Neogale vison (American mink): 122911422
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Entry
122911422 CDS
T08764
Symbol
SKIV2L
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
nvs
Neogale vison (American mink)
Pathway
nvs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122911422 (SKIV2L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nvs03019
]
122911422 (SKIV2L)
Enzymes [BR:
nvs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122911422 (SKIV2L)
Messenger RNA biogenesis [BR:
nvs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122911422 (SKIV2L)
mRNA degradation factors
3'-5' decay
Ski complex
122911422 (SKIV2L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
HAS-barrel
DUF3516
Motif
Other DBs
NCBI-GeneID:
122911422
NCBI-ProteinID:
XP_044112026
LinkDB
All DBs
Position
1:complement(121522306..121533094)
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AA seq
1246 aa
AA seq
DB search
MMETERLVLPPPDPLDLPLRPVELGCTGRWELLNVPGAPESTLPHGLPPCAPDLQQEAEQ
LFLSSPAWLPLHGVEHSARKWQRKMDPWSLLATQGAPVPSDLQAQRHPTTGQILGYKEVL
LENTNLSATTSLSLRRPPGPISQSLWGNPTQYPFWPGGMDEPTITDLSTREEAEEEIDFE
QDLLTVPPGFKKGVDFTPKDHPAPASGLLSLSRLLEPLDLGGGDEDETEAVGQPGIPRGD
TVAASPCSASMARASSLEDLVLKETSPAVSPPEPPKPLPQEQWAIPVDVTSPVGDFYRLI
PQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTS
PIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWV
IFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIST
VARPVPLEHYLFTGNSPKTQGELFLLLDSRGTFHTKGYYAAVEAKKERMSKHAQTFGAKQ
PTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLNSLDLTTSSEKSEI
HLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLF
ATETFAMGVNMPARTVVFDSMRKHDGSAFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCK
GRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSK
AHEQALAELTKRLGALEEPDTTGQLVDLPEYYSWGEELTETRSLIQRRIMESVNGLKSLS
AGRVVVVKNQEYHNTLGVILQVSSNSTSRVFTTLVLCDKPVSEDPQERAPATPSVPYPDD
LVGFKLFLPEGPCDHTVAKLQPGDVAAITTKVLRVNGEKILEDFSRRQQPKFKKDPPIAA
VTTAVQELLRLAQAYPAGPPTLDPVNDLQLKDVSVVEGGLRARKLEELIGGAQCVHSPRF
SAQYLKLQERVQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEVGTVKLAGRV
ACAMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPGEQLPSTLKQGVERVRA
VAKRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCI
QRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaccgagcgactcgtgctacctcctccagatcccctggatctgccccttcgg
ccggtggagctgggatgcacggggcgctgggagctgctcaatgtgcctggggcaccagag
agcacccttccccacggcctccctccgtgtgccccagatctgcagcaggaagcagaacag
ctgtttttgtcatctccagcctggttgcctctgcatggtgtggagcactccgcccgaaaa
tggcagaggaaaatggatccctggtcgctcttggccacacagggggccccagtgccctcc
gaccttcaggcccagagacacccaaccacaggccagattctgggctacaaagaggtcctg
ttggagaatacgaacctatcagccaccacctccttgtctcttcgccggcccccagggccc
atctcccagtccctgtgggggaatccaacacagtaccctttctggccaggtggaatggat
gagcccaccataacagatctgagcactcgggaggaggctgaggaggagatagactttgag
caagatcttcttactgttccgcctggcttcaaaaaaggtgtggactttacaccaaaggat
cacccagctccagcttctggcttgctcagcctcagccgtttgctggagcctctggatttg
ggtgggggagacgaggatgaaactgaggcagtgggacagccaggaattcccagaggggac
acggtggccgcctccccctgcagtgcttccatggcccgagcaagcagcttggaggaccta
gtgttgaaggaaacatccccagctgtatcccctccagagccccccaaacccctgcctcag
gagcagtgggcgattcctgtggatgtcacctcccctgttggtgatttctaccgcctcatt
ccccagccggccttccagtgggcatttgagccggatgtgttccagaagcaggccatcctg
cacttggagcggcatgactctgtcttcgttgcggctcacacatctgcggggaagacggtt
gtggctgaatatgccattgcccttgcccagaaacacatgactcgcaccatttacacatcg
cccatcaaggccctgagcaaccagaagttccgagactttcgaaacacattcggggatgtg
ggattgctcactggggatgtgcagctgcacccagaggcctcctgcctcattatgacaaca
gagatccttcgctccatgctgtacagtggctcagatgtcatccgggacctggagtgggtc
atctttgatgaggttcactacatcaatgatgctgagcgtggggttgtgtgggaggaggtg
ctcatcatgctccctgaccacgtctccatcatccttctgagtgccaccgtccccaatgcc
ctcgagtttgccgactggatcgggcgactgaaacgtcgccagatatatgtgatcagcact
gttgcgcgccccgttcctctggagcattatctcttcacggggaacagccccaagacccag
ggggagctctttctgttgctggactcccgaggcaccttccacacaaaggggtactatgct
gctgtggaggccaagaaggagcggatgagcaaacatgcccagacctttggggccaagcag
cccactcatcagggggggcccgcacaggaccgtggtgtatacctgtcccttctggcctcc
ctccgcacccgcgcacagctgcctgtggtggtgttcaccttctcccggggtcgctgtgat
gagcaagcctcgggcctcaactcccttgacctcaccacaagttcagagaagagtgagatt
cacctcttcctgcagcgctgccttgcccgcctccgtggctctgaccgccagctgccccag
gtcctgcatatgtccgaacttctgcaccgcggcctgggtgtgcaccacagtggcatcctg
cctattcttaaagagatcgtggagatgcttttcagtcgaggcctggtcaaggtcttgttt
gccacagagacttttgccatgggtgtaaatatgcctgcccgaacagtggtgtttgactcc
atgcggaagcatgatggctccgccttccgggacctgctccctggagagtacgtgcagatg
gcgggccgggcaggccggaggggcctggaccccaccggcacagtcatcctgctctgcaag
ggccgtgtgcctgagatggcagacctgcaccgcatgatgatggggaagccatcacagctg
cagtcccagttccgactcacatataccatgatcctgaacctgctgcgggtggacgccctc
agggtggaggacatgatgaagagaagcttctccgagtttccatcccgcaaggacagcaag
gctcatgaacaggctctagctgaactgaccaagagactaggggccttggaggaacctgac
acgactggccaattggttgacctgcctgagtattacagctggggggaggaactgacagag
acccggagcctgatccagcggcgcatcatggagtctgtgaatgggctcaagtctctctca
gcgggaagggtggtggtcgtgaagaatcaggagtatcacaacacattgggtgtgatcctg
caggtctcctcgaactccaccagcagggtatttacaaccctggtcttgtgtgataagcct
gtgtctgaggacccacaggagagggcaccagccaccccaagtgtgccctaccccgatgat
cttgtgggattcaagctgttcctgcctgaaggaccttgtgaccacacagtggccaagctc
cagccaggagatgtggctgccatcaccaccaaggttctccgggtgaatggggagaagatc
ttggaggacttcagcaggaggcagcaaccaaaattcaagaaggatcctcccattgcagct
gtgaccactgctgtgcaggaactgctgcgtctggctcaggcctacccagcgggaccccct
acccttgaccctgtcaatgacctgcagctcaaagatgtatcagtggtggagggggggctc
cgagcccggaagctggaggagctgattggcggtgctcagtgtgtgcacagccctcgtttc
tctgcccagtacctgaagctgcaggagcgtgtgcagatacagaaggagatggagcgacta
cgcttcctgctgtcggatcagtcactgctgctgctcccagagtatcaccagcgagtagag
gtgctccgaaccctgggttatgtagacgaggtgggcacggtgaagctggcagggcgggtg
gcttgtgccatgagcagccatgagctgctcctcactgagctcatgtttgacaatgctctg
agtgccctgcggccggaggagattgcagccctgctctccggcctggtctgccagagccct
ggggacccaggggagcagctcccaagcaccctcaaacagggagttgaacgtgtccgggct
gtggccaagcggattggtgaggtccaggtggcctgtggcttgaaccagacagtggaggaa
tttgtgggggagctgaattttgggcttgtcgaggttgtgtacgagtgggcccggggcatg
cccttctccgagctggcggggctctcggggacccctgagggcctggtggtccgctgcatc
cagcgcctggctgagatgtgtcgctcactgaggggggcagcccgccttgtaggtgagcct
gtgttaggtgccaagatggagacagcagctaccctgctacggagggacatcgtctttgca
gccagcctgtacactcagtga
DBGET
integrated database retrieval system
