Neogale vison (American mink): 122916868
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Entry
122916868 CDS
T08764
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
nvs
Neogale vison (American mink)
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
nvs03036
]
122916868 (SHOC1)
Chromosome and associated proteins [BR:
nvs03036
]
Eukaryotic type
Meiosis-specific proteins
Others
122916868 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
122916868
NCBI-ProteinID:
XP_044120193
LinkDB
All DBs
Position
9:21365598..21443498
Genome browser
AA seq
1510 aa
AA seq
DB search
MFSTFKYCAIDYLYENIVRKKFCRDALLLRVPSCLYQDGNYYAGVIDNKFRRPWMRVSAV
SVWGMTDDISVLDQWKASLFVEDFLEKKTITGMVIQIDCMFEEVVPSSNPNSQTDVEEAS
LYTRKDYTEVFTPVSGLGKCPALQTQNEDLSIDEEIIFLNNLMTYKSQLPTLHTLLSRLK
LFLVKDPILDFKGQIFTEANFFRECFSFQEDLKGLVKEDFYMDKENFCQEKLEDTVGLHK
TPSSLPECEFLIPTSLKQDVDILSLSELKESLNLVPEIINYADENEKLFKIDLTTKHGID
IEDIKCSSTEILAIQKHCEPEYSEPVELEMPLTHLHLTNQHSSMTSLCTGLQTFPFSPIC
KISLLTAEESANKNHMMWQLESCRSSLKPFLLTVPRTEEPNSQYSVMDLKKIFSIEEESL
VVNLVSTELGEKGQLNLKEAEVLEHPNMYLCHDNLSSDDTKMEIFLPTKEPQLESWLEQK
SCSSPIVLINETSTNDHLLLPQKISSLAEVSDLCFSDDNLSVKQPTKEEKPKNDLELVDR
ISQNKENEDYLELDCTVPSVEPSSSPKIDKASFKHGKKWENDLDLLSDFITLRNKYKTCM
SKTEVTGSKENSDKEHCLTLQEESPPVCTNKALEKINQERIVDNVIEIQASDSQCQAFCL
LEAAATPILKKLVCLCTLPAANWTFATVIFDQTRFLLKEQEKVISDAIQQGTNDEKEVTF
KHAALLHLLVTIRDVLLTCSLDTALGYLSNAKDIYKNILGSYLDDICRQLEIVQFIREKK
PETNYKIQELQCQILNWMQSGQQIKVLIIIRMDSDGEKHLLIKILNKMEGLTLTVLHSNN
KRKDFLESEGVLNGKSSCVVVHNQYIGSDFPWSNFSFVVEYNFVENSCWTKHCKKLNIPH
KVFKVILPDTVLQRSTLLDSFGGFLLEIQIPYVFFASEGLLNTQEILQLLESKYNITLVE
RCCSESLKLFGGTECYVVVTVDEHTAIILQDLEELNCEKASDNIIMRLMALSFQYSYCWI
ILYNKKTLNAEYHLTEKTLHHLALIYAALVSFGLKSEELDVKLIIAPGVEEAALIIRQIA
DHNLMTSKRDPREWLDKSWLEVSPSKEEMYLLDFPCINPLVAQLMLNKGPSLHWILLATL
CQLQELLPEVPEKVLKHFCSITSLFKISSSSITNSSQSPSPQENGNQTSTFTSQSSASGS
SNSVLQGHNENYHFSDIGEAMHGDTNSSSNCNSSLMELREMPCVLPPVTSYNQASYWKDS
NCNPNIVHNPFLINTESRNVAGDSFQNQNDSESDVFCLDLTQINYENIVSPIDTQKRVAP
NFINYQKKGTHDAKGHINKEVSAPSFSLEASQSPLHWNFKKDVWEKQNHSFNLKYGAKQT
ACDKWYSQENNLFTNQQKCLSDELEDFICERSNAGTKRTSWKELPSAPSLDLFCASDSNV
NQKEFNSLYFHQRAGKCLGQKRHSDSSSNSGDKKSLPDFMCSQLPQFKKRRLVYEKVPGR
ADGQTRLRFF
NT seq
4533 nt
NT seq
+upstream
nt +downstream
nt
atgttttcaacattcaaatattgtgcaatagactatttatatgagaatatagttagaaag
aagttttgcagagatgctttattgcttcgagtcccttcatgtttatatcaagatggaaat
tattatgcaggagttattgataataagtttaggaggccatggatgagagtttcagctgtt
tcggtgtggggaatgacagatgatatttcagtcttggatcaatggaaagcaagtctcttt
gtggaggattttctagagaaaaaaacaattacaggaatggtgattcagattgactgtatg
tttgaggaagttgttccaagttcaaacccaaactcccaaactgatgtagaggaagccagt
ttatatacccgtaaggactacaccgaagtctttacacctgtcagcggtttaggaaaatgt
ccagcacttcaaacacagaatgaagatttgtctattgatgaagaaataatttttttaaat
aacttgatgacctataaaagtcagctaccaactttgcatactttgttgagtaggctaaaa
ctatttttagtaaaggaccccattttagatttcaaaggacagatcttcacagaagctaat
ttcttcagggaatgtttctcttttcaagaagatttgaagggtctagtgaaagaagatttt
tacatggataaagagaacttttgtcaggaaaagctagaagatacagtaggtttacataaa
actccatcaagtttgcctgagtgtgaattcttaatacctacaagcctcaaacaagatgtt
gatattctgtcactctccgaactaaaggaatccttaaacttagtgccagaaataataaat
tatgcagatgaaaatgaaaagcttttcaaaatagatcttactactaagcatggaattgac
attgaggatataaaatgcagctccacagagattttggccattcaaaaacattgtgaacca
gagtacagtgaaccagttgagttagaaatgccattaactcatctacatctaacaaaccaa
cattcttccatgacttcattatgtacaggacttcagacatttccattttctcctatttgt
aaaattagtttgcttactgctgaagaatcagctaacaaaaaccacatgatgtggcagtta
