Neogale vison (American mink): 122911887
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Entry
122911887 CDS
T08764
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
nvs
Neogale vison (American mink)
Pathway
nvs03030
DNA replication
nvs03410
Base excision repair
nvs03420
Nucleotide excision repair
nvs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122911887 (LIG1)
03410 Base excision repair
122911887 (LIG1)
03420 Nucleotide excision repair
122911887 (LIG1)
03430 Mismatch repair
122911887 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nvs03032
]
122911887 (LIG1)
03400 DNA repair and recombination proteins [BR:
nvs03400
]
122911887 (LIG1)
Enzymes [BR:
nvs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
122911887 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
122911887 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
122911887 (LIG1)
DNA replication proteins [BR:
nvs03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
122911887 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
122911887 (LIG1)
DNA repair and recombination proteins [BR:
nvs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
122911887 (LIG1)
NER (nucleotide excision repair)
Other NER factors
122911887 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
122911887 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
PucR
DDR
Motif
Other DBs
NCBI-GeneID:
122911887
NCBI-ProteinID:
XP_044112931
LinkDB
All DBs
Position
7:51989000..52026085
Genome browser
AA seq
915 aa
AA seq
DB search
MQRSIMSFFYPKNEGKVKKPEKETSNSVREMEPPPKVALKERNGEVPESDSPVKRPGRKV
ARVLGSEGEEEDEALTPSKGQKPAPGSPQVSPPSPVTLPESSPSLSSTSPVDISPAGIPK
RRTARKQLPKRTIQDVLEEQAKDEDREAKRKKEEEAETPPESLTEPEVTQKKEAEGGDQP
VTSPEHPETLADSLPDSTSELEVARKQEAQEEDPAKPPPRAPKTVSSFFAPRKPATKKEG
KEEVPGTPRQEEAKGPPDPPSYNPAKNNYHPIDDACWKPGQKVPYLAVARTFEKIEEVSA
RLRMVETLSNLLRSVVALSPPDLLPILYLSLNRLGPPQQGLELGVGDGVLLKAVAQATGR
QLESVKAEAAEKGDVGLVAESSRSTQRLVLPPPALTAAGVFAKFRDIARLAGSASTAKKM
DIIKGLFVACRHSEARYIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPPGIVDAG
KGRTAEARKTWLEEQGMILKQTFCEVPDLDRLIPVLLEHGLERLPEHCKLSPGVPLKPML
AHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTSKYPDIISR
IPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLIY
LNGQSLVREPLSRRRQLLRENFVQTEGEFVFATSLDTKDTEQIAEFLEQSVKDSCEGLMV
KTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAAYD
EESEELQAICKLGTGFSDEELEEHHHRLQALVLPSPRPYVRVDGAVAPDHWLDPSAVWEV
KCADLSLSPIYPAARGLVDGEKGISLRFPRFIRVREDKKPEEATTSAQVASLYRKQSQIQ
NQQGADLDSDPEDFY
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatcatgtcatttttctaccccaagaatgagggcaaagtgaaaaagcca
gagaaggagacctccaacagcgtcagagagatggagccgcctccaaaggtggcactgaag
gagcggaatggagaggtgcctgagagtgattctccagtgaagaggccagggcggaaggtg
gcccgggtcctgggcagtgaaggggaggaggaggacgaggccctcacgccctccaaaggc
cagaagcctgccccgggctctccacaagtctcccctcctagccctgtcacattgcccgag
agcagcccttccctctccagcacctctcctgtggacatctccccagcagggatcccaaag
cggcggacggctcggaagcagcttcctaagcggacaatccaggatgtcctggaggagcag
gccaaggacgaggacagagaggccaagaggaagaaggaggaagaagctgagaccccacca
gaaagcctcacagagcctgaagtgacccaaaagaaagaagcagagggaggggaccagccc
gtgacgtcccctgagcacccagagaccttggcagattccctgccggacagcacctcagag
cttgaggtggccaggaagcaggaggctcaggaggaggacccggccaagccgccccccaga
gctcccaagacggtcagcagcttcttcgccccccggaaaccagcaaccaagaaagaaggg
aaagaagaggtacctggcactccaagacaggaggaggccaagggacccccggaccccccc
agctacaatcctgccaagaacaactaccatcccatcgacgacgcgtgctggaagccaggc
cagaaggttccttacctggctgtggcccggacctttgagaagattgaggaagtttctgct
cggctccggatggtagagacgctgagcaacttgctgcgttctgtggtggctttgtcccct
ccagacctcctccccatcctctacctcagcctcaaccgcctcgggccgccccagcagggc
ctggagcttggtgttggtgacggcgtcctcctcaaggcagtggcccaggccacgggacgg
cagctggagtctgtcaaggccgaggcagccgagaagggtgacgtggggctggtggcggag
agcagccgcagcacccagagactcgtgctgcccccgcccgctctcaccgccgccggagtc
ttcgccaagttccgagacattgcccggctggccggcagtgcttccacagccaagaagatg
gacatcatcaaaggcctatttgttgcctgccgccactcagaagcccgatacatcgccaga
gccctgagcggacggctgcgtctcgggctagcagagcagtcggtgctggccgccctcgcc
caggccgtgagcctcacgccccctggccaagaattccccccgggcattgtggatgctggg
aagggcaggacagcagaggcccgaaagacgtggctggaggagcagggcatgatcctgaag
cagacattctgcgaggtgcccgacctggaccggctcatccccgtgctgctggagcatggc
ctggagcgcctcccagagcattgcaagctgagcccaggggttcccctgaaaccgatgctg
gcgcaccccacccgcggagtcagcgaggtcctgaaacgcttcgaggaggcagctttcacc
tgcgagtacaaatatgatgggcagagggcacagatccatgtcctggaaggcggggaggtg
aagatcttcagcaggaatcaggaagacaataccagcaagtacccggacatcatcagccgc
atccccaagattaaactcccatcagtcacatccttcatcctggacacagaagccgtggct
tgggaccgggaaaagaagcagatccagccattccaagtgcttaccacccgcaaacgcaag
gaggtggacgcagcagaaatccaagtgcaggtgtgtctgtatgccttcgacctcatctac
ctcaatggacagtccctggtgcgcgagccactttcccgacgccggcagctgctccgggag
aacttcgtgcagacggagggcgagtttgtcttcgccacctccctggacaccaaggacacg
gagcagatcgccgagttcttggagcagtctgtgaaagactcctgcgaggggctgatggtg
aaaaccctggatgtcgacgccacctacgagatcgccaagaggtcacacaactggctcaag
ctgaagaaggactacctcgatggcgtgggcgacaccctggacctcgtggtgatcggcgcc
tacctgggccgtggcaagcgggccggccgctatgggggcttcctgctggctgcctacgac
gaggagagtgaggagctccaggccatatgcaagctcggaaccggcttcagtgacgaggag
ctggaagagcaccaccacaggctccaggccctggtgctgcccagcccgcgcccctatgtc
cgggtggatggtgccgtggcccctgaccactggctggaccccagcgccgtgtgggaggtg
aaatgcgctgacctgtccctgtcccccatctaccccgctgcccggggcctggtggatggt
gagaaggggatctcccttcgcttccctcggtttatccgcgtccgtgaagacaagaagcca
gaggaggccaccaccagcgcccaggtggcctcgctgtacaggaagcagagtcagattcag
aatcagcagggcgcggacctggactccgacccagaagatttctactag
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