Neogale vison (American mink): 122911927
Help
Entry
122911927 CDS
T08764
Symbol
SYMPK
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
nvs
Neogale vison (American mink)
Pathway
nvs03015
mRNA surveillance pathway
nvs04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122911927 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
122911927 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nvs03021
]
122911927 (SYMPK)
03019 Messenger RNA biogenesis [BR:
nvs03019
]
122911927 (SYMPK)
Transcription machinery [BR:
nvs03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122911927 (SYMPK)
Messenger RNA biogenesis [BR:
nvs03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
122911927 (SYMPK)
U7-dependent histone pre-mRNA processing factors
122911927 (SYMPK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cnd1
Cohesin_HEAT
Motif
Other DBs
NCBI-GeneID:
122911927
NCBI-ProteinID:
XP_044113015
UniProt:
A0A8C7ATI8
LinkDB
All DBs
Position
7:53494563..53532164
Genome browser
AA seq
1276 aa
AA seq
DB search
MAGSSGDSVTRRSVASQFFTQEEGPGIDGMTTSERVVDLLNQAALITNDSKITVLKQVQE
LIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRD
ENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAADIILLLDSDNDGIR
THAIKFVEGLIVTLSPRMADSEVPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLL
KFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKN
LKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMPSGKDARKRPRDDSDSTLKKM
KLEPNLGEDDEDKDLEPGPSGTSKASAQISGQSDTDITAEFLQPLLTPDNVANLVLISMV
YLPEAMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKQCKEEPKEEK
AVKPESVLIKRRLSAQGQAISVVGSLGAMSALEEEAPQAKRRPEPIIPVTQPRLAGAGGR
KKIFRLSDVLKPLTDAQVEAMKLGAVKRILRAEKAVACSGAAQVRIKILASLVTQFDSGL
KAEVLSFILEDVRARLDLAFAWLYQEYNAYLAAGASGALDKYEDCLIRLLSGLQEKPDQK
DGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTLRDLIFKRPSRQFQYLHVLLDL
SSHEKDKVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAA
PWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNSPE
LLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEK
KEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHNIDSVKCDMK
SIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNIL
SRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKCPELREPLLAHVR
SFTPHQQAHIPNSIMTILEASGKQEPEAKEVPAGPLEEDDLEPLALAPAPAPRPPQDLIG
LRLAQEKALKRQLEEEQKLKPGGVGAPSSSSSSSSSSSSSTRPGPPQPEEAIDFREEGPE
CETPAIFISMDDDSGLTEAALLDSSLEGPLPKEAAGGLTSKEERSPQTLTPAGEDTMKTP
SPAAEESGEPEIKGNS
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcagcagtggcgacagtgtcactaggcggagcgtggcatcacagttcttcaca
caagaggaggggccaggcatcgatggcatgaccacctcagagagagttgtggatctcctg
aaccaggcagcactaatcaccaatgattcaaagatcacagtactcaagcaggtccaagaa
ttgatcatcaacaaagatcctacactactagacaacttcctggatgagatcatcgctttc
caagcagacaagtcgatcgaagtgcgcaaatttgtcattggcttcatcgaggaggcatgc
aaacgagacattgagttactgctgaaactgattgcgaacctcaacatgctcttgagggac
gagaatgtgaatgtggtgaagaaggccatcctcaccatgacccagctctacaaggtggcc
ctgcagtggatggttaagtcacgagtcatcagtgagctccaagaggcctgctgggacatg
gtgtctgccatggctgcggacatcattctgttgctggattctgacaatgacggcatccgc
acccacgccatcaagtttgtggagggccttattgtcaccttgtcaccccgcatggctgac
tcagaggtgccccgacgccaggagcatgacatcagcttagaccgcatccctcgtgaccac
ccgtatatccaatacaatgtgctgtgggaagaaggcaaggcagccttggagcagctgctc
aagttcatggtgcaccccgccatctcctccatcaacctgaccacagcgctgggctccctt
gccaacatcgcccgccagaggcccatgttcatgtcagaggtgatccaggcctatgaaacc
ctgcatgccaacctgcccccgacgctggccaaatctcaggtgagcagtgtgcgcaagaac
ctcaagctgcacctgctgagtgtcctgaagcacccagcctccctggagtttcaggcgcag
atcaccaccctgctggtggacctgggcacgccccaggctgagatcgcccgcaacatgccc
agtggcaaggatgcccgcaagcggccccgagacgactctgattccacgctcaagaagatg
aagctggagcctaacctgggggaagatgatgaggacaaggacttggagccaggcccatca
ggaacctctaaggcctcagcccagatctcaggccagtcagacacagacatcacagccgag
ttcctgcagcccttgctgacacctgacaatgtggccaatctggtcctcatcagcatggtg
tatctgcctgaggccatgcccgcctctttccaagccatctataccccagtggagtcagca
ggcaccgaagcccagatcaagcacctggctcggctcatggccacacagatgacggctgca
ggactagggccaggtgtggagcagaccaaacagtgcaaggaggagcccaaggaggagaag
gcggtgaagccagagagcgtcctgatcaagcggcgcctctcggcccagggccaggccatc
tcggtggtgggctccctgggcgccatgtctgctctagaggaggaggcgccccaggccaag
aggaggccggagcccatcatccctgtcacacagccccggctggctggcgctggtggccgc
aagaaaatcttccgcctgagcgatgtgctgaagcccctgacagatgcccaggtggaggct
atgaagctgggcgctgtgaagcggatcttacgggcagagaaggctgtggcctgcagcggg
gcggcccaggtgcgcataaagatcctggccagtctcgtgacgcagtttgattcaggcctg
aaggctgaggtcctgtccttcattctggaggatgtgcgggcccgcctggacttggccttc
gcctggctctatcaggagtacaacgcctatctggcagccggtgcctcgggcgccctggac
aagtacgaggactgcctcatccgcctgctctccggcctgcaggagaagccagaccaaaag
gatgggatcttcactaaagttgtgctggaggcgccactgatcacggagagcgctctggag
gtgattcgcaagtactgcgaggacgagagtcgtacatacctgggcatgtccactcttcga
gacctgatcttcaaacggccgtcccgccagttccagtacctgcatgttctgctagacctc
agctcccacgagaaggacaaggtgcgctcccaggccctgctgttcatcaagcgcatgtat
gagaaggaacagctgcgagagtatgtggagaaatttgccctcaactacctgcagctcttg
gtccaccccaacccgccgtcagtgttattcggagctgacaaggatacagaggtggcggcg
ccctggaccgaggagaccgtaaagcagtgtctgtacctctacctggctctcctgcctcag
aaccacaagctcatccacgaactggcggccgtgtacacggaggccatcgccgacatcaag
cggactgtgctgagggtcatcgagcagccgatccgaggaatgggcatgaactcaccagag
ctgctcctgctggtagaaaactgtcccaagggggcagagacactggttacacgatgtctg
cacagcctcacggacaaagtcccgccctccccagagctggtgaagcgggttcgggatctc
taccacaagcgattgccagatgtccgcttcctcatccctgtgctcaacggattggagaag
aaagaagtgatccaggccctgccaaagctcatcaaactcaaccccattgtggtgaaagag
gtcttcaaccgcctgctgggcacccagcatggtgaagggaactcggccttgtccccgctg
aaccctggagagctgctgatcgcactgcacaacatcgactcggtgaagtgtgacatgaag
tccattatcaaagccaccaacctgtgctttgcggaacggaacgtgtacacatcggaggtg
ctggccgtggtgatgcagcagctgatggagcagagccccctgcccatgctgctcatgagg
accgtcatccagtctctgaccatgtacccccgcctggggggcttcgtcatgaacatcctg
tcccgcctcatcatgaagcaggtatggaagtatcccaaggtgtgggagggcttcatcaag
tgctgtcaacgcaccaagccccagagtttccaggtcatcctgcagttgccaccccagcag
ctgggtgccgtctttgacaagtgcccagagctccgggaacccctgctggcccacgtccga
tccttcaccccccaccagcaagcacacatccccaactccatcatgaccatcctggaggcc
agtggcaagcaggagccagaggccaaggaagtgcctgcagggcccctggaagaggatgac
ttggagcccttggccctggccccggcccctgccccccggcctcctcaggacctcattggc
ctgcggctggcccaggagaaagccttaaagcgtcagctggaggaggaacagaagctgaag
ccgggaggagtgggagccccctcgtcgtcatcatcgtcgtcgtcgtcgtcctcttcctcc
acccggccaggccctccccagcccgaagaagccatagatttccgggaggaggggcctgag
tgtgagaccccggccatcttcatcagcatggatgacgactcggggttgacggaggctgca
ctcctggactctagtcttgaggggcccctacctaaggaggcagcgggcgggttgacctca
aaggaggagcgcagtccccagaccctcacccctgccggagaagacaccatgaagaccccc
agccctgccgccgaggaatccggggaacccgagatcaaggggaacagctga
DBGET
integrated database retrieval system