gaaagctgcagaagctcactgaagccatttctgcttacagtgccaagaactgaagagccc
aacagtcaatattcagttatggatttgaaaaagatattttctattgaggaagaaagcctg
gtagttaatcttgtgagcacagagttgggggaaaagggacaactgaatctgaaagaggca
gaagttttggaacatccaaatatgtatttgtgtcatgataacctatcatctgatgatact
aaaatggagatatttttgccaacaaaagagcctcagttagaatcatggctagagcaaaaa
agttgttcttcacctattgtacttattaatgagacatctacaaatgatcatttattactt
ccacaaaagatttcatctctggcagaagtatcagacctgtgtttttctgatgacaattta
tctgttaaacaaccaacaaaagaagaaaaaccaaagaatgatctagaactagttgataga
ataagccaaaataaagaaaatgaagattacttagaacttgactgcacagtaccatctgtt
gaaccatcttcctctccaaaaattgataaagcatcttttaaacatggtaaaaaatgggag
aatgatttggaccttttgagtgactttattacactgcgaaataaatacaagacttgtatg
tcaaagactgaagtcacaggcagtaaagaaaattctgataaagaacattgtttgactctt
caggaagaaagtcctcctgtttgtactaataaagctctagagaaaataaatcaggaaagg
atagtggataatgtcattgaaattcaagcatcagatagccagtgccaagcattctgtctt
ctagaagcagcagctactcctattttaaaaaaacttgtatgcctctgtactctccctgcc
gctaattggacatttgccactgtcatttttgaccaaacaagattcctcctaaaggaacaa
gaaaaagtaataagtgatgctattcagcaaggtacaaatgatgaaaaagaagtgacgttc
aagcatgccgctctcttacatcttctggtaacaattagagatgtccttttaacatgtagc
ttggacacagcattgggatatttgtcaaatgcaaaagatatctacaaaaacattttaggc
tcctatttagatgacatttgcagacagctggagattgtacagtttattagggaaaaaaag
cctgaaaccaactacaagatacaagaactacagtgtcagatactaaattggatgcaaagt
ggacaacagattaaggtgctgattataataagaatggactcagatggtgaaaaacattta
ctcattaaaatccttaacaaaatggaaggtttaacattgactgtcttacattcaaacaac
aaaaggaaagattttctggaatctgaaggtgttttaaatggtaaaagttcctgtgtagtt
gtgcataatcaatatattggatcagatttcccttggagtaacttctcatttgtggtggaa
tataattttgtagaaaactcctgttggactaaacactgcaagaaattgaatattcctcac
aaggtcttcaaagtgattcttccagacacagttttacagagaagcaccttgctggatagt
tttggtggatttcttctggaaattcagattccttatgtgttttttgcatctgaaggactt
cttaatactcaagaaatacttcagttgctagaatccaagtataatatcacactagtggag
agatgctgcagtgagtcattgaaactctttggaggtacagagtgttatgtagtggtgaca
gttgatgaacacactgccataattttgcaggacctagaagaattgaactgtgagaaggca
tcagataatatcattatgagattgatggcattatcattccagtacagctattgttggata
atcttgtataacaaaaaaacattaaacgcagagtaccatcttacagaaaaaacacttcat
catctagcactgatttatgcagctttggtatcatttgggctaaaatcagaagaactggat
gtaaagcttataattgcgccaggagtggaagaggctgcactgataattcggcaaattgct
gatcacaatttaatgacctcaaagagagatcctcgtgaatggttggataaatcctggctt
gaagtttcaccatctaaggaagaaatgtacttacttgattttccatgtattaacccattg
gtggctcagctcatgttaaataaaggaccttcactgcactggatattattagcaactctg
tgtcaacttcaggagcttttacctgaagttccagaaaaagtattaaagcatttttgtagc
atcacttccttattcaagattagttcttcttccataacaaactcatctcaaagtccatca
cctcaggaaaatggaaatcagactagtaccttcacctcccagagttcagcttctggctct
tcaaactctgtccttcaaggacataatgaaaattaccacttttcagatataggagaggca
atgcacggagacacaaacagctcttcaaactgtaactcttcccttatggaactaagagaa
atgccatgcgttttaccacctgtgacttcttacaatcaggccagctactggaaagactcc
aattgcaaccctaacatagtgcataatcctttcctgattaatacagaatcaaggaatgta
gctggtgactcctttcaaaaccaaaatgattcagagtcagatgtcttttgtttggatcta
acacaaataaactatgaaaacatagtatcaccaattgacactcagaagagagttgcccct
aattttataaattaccagaaaaagggaacacatgatgcaaaaggacatataaataaagaa
gtgtctgcccctagcttttcactagaagcctcccaatctcctcttcactggaactttaag
aaagatgtatgggaaaaacagaatcactcattcaacttaaaatatggtgcaaagcaaact
gcatgtgacaaatggtactctcaggaaaataatttattcactaatcagcaaaaatgttta
tctgatgagttagaagacttcatatgtgaaaggtcaaatgctgggactaaaaggacttcc
tggaaagaattaccatctgcccccagtttggatttattttgtgcttctgattctaatgta
aatcaaaaagaattcaacagtctttatttccaccaaagagctgggaaatgtttaggacag
aagaggcactctgactcctcatctