Neogale vison (American mink): 122912019
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Entry
122912019 CDS
T08764
Symbol
SUPT5H
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
nvs
Neogale vison (American mink)
Pathway
nvs03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
122912019 (SUPT5H)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nvs03021
]
122912019 (SUPT5H)
03019 Messenger RNA biogenesis [BR:
nvs03019
]
122912019 (SUPT5H)
Transcription machinery [BR:
nvs03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
122912019 (SUPT5H)
RNA polymerase I system
122912019 (SUPT5H)
Messenger RNA biogenesis [BR:
nvs03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
122912019 (SUPT5H)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW1_SPT5
KOW
KOW4_SPT5
KOW2_Spt5
KOW5_SPT5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
GPKOW_C
DUF3912
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
122912019
NCBI-ProteinID:
XP_044113216
UniProt:
A0A8C7EPD4
LinkDB
All DBs
Position
7:55838234..55866515
Genome browser
AA seq
1087 aa
AA seq
DB search
MSDSEDSNFSEEEDSERSSDGEEAEVEEERRSVAGSEKEEEPEEEEEEEEEEEYDEEEEE
EDDDRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKEEIEASNIDNVVLDEDRS
GARRLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLW
TVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIE
GVGNLRLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQ
NTISLKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLI
FEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNF
QPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKV
IAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELV
QLDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIV
KVIDGPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVG
GFAPMSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKGY
IGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGS
GSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAF
DDEPTPSPQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQG
SYQPSPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSP
GGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSE
KVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRF
LGKLLEA
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagcgaggacagcaacttctccgaggaggaggatagcgagcgcagcagtgac
ggcgaggaggccgaggtagaggaagagcggcggagtgtagcaggcagtgagaaggaggaa
gagcctgaggaagaagaggaggaggaagaggaggaagaatatgatgaggaagaggaagaa
gaagatgacgaccgacctcccaagaaaccccgccatggcggcttcattctggacgaagct
gatgtggacgatgagtatgaggatgaggaccagtgggaggacggagcagaggacattcta
gagaaagaagagattgaagcctccaatatcgataatgttgtcctggatgaagaccgttct
ggggctcgccgcctacaaaacctctggagggatcagcgagaggaagaactgggcgagtat
tacatgaagaaatatgccaagtcatctgtgggagagacggtgtatggaggatccgacgag
ctctcggatgacatcacccagcaacagctgctcccaggagtcaaggatccaaatctgtgg
actgtcaaatgtaagattggggaggaacgggccacagccatttccttgatgcgcaagttc
attgcctaccagttcacagacacgcccctgcagattaagtcagtggtggcgccggagcac
gtgaagggctacatctacgtggaggcctacaagcagacgcacgtgaagcaggccatcgag
ggtgtgggcaacctgcggcttggctactggaaccaacagatggtgcccatcaaggagatg
acagacgtgctcaaagttgtgaaggaggtggccaacctgaagccaaaatcctgggtccgc
ctcaagaggggcatctataaggacgacatcgcccaggtggattatgtggagcccagccaa
aacaccatctctttgaagatgatcccccggattgactacgaccgcatcaaggcccgcatg
agcttgaaagactggtttgccaaaaggaagaagtttaagcggcctccacagaggctgttt
gacgccgagaagatcaggtcccttggcggcgatgttgcctccgatggtgacttcctcatc
ttcgaggggaaccgttacagccggaagggctttctcttcaagagctttgccatgtctgct
gtgatcacggagggtgtgaagcccacgctctctgagctggagaagtttgaggaccagcca
gagggtattgaccttgaggtcgtgactgagagcacagggaaggagagggagcacaacttc
cagcctggggacaacgtggaggtgtgtgagggtgaactcatcaacctgcagggcaagatt
ctcagcgtggacggcaacaagatcaccatcatgcccaagcacgaggacctcaaggacatg
ctggagttcccagcccaggaacttcggaagtactttaaaatgggggaccacgtgaaggtg
attgctggccgatttgagggtgacacaggtctcattgtgcgagtggaagagaacttcgta
atcctcttctctgacctcaccatgcatgagctgaaggtgctcccccgggacctgcagctc
tgctcagagacggcatcgggcgtggatgtggggggccagcatgagtggggggagctggtg
cagctggacccccagaccgtgggtgtcatcgtgcgactggagcgggagaccttccaggtg
ctgaacatgtatgggaaggtggtgactgtcaggcatcaggctgtgacccggaagaaggac
aaccgatttgcggtggccctggactcggaacagaataacatccatgtgaaggacatcgtc
aaggtcattgacggcccccactcaggccgggagggcgaaattcgccatctcttccgcagc
ttcgccttcctgcactgcaagaaactggtggagaacgggggcatgtttgtctgcaagacc
cgccacctcgtcctggcagggggctccaagccccgagatgtgaccaacttcacagtgggc
ggctttgcccccatgagccctcggatcagcagtcccatgcaccccagcgctggaggtcag
cgcggtggctttggcagccccggtggcggcagcggaggcatgagcaggggccgggggcgg
agagacaacgagctcatagggcagaccgtgcgcatctcccaggggccctacaaaggctac
attggtgtggtgaaggatgccactgagtccacagcccgcgtggagctgcactccacctgc
cagaccatctctgtggaccgtcagcggctcaccacagtgggctcgcggcgcccgggaggc
atgacctccacctacgggcggacgcccatgtacggctcccagacgcccatgtacggctct
ggctcccgcacacccatgtatggctctcagacgcctctccaggatggcagccgcaccccg
cattacggttcacagacacccctgcatgatggcagccgtactcctgctcagagtggggcg
tgggaccccaacaatcccaacacaccatcccgggcagaggaagaatatgagtatgccttt
gacgacgagcccaccccatccccacaggcctatgggggcacccccaatccccaaacaccc
ggctatcccgacccctcatccccacaggtcaaccctcagtacaacccacagacgccaggg
acgccagccatgtacaacacagaccagttctccccctatgctgccccctctccgcaaggc
tcctaccagcccagccccagcccccagagctaccaccaggtggcgccaagcccagcaggg
taccagaacacccactctccggccagctaccaccccacaccctcccccatggcctatcag
gccagcccgagcccgagccctgttggctacagtccgatgacacctggagccccttcccct
gggggctacaacccacacacaccaggctcaggcattgagcagaactccagcgactgggta
accacagacatccaggtgaaggtgcgggacacctacctggatacgcaggtggtggggcag
acaggagtcatccgcagcgtcacaggaggcatgtgctctgtgtacctaaaggacagtgag
aaggtggtcagcatctccagcgagcacttggagcccatcacccccaccaagaacaacaag
gtgaaggtgatcctgggtgaggaccgggaagccacaggggtcctgttgagcatcgatggt
gaggacggcatcgtccgcatggaccttgacgagcagctcaagatcctcaatctccgcttc
ctggggaagctcctggaggcctga
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