Neogale vison (American mink): 122909349
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Entry
122909349 CDS
T08764
Symbol
PBRM1
Name
(RefSeq) protein polybromo-1 isoform X1
KO
K11757
protein polybromo-1
Organism
nvs
Neogale vison (American mink)
Pathway
nvs03082
ATP-dependent chromatin remodeling
nvs05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122909349 (PBRM1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
122909349 (PBRM1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nvs03021
]
122909349 (PBRM1)
03036 Chromosome and associated proteins [BR:
nvs03036
]
122909349 (PBRM1)
Transcription machinery [BR:
nvs03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122909349 (PBRM1)
Chromosome and associated proteins [BR:
nvs03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
122909349 (PBRM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
122909349
NCBI-ProteinID:
XP_044109338
LinkDB
All DBs
Position
6:202907338..203034654
Genome browser
AA seq
1725 aa
AA seq
DB search
MRRLAFRGAGCALVKLKKLDSMGSKRRRATSPSSSVSGDFDDGHHSVSTPGPSRKRRRLS
NLPTVDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQ
KLKMEEYDDVNLLTADFQLLFNNAKAYYKPDSPEYKAACKLWDLYLRTRNEFVQKGEADD
EDDDEDGQDNQGTVTEGSSPSYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPD
YYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKI
FYMKKAEIEHHEMAKSSLRIRTPSNLATARLTGPSHSKGSLGEERNPTSKYYRNKRTVQG
GRLSAITMALQYGSESEEDAALAAARYEEGESEAESITSFMDVSNPFYQLYDTVRSCRNN
QGQLIAEPFFHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENA
KRYNVPNSAIYKRVLKLQQVMQAKKKELARRDDIEDGDSMISSATSDAGSAKRKRNTLDS
EMLGLRRLSSKKNIRKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILE
PMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHILEKLLKDKRKE
LGPLPDDDDVASPKLKLSRKSGISPKKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIF
LRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESL
IYKDALVLHKVLLETRRDLEGDEDSHVPNVTLLIQELIHNLFVSVMSHQDDEGRCYSDSL
AEIPAVDPNFPNKPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERARRMNRTDSEIYED
AVELQQFFIKIRDELCKNGEILLSPALSYTTKHLHNDVEKEKKEKLPKELEEDKLKREEE
KREAEKSEDSSGAAGLSGLHRTYSQDCSFQNSMYHVGDYVYVEPAEASLQPHIVCIERLW
EDSAGEKWLYGCWFYRPNETFHLATRKFLEKEVFKSDYYNKVPVSKILGKCVVMFVKEYF
KLCPENFRDEDVFVCESRYSAKTKSFKKIKLWTMPISSVRFVPRDVPLPVVRVASVFANA
DKGDDEKNTDNSEDSRTEDNFNLEKEKEDVPVEMSNGEPGCHYFEQLRYNDMWLKVGDCV
FIKSHGLVRPRVGRIEKVWVRDGAAYFYGPIFIHPEETEHEPTKMFYKKEVFLSNLEETC
PMTCILGKCAVLSFKDFLSCRPTEIPENDILLCESRYNESDKQMKKFKGLKRFSLSAKVV
DDEIYYFRKPIVPQKEPSPLLEKKIQLLEAKFAELEGGDDDIEEMGEEDSEVIEPPSLPQ
LQTPLASELDLMPYTPPQSTPKSAKGSAKKEGSKRKINMSGYILFSSEMRAVIKAQHPDY
SFGELSRLVGTEWRNLETAKKAEYEERAAKVAEQQERERAAQQQQPSASPRAGTPVGALM
GVVPPPTPMGMLNQQLTPVAGMMGGYPPGLPPLQGPVDGLVSMGSMQPLHPGGPPPHHLP
PGVPGLPGIPPPGVMNQGVAPMVGTPAPGGSPYGQQVGVLGPPGQQAPPPYPGPHPAGPP
VIQQPTTPMFVAPPPKTQRLLHSEAYLKYIEGLSAESNSISKWDQTLAARRRDVHLSKEQ
ESRLPSHWLKSKGAHTTMADALWRLRDLMLRDTLNIRQAYNLENL
NT seq
5178 nt
NT seq
+upstream
nt +downstream
nt
atgaggagactggcttttcgaggcgctggttgtgctctggtaaagctgaagaaattggat
tccatgggttccaagagaagacgagctacttccccgtccagtagtgtcagcggggacttt
gatgacgggcaccattctgtatccacaccaggtccaagcaggaaaaggaggagactttcc
aatcttccaactgtagatcctattgctgtatgccatgagctgtacaataccatccgagac
tataaggatgagcagggcaggctcctctgtgagctcttcattagggcaccaaaacgaaga
aatcaaccagactattatgaagtggtttctcagcccattgatttgatgaaaatccaacaa
aagctaaaaatggaagagtacgatgatgttaatctgctgacggctgacttccagctgctt
tttaacaatgcaaaggcctattacaagccagattctcctgaatataaagctgcttgcaaa
ctctgggatttgtaccttagaacaagaaatgagtttgttcaaaaaggagaagcagatgac
gaagatgatgatgaagatgggcaagacaatcaaggcacagtgacagaaggatcttctcca
agttacttgaaggagatcctggagcagcttcttgaagccatagttgtagccacaaatcca
tcaggacgtctcatcagtgaactttttcagaaactgccttctaaagtgcaatatccagac
tattatgcaataattaaggagcctatagatctcaagaccattgctcagaggatacagaat
ggaagctacaagagtattcatgcaatggccaaagatatagatctcctagcaaaaaatgcc
aaaacttacaatgagcctggttctcaagtgttcaaggatgcaaattctattaaaaaaata
ttttatatgaaaaaggcagaaattgaacatcatgaaatggctaagtcaagccttcgaata
aggactccatcaaatttggctacagccaggctgacaggtccttctcacagtaaaggcagc
cttggtgaagagagaaatcccactagcaagtattaccgtaataaaagaacagtccaaggc
ggtcgtttgtcagcaattaccatggcacttcagtatggctcagaaagtgaagaagatgct
gctttagctgctgcacgttatgaagaaggagaatcggaagcagagagcattacttcattt
atggatgtttcaaatcctttttatcagctatatgacacagttaggagttgtcggaataac
caagggcagctaatagctgaaccttttttccatttgccttcaaagaaaaaataccctgat
tattatcagcaaattaaaatgcctatatccctacagcagatcagaacaaaactaaagaac
caagaatatgaaactttagatcatttggagtgtgatctgaatttaatgtttgaaaatgcc
aaacgctataatgttcccaattcagccatctacaagcgagttctgaaattgcagcaggtc
atgcaggcaaagaagaaggagcttgctaggagggacgacattgaggatggagacagcatg
atttcttcagccacctctgatgctggtagtgccaaaagaaaaaggaacactcttgacagt
gagatgttgggtctcaggaggctctccagtaaaaagaacataagaaagcaacgaatgaaa
atcttattcaatgttgttcttgaagctcgtgagccaggttcaggcagaagactttgtgat
ctgtttatggttaaaccatccaaaaaggactatcctgactattataaaatcatattggag
ccaatggacttgaaaataattgaacataacattcgcaacgacaagtatgcaggggaagag
ggaatgatagaagacatgaagctgatgttccggaatgccaggcactacaatgaggagggc
tcccaggtgtacaacgacgcacacatcctggagaagttactcaaggataaaaggaaagag
ctgggcccgctgcccgatgacgacgatgtggcttctcccaaactcaagctgagtaggaag
agtggaatttctcctaaaaaatcaaaatacatgactccaatgcagcagaaactaaatgaa
gtctatgaagctgtaaagaactatactgataagaggggtcgccgcctcagtgccatattt
ctgaggcttccctctagatccgagctgcctgactactatctgaccattaaaaagcccatg
gacatggaaaaaattcgaagtcacatgatggccaacaaataccaagatatagactccatg
gttgaggacttcgtcatgatgtttaacaatgcctgtacctacaatgagcccgaatctttg
atctacaaagatgcccttgtcctgcacaaggtcctgcttgaaactcggagagacctggag
ggagatgaggactctcatgtcccaaatgtgaccttgctgattcaagaacttattcacaat
ctttttgtgtcagtcatgagtcatcaggatgacgaaggaagatgctacagtgattcctta
gcagaaattcctgcagtggatcccaacttcccaaacaaacctcctcttacttttgacata
