Neogale vison (American mink): 122915060
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Entry
122915060 CDS
T08764
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
nvs
Neogale vison (American mink)
Pathway
nvs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122915060 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nvs03021
]
122915060 (POLR1A)
Enzymes [BR:
nvs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122915060 (POLR1A)
Transcription machinery [BR:
nvs03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
122915060 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_1
Motif
Other DBs
NCBI-GeneID:
122915060
NCBI-ProteinID:
XP_044117491
LinkDB
All DBs
Position
8:complement(104682274..104752678)
Genome browser
AA seq
1718 aa
AA seq
DB search
MLGSKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSVNGLYDLALGPADS
KEVCSTCVQDFNNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLL
VCQLRVLEVGALQAVYELERILNRFLEENADPTAFEIQEELEQYTAKIVQNNMLGSHGAH
VKNVCESRSKLIAYFWKAHMTAKRCPHCKTGRSVVRKEHNSKLTVTYPAMVHKKAGQKDT
ESLGIEEAQMGKRGYLTPTSAQEHLTALWKNEGFFLNYLFSGLEDVDVESRFNPSMFFLD
FLVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMKDMVLIRKLLALMAQEQELPCEVAAPAK
DEEKDSFVVLDRSFLSLLPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMMEKYPGIRQI
LEKKDGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL
RQAVINGPSVHPGASMVINEDGSRTALSAVDLTQREAVAKQLLTPATGAPKPQGTKIVCR
HVKNGDILLLNRQPTLHRPSIQAHLARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQ
SELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELLYRG
LTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDHVPLSLSGKAKISGKAWVQES
PRPVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTC
LARLFTAYLQLYRGFTLGVEDILVKPKADAKRHRVIEESTHCGPRAVRAALNLPAAASCD
EVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQS
GAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIK
PPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYG
EDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLQEVLSRADPQKALRHFRAIKKWQSKHP
NSLLRKGAFLSYSQKIQAAVKALNLEGGNQNGRSLGTHQILKMWSELDEQSRRKYQKKAA
PCPDPSLAVWRPDIYFASVSETFEKKMDDYSIEWASQAEKSYEKSELSLDRLRTLLQLKW
QRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIK
TPMMSVPVFNTKKALKRVKSLKKQLTRVCLGEVLEKIDVQESFCVGDKHDKFQVYRLRFQ
FLPHAHYQQEKCLRPEDILHFMETRFFKILMESLRKKNNKASAFRTVNTRRATQRDLDNS
GESERSRGEQEGDEEEEGPIVDAEADEGDADASDAKRKEKQEEEVDYESEEEEVEEDNDD
EDVREEGHDSANGAHEAQEQDEEVGSGPEEDSPASAPLSRPQKSAHRREPQGAEAVERRV
RAVREAHSFIEDYEYDTEESLWCQVTVKLPLMKINFDMSSLVMSLAQSAVVYATKGITRC
LLNETTNKKNEKELVLNTEGINLPELFKYSEVLDLRRLYSNDIHAMASTYGIEAALRVIE
KEIRDVFAVYGIAIDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQQMTFETSFQFLK
QATLMGSHDELRSPSACLVVGKVVRGGTGLFELKQPLR
NT seq
5157 nt
