcagatcagcctgag
agtaaaacagctcttttaaaaaggaacaacagcttgtctaagaaaaacttggctcctgat
gaaaagcatgaacaagctgatgaagatctgctctctcagtacataaataataacccaaca
gtagttgaagctgtgaagtctgaagttgagccctttaatgactctactcatatttctctg
ccagaagaaaaccagtcttctgtcacttgttgcctccctgacacttctacagttaccgaa
gaaggtttatttagccaaaagagtttccttgttttgggctttagtaatgaaaatgaatct
aatattgcaaatatcataagagaaaatgctggaaaaatcgtgtcccttcagagcagaatt
gttgctgattacgctgtggttcctctgctggggtgtgaagtagaagcaactgtgggagaa
gttgtcacaaatacgtggctggtaacctgtatagactatcaaactttaattgatccaaag
tcaaatcctctcttcatgccagtcccagtgatggcaggaatgactcctttggaggattgt
gttatttcattcagccagtgtgcaggagcagaaaaagattcattgacattcttagcaaat
cgccttggagcaagtgttcaagaattctttgttcgcaaatcgaatgcaaagaaaggcatg
tttgccagtacacatcttgtattgaaagaaccaggtggttctaaatatgaagctgccaag
aagtggaatttaccagcagtcaccatatcttggctgttggagactgctagaatgggaaag
agagcagatgaaagccattttctgattgaaaagtctgctaaagaagaacaaagtgtggaa
actgaaacaacaaacagggtgaatctaaacccaggtactccagagcatcctgttgcacac
ctggaaactcataggaaaacagccgtcacgcctttagatatgaaccgctttcagagtaaa
gctttccatgctgtgatctcacaacacaccagacaggtttcggcctccccaccagtggga
caaccacttcagaaagagccctccttacatctggatacaccatcaaaatttctgtccaag
gacaaactcttcaagccttcctttgatgtgaaggatgcacttgcagccttggaaactcca
ggaggtcctagccagcagaaaaggaatctgagtacgccactttcagaagtcattgtcaga
aacttgaaacttgctttggcaaatagctctcgagatgctgttgctttgtctgccagccct
cggctgaaggacgcccaatcgaagaaggaagaagcccccaaaccacttcacaaggtagtg
gtatgtgtgagtaagaaactcagtaagaaacagggtgaactgaatgggattgcagcctct
ctaggagcagattacagatggagttttgatgaaacagtgactcatttcatttatcaaggc
cgaccaaatgacactaaccgagagtataaatctgtaaaagaaagaggagtacacattgtt
tcagagcactggcttttagaatgtgcacaagagtataaacaccttcctgaatctctttat
ccacatacttacaatcccaaaatgagcttggatatcagtacagtgcaagatggcagagtc
tctaatagtcgactactctcagtggattcggcaacaaaggatgatgagccagatcatttg
cctgtagaagaaaacgatatagacagtgtggccaccagtaacaaagaattagcaacatca
aatggcggtggaaggagtgactctaaaggagctctgacacagaccttggagatgagagag
aactttcaaaagcagctgcaggagataatgtctgcaacatcaatagtgaaaccccaaggg
cagagggcttctctttcaagaagtggttgtaacagtgcttcttcaacgcctgatagcact
cgctctgcccgcagtgggcgaagcagagtcctggaagcactgaggcagtcacgtcaaaca
gtacctgatgtcaacacagagccctcccagaatgaacagatcatttgggatgacccaaca
gccagggaggagagagcaagacttgccagcagtctgcagtggcctagttgtcccacacag
tattcagagcttcaggttgacattaaaaaactggaggactctccttcccaggaggcttta
cgtgactcagaaattgctaaacaggctgtgtgtgatctcggaagcgtgtgtgtgactgaa
gctccaaaacccccgatctctgaagaactggaaacaccggtaaaagacagccacctgatc
cctacacctcaagcgcccagtattgccttccccctcgccaacccaccagtggctccacac
cctagagagaagattataacagaggaaacacatgaagatttaaaaaaacagtatatattt
cagttgtcatctctgaatcctcaagaacgtattgattattgtcatctgattgaaaaacta
ggtggactagtaatagagaaacagtgctttgatcccaattgcacacacattgttgtggga
catccacttcgaaacgagaagtatttagcctcagtggcagctgggaaatgggtgcttcat
cgctcctatctggaagcatgccggactgctggacacttcgtactggaagaagactatgaa
tggggaagtagttccatacttgatgttttgactggaatcaacgttcaacaacgaagacta
gcacttgcagcaatgaggtggaggaagaaactccagcaaagacaagaatcaggcattgtt
gagggggcatttagtgggtggaaggttatcttatatgttgaccaatcccgagaagcagga
ttcaaacgccttcttcagtcaggaggagcaaaggtactgcctggtcattctgtaccttta
tttaaagaagccacacatctcttttctgacttcaataaactgaaaccagatgactcaggg
gttaatatagcagaagctgcggcccaaaatgtgtactgcttgaaaacagagtacattgct
gattatttgatgcaggaatcccctcctcgagtagaaaattactgtctcccagaagcaatt
tcgtttcttccaaataataaggaacctgggcctggattatcacagaagaggaaagctcct
acagagaaaaataaaatcaaaagacctagagtaaactaa
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integrated database retrieval system