attagaaagaatgttgaaaataatcgctaccggcggctcgatttatttcaagaacatatg
tttgaagtcttggaaagggcacgaagaatgaatcggacagactccgaaatctacgaggat
gcggtagagctgcagcagttttttattaaaatccgtgacgaactttgcaaaaacggagag
atcctgctttcaccagcactcagctataccacaaagcatttgcataatgatgtggagaaa
gagaagaaggaaaaattgccaaaagaactagaggaggataaactaaaacgagaagaagaa
aaaagagaagctgaaaagagtgaagactcctcaggcgccgcaggcctctccggcttacac
cgcacgtacagccaggactgcagctttcagaacagcatgtaccacgttggagactacgtg
tacgtggagcccgcagaggccagcctgcagccgcacatcgtctgcattgagaggctttgg
gaagattctgctggtgaaaaatggttgtatggctgttggttttatcggccaaatgaaaca
ttccatctggctacacggaaatttctagaaaaagaagtttttaagagtgactattataat
aaagttcccgttagtaaaattctaggaaaatgtgtggtcatgtttgtcaaggaatacttc
aaattgtgcccagaaaactttcgagatgaggatgtttttgtctgcgaatcacggtattct
gccaaaaccaaatcttttaagaaaattaaactgtggaccatgcccatcagttcagtgaga
tttgtccctcgggatgtgcccttgcctgtggtccgagtggcgtctgtatttgcaaatgca
gataaaggggatgatgagaagaacacagacaactcagaggacagtcgaactgaagacaat
tttaacttggaaaaggagaaagaagatgtccctgtggaaatgtcaaatggcgaaccaggt
tgccactactttgagcagctccgttataatgatatgtggctaaaggttggcgactgtgtc
ttcatcaagtcccatggcctcgtgcgccctcgagtgggcagaattgaaaaggtatgggtc
cgagatggagctgcatatttttatggccccatcttcattcacccagaagagacggaacat
gagcccacaaaaatgttctacaaaaaagaagtatttctgagtaatctggaagaaacctgc
cccatgacatgtattctgggaaaatgtgctgtgttgtcattcaaggacttcctctcctgc
aggccaactgaaataccagaaaatgacattctgctttgtgagagccgctacaacgagagt
gacaaacagatgaagaaattcaagggactgaagaggttttcactctctgctaaagtggta
gatgatgagatttattacttcagaaaaccaattgttcctcagaaagagccctcgcctttg
ttggaaaagaagatccagttgctggaagctaaatttgctgagttagaaggtggagatgat
gatattgaagagatgggagaagaggatagtgaagtcattgagcctccttctctacctcaa
cttcagacccccctggccagtgaactggatctcatgccctacacacccccacagtctacc
ccaaagtctgccaaaggcagtgcaaagaaggaaggctccaaacggaaaatcaacatgagt
ggctacatcctgttcagcagtgagatgagagctgtgattaaggcccagcacccagactac
tcttttggggagctcagccgactggtggggacagaatggagaaaccttgagacagccaag
aaagcagaatatgaagagcgggcagctaaagttgctgagcagcaggagagagagcgagca
gcacagcaacagcagccgagtgcttctccccgagcaggcacccctgtgggggctctcatg
ggggtggtgccaccaccaacaccaatggggatgctcaatcagcagttgacacctgttgca
ggcatgatgggtggctatccgccaggccttccacctttgcagggcccagttgatggcctt
gttagcatgggcagcatgcagccacttcaccctggggggcctccaccccaccatcttccg
ccaggtgtgcccggcctcccgggcatcccaccaccgggtgtgatgaaccaaggagtggcc
cctatggtggggactccagcaccaggcggaagtccgtacggacagcaggtaggagttttg
gggcctccagggcagcaggcaccacccccatatcctggcccacatccagctggcccccct
gtcatacagcagccgacaacgcccatgtttgtggctcccccaccgaagacacagcggctt
ctccactcagaggcctacctgaaatacatcgaaggcctcagtgctgagtcaaacagcatt
agcaagtgggaccaaaccctggcagctcgaagacgcgatgtccatttgtcaaaagaacag
gagagccgcctcccctctcactggctgaaaagtaaaggggcccacactaccatggcagat
gccctctggcgccttcgggatttgatgctccgagacaccctcaacattcgccaagcatac
aatctagaaaacctttaa
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integrated database retrieval system