NT seq
+upstream
nt +downstream
nt
atgttgggctcaaagaacatgccctggcggaggctgcagggcatttccttcgggatgtat
tcggcggaagaactcaagaaattgagtgttaagtccattacgaaccctcgttacctggac
agcctggggaacccatcggtgaatggcctgtacgatttagctttgggccctgcagattcc
aaagaggtgtgctccacctgcgtgcaggacttcaacaactgctctggccacctgggccac
attgaccttccactcacggtgtacaaccctctcctcttcgataaactctacctgctgctc
cgaggctcctgtttaaactgtcacatgctgacctgcccccgtgctgtgattcacctctta
gtgtgccagctgcgagttctggaagtgggtgctctacaggcagtctatgagcttgagaga
attctgaacaggtttctagaagaaaatgctgatcctactgccttcgaaattcaggaagag
ttggaacagtacacggccaaaatcgtacagaacaatatgttgggatcccatggtgctcat
gtaaaaaatgtttgtgagagcaggagcaaactcattgcttacttctggaaggcacatatg
actgctaagcggtgtccccactgcaagaccgggcggtcagttgtccgaaaggagcacaac
agcaagctgacagtcacatacccagccatggtgcacaagaaggctggccagaaggacaca
gagtccctgggaattgaggaagctcagatgggaaaacgagggtacctgacacccaccagc
gcccaagaacatcttaccgccctttggaagaatgaaggattctttctgaattaccttttt
tcgggactggaagatgtcgatgtggagtctagattcaatcccagtatgttctttttggat
ttcctggtggtaccaccctcaaggtaccgccctgtcaatcggctgggggaccagatgttt
accaacggccagacggtgaacttgcaggctgtcatgaaggatatggttctgatccgaaaa
cttctggcactgatggcccaagaacaggagctgccatgtgaggtggcagcacctgccaag
gatgaggaaaaagattcttttgttgttctggaccgatcctttttgagtttgcttccaggc
cagtccctcacagacaaactttacaacatttggattcgtcttcagagccatgtcaatatt
gtgtttgatagtgagatggacaaattaatgatggaaaagtatcctggcatcagacagatc
ctggagaagaaggatggcttattccgaaagcacatgatgggaaagcgagtagactatgcg
gcccgctcagtcatctgcccagacatgtacattaacaccaacgaaattggaattcccatg
gtgtttgccacaaaactgacctaccctcagccagtcaccccctggaatgttcaggaactg
aggcaagccgtcatcaatggccccagtgtgcacccaggagcctccatggtcatcaatgag
gatggcagccgcacagccctgagtgccgttgacctgacccagcgggaagccgtggccaaa
cagctcctgacaccagccacgggggcacctaagccccaggggacaaaaattgtgtgccgg
catgtgaagaatggggacatcctcctgctgaatcgacagcccaccctgcacagaccctct
atccaggcacaccttgcccgcatcctgccggaagagaaagtcctgcggctccactatgcc
aactgcaaggcgtataatgctgacttcgatggagacgagatgaatgcccacttcccccag
agtgaactgggccgggctgaggcctatgtcctggcctgcacagatcagcagtacctagtc
cccaaggatggccaaccattggcagggttgatccaagatcacatggtttcgggcgcaaac
atgaccattcgaggttgctttttcactcgggagcagtacatggagctgctgtaccgagga
ctcacagacaaggtggggcgtgtgaagctctttcctcctgccatcctgaagccctttcca
ctgtggacaggaaagcaggttgtgtcaacgctgctcataaacataatcccagaagaccac
gtcccactgagcttatcgggaaaggcgaagatcagtggcaaagcctgggtacaggagtcc
cctcggcctgttcctggctttaaccctgactccatgtgcgagtcccaggtgatcatcaga
gaaggggagctgctgtgtggggtgctggacaaggcgcactacgggagctccgcctatggc
ctggtccactgctgctatgagatctatggtggggagaccagcggcaaggttctcacctgc
ctggcccgcctcttcactgcctacctgcagctctacagaggtttcaccttgggcgtggaa
gacattctggtgaagccaaaggcagatgcaaagagacacagggtcattgaagagtccact
cactgcgggccacgggctgtcagggctgcgttaaacctgccagcagctgcgtcatgtgat
gaggtccgagggaaatggcaggatgcccatctgggcaaagaccagagggattttaacatg
