Neogale vison (American mink): 122913273
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Entry
122913273 CDS
T08764
Symbol
IGHMBP2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
nvs
Neogale vison (American mink)
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
nvs03009
]
122913273 (IGHMBP2)
03012 Translation factors [BR:
nvs03012
]
122913273 (IGHMBP2)
Enzymes [BR:
nvs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122913273 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
122913273 (IGHMBP2)
Ribosome biogenesis [BR:
nvs03009
]
Eukaryotic type
Other ribosome biogenesis factors
122913273 (IGHMBP2)
Translation factors [BR:
nvs03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122913273 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
Viral_helicase1
DEAD
ResIII
nSTAND3
AAA_22
SLFN-g3_helicase
AAA_16
IstB_IS21
Helicase_RecD
UvrD-helicase
Flavi_DEAD
AAA_25
DnaB_C
AAA
PhoH
ABC_tran
Zot
UvrD_C_2
AAA_18
NPHP3_N
DAP3
NTPase_1
Motif
Other DBs
NCBI-GeneID:
122913273
NCBI-ProteinID:
XP_044115960
LinkDB
All DBs
Position
7:complement(206468100..206493661)
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AA seq
1013 aa
AA seq
DB search
MASAAVESFVTKQLDLLELERDAEVEERRSWQENISLKELQSRGVCLLKLQVSSQRTGLY
GRLLVTLEPRRCVAAAVLPSNSFTSGDIVGLYDEGSQLATGILTRITQRSVTVAFDESQD
FQLSLDREQTYRLLKLANDVTYKRLKKALITLKKYHSGPACSLIDVLFGGSAPSAASEIQ
PLPFCNPGLDASQKEAVSFALSQKELAIIHGPPGTGKTTTVVEIILQAVRQGLKVLCCAP
SNVAVDNLVERLARSKQRIVRLGHPARLLDSIQQHSLDAVLARSDSAQIVADIRKDIDQA
FAKNRQTQEKREKSGVWGEIKLLRKELKEREEAAMLESLRSAAVVLATNTGASSDGPLKL
LPDGHFDVVVIDECAQALEASCWIPLLKARKCVLAGDHKQLPPTTVSHKAALAGLSRSLM
ERLADELGAQVVRTLTVQYRMHQAIMRWASDALYSGRLTAHPAVAGHLLRDLPGVAATEE
TSVPLLLVDTAGCGLFELEEDDDQSKGNPGEVRLVSLHIQALVDAGVQASDIAVITPYNL
QVDLLRQSLAHRYPELEIKSVDGFQGREKEAVVLSFVRSNRKGDVGFLAEDRRINVAVTR
ARRHVAVVCDSRTVSSHAFLKTLLGHFTEHGEVRTAFEYLDDIVPENYSHEGSQGPSQAG
AKPHSSAVSARKPRGGRPRDGTRASRAAAGLERKRTGGKPSGPEGPSQPSLNGGSPEGAA
TRDPAEHFRAKIAEFVASEKTELEFPASLNSHDRMWVHQIAEEHGLRHDSSGEGKKRFIT
VSKRAPPAQPAPPPPAGAGNHTPADAPGPTQTGPPAGGQRSQDTLNLKALHLERLQRAKS
KQERPATDRVATDRVATDGAATDGAARDGQQASRSGLRTLPEKKKKKEAKGNTAIDLPGK
EDFEALVAAAIKADNTCGLAKCTASVATLGQLCLHCGRRFCLSHHLPEIHGCGERARAHA
RQRISREGILYAGSGTKDRSLDPAKRAQLQRRLDKKLDELSGQRKSKRREKDK
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggcggctgtggagagcttcgtgaccaagcagttggacctgctggagctcgag
agagacgcggaggtcgaggagcgcaggtcttggcaggaaaacatctccctgaaagaactc
cagagccgaggcgtgtgtttgctgaagctgcaggtgtccagccagcggacggggctctac
gggcggctgctggtcaccttggagcccaggagatgtgtggcggccgcggtgcttcccagc
aacagctttacgtcaggcgatatagtgggtctgtacgacgaagggagtcagctggccacg
gggatcctgacccggatcacgcagagatcggtcacggtggcctttgacgagtcccaggac
ttccagctgagcttggacagggagcagacctacaggctgttaaaactggccaatgatgtc