attgatctgaagttcaaggaggaagtgaaccattacagcaatgagattaacaaggcgtgc
atgccatttggcctgcacagacagttcccagagaacaacttgcagatgatggtgcagtct
ggagccaaagggtcgactgtgaacaccatgcagatctcatgcctgctgggccaaatcgaa
ttggaaggtcggagaccccccttaatggcatctggcaagtcactgccctgctttgagcct
tatgagttcacgcccagggccggtggtttcgtcactggcagattcctcactggcatcaag
cctccggagttcttcttccactgcatggccgggcgagaggggctagtggacaccgctgtg
aaaaccagccgctccggctacctccaaaggtgcatcatcaagcacttggaggggctggtg
gtccagtatgatctgaccgtgcgtgacagtgatggcagcgtggtccagttcctgtacggg
gaggacggcctggatatccccaagacgcagttcctgcagcccaagcagttccccttcctc
gccagcaactatgaggtgataatgaaatcgaagcatctccaggaggttttatccagagca
gatccccagaaagctctccgtcacttcagagccatcaaaaaatggcaaagcaaacatccc
aacagcctgctgagaaaaggcgccttcttgagttattcacagaaaattcaagcagctgtg
aaagccttgaaccttgagggtgggaaccagaatggccgcagccttgggactcaccagatc
ttgaagatgtggagtgagttagatgagcagagtcggagaaaataccagaagaaggcagct
ccttgtcctgaccccagtctggctgtctggcgcccagacatctactttgcatcagtgtca
gaaacatttgaaaagaagatggatgactacagcattgagtgggcatctcaagcagagaag
agttatgagaaatcagagctttctcttgacaggttgaggaccctgctgcagctgaagtgg
cagcgctcgctgtgtgacccgggtgaggccgtgggcctgctggccgcccagagcattggg
gagccctccacgcagatgaccctgaacactttccactttgcgggcagaggcgagatgaac
gtcaccctgggcattccgaggttgagggagatcctcatggtggcgagtgccaacatcaag
acgcccatgatgagcgtgcccgtgttcaacaccaagaaagccctgaagagagtgaaaagc
ctgaagaagcagctcaccagagtgtgcttaggcgaggtgttggagaaaattgatgtccag
gagtcgttctgtgtcggagacaaacacgacaagtttcaggtgtaccggctgcggtttcag
ttcctgccgcatgcgcactaccagcaggagaagtgcctgagacccgaggacatcctgcac
ttcatggaaacaaggttctttaaaattctgatggaatccctcagaaagaagaataataaa
gcctccgctttcagaaccgttaacactcggagagccacccagcgggatctcgacaactct
ggggagtcagagaggagtcggggagaacaggaaggcgatgaggaagaggagggccccatt
gtggatgctgaagctgacgagggagacgccgatgcttctgatgccaaacgcaaggagaag
caagaagaggaggtcgattatgagagcgaggaagaggaggtcgaggaggataatgatgat
gaggacgtgcgggaggaagggcacgactctgcgaacggtgctcacgaggcccaggagcag
gatgaagaggtgggctcaggccccgaggaggactcgcctgcctccgcccccctcagccgg
ccccagaaatccgcccaccgcagggagccccagggagccgaggctgtggagcgccgggtg
cgggccgtgcgtgaggcccactcgttcatagaggactacgagtacgacaccgaggagagc
ctgtggtgccaggtgacagtgaagctccctctgatgaagattaactttgacatgagctcc
ctggtcatgtccctggcccagagtgccgtcgtctacgcgaccaagggcatcacaaggtgt
ctcctgaatgaaaccaccaacaagaagaacgagaaggagcttgtgttaaacacagaagga
atcaatctgccggagctgttcaagtactcggaggttctggacttgcgccgcctctattcc
aatgacatccacgcgatggccagcacctatggcatcgaggctgcactgcgggtgatcgag
aaggagatcagggacgtgtttgctgtgtatggcattgccattgatccccgccatctttcc
ctggtcgccgactatatgtgcttcgagggcgtttacaagccattgaatcgctttgggatc
cgttcaaactcctcccctctgcagcagatgacgtttgaaaccagcttccagttcctgaag
caggccaccttgatgggatcgcacgatgagctgaggtccccttctgcctgcctcgtggtc
gggaaagtcgtcaggggcgggacaggcctgtttgagctcaagcagcccctgagatag
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integrated database retrieval system