acttacaagagactgaaaaaggctctgatcacactaaagaagtaccattccggccccgcg
tgctcactcatagacgttctctttggtggctccgcccccagtgctgccagtgagatccag
ccgctgccgttctgcaaccctggcctggatgcctcccagaaggaagccgtctccttcgcg
ctgtcccagaaagagcttgccatcatccacgggcctcctggcaccgggaagaccaccacc
gtggtcgagatcatccttcaggctgtgaggcagggcttaaaggttctgtgctgtgctccc
tccaacgtcgccgtggacaacctggtggagcgtctggcccgcagcaagcagaggatcgtg
cgcctcgggcaccctgcccgcctgctcgactccattcagcagcattccctcgacgcggtg
ttagcgcggagtgacagcgcccagattgtcgcagacatcaggaaggacatcgatcaggcc
ttcgcgaagaacaggcagacccaggagaagagagagaagagcggcgtttggggtgaaatc
aagctgttgaggaaggagctgaaggagagggaggaggccgcgatgctggagagcctcagg
tcggccgcggtggtgctggcgacaaacacaggtgcctcttccgacggccctctgaagctg
ctgcccgacggccacttcgacgtggtggtcatcgacgagtgcgcacaggccctggaagcc
agctgctggatcccgctgctgaaggccaggaagtgcgtcctggccggcgatcacaagcag
ctgccccccaccaccgtctctcacaaggcggcgctggcggggctgtcgcggagcctgatg
gagcggctggcggacgagctcggcgcgcaggtggtgcggacgctcacggtgcagtaccgc
atgcaccaggccatcatgcgctgggcctcagacgccctctacagcgggcggctcaccgcc
caccctgccgtggcggggcacctcctgcgggacctcccaggagtggctgccacggaggag
acgagcgtccccctgctgctcgtggacacggccggctgcgggctctttgagctggaggag
gacgacgaccagtctaaggggaatcctggtgaagtgcgcctcgtcagtctgcacatccag
gccctggtggacgctggtgtccaagcgagtgacatcgccgtcatcacgccgtacaacctc
caggtggacctgctcaggcagagccttgcccataggtaccccgagcttgaaattaagtct
gtcgatggtttccaaggccgagagaaggaggctgtggtcctgtccttcgtcagatccaat
aggaaaggcgacgtgggcttcctcgctgaggaccggcggatcaacgttgcggtcacccgc
gctcggcgccacgtggcggtcgtgtgcgattctcgcactgtcagcagccacgccttcctg
aagaccctgctggggcacttcacggagcacggggaagtgcgcacggcctttgagtatctt
gacgacatcgtccctgaaaactactcccacgagggttcccagggccccagccaagctggg
gcaaagccccacagctccgcggtgtcagccaggaagcctcgtggaggccggccgcgggac
gggacccgggcgtccagagcagccgccgggctggagcggaagaggacgggtgggaaaccc
tcgggccctgagggcccttctcagcccagcctcaatggaggcagcccagagggagcggcg
accagagaccccgcggagcacttccgggccaagatcgccgagtttgtggcgagcgagaaa
actgagctggagtttcctgcttccctgaactcccacgacaggatgtgggtccaccagata
gctgaggagcacgggctgaggcacgacagctccggggaagggaagaagaggttcatcacc
gtgagcaagagagccccgccagcccagccagccccgccgcctccagccggggccggcaac
cacacccctgcggatgcgcccggccccacccagaccgggccccctgctggggggcagcgc
agccaggacaccctgaatctgaaggccctgcacctggaaaggctgcagagagccaagagc
aagcaggagcggcccgccacggacagggtcgccacggacagggtcgccacggacggggcc
gccacggacggggccgccagggacgggcagcaggcctcgcgctctgggctgcgcacgtta
ccagagaagaagaagaagaaagaagcaaaaggaaacacggccatagatttgcccggcaag
gaggacttcgaggccctggtcgcggccgccatcaaggctgataacacctgtggccttgct
aagtgcacagccagcgtggcaaccctgggccagctctgtctgcactgcggccgccggttc
tgcctcagccaccacctgcccgagatccatggctgtggcgagagggctcgtgcccacgcc
cggcagaggatcagccgggagggaatcctctacgccggcagtggaaccaaggacaggtcc
ctggaccccgccaagagggcccagctgcagaggaggctggacaagaagctggatgaactg
agcggccagaggaagagtaagcggcgggagaaggacaagtga
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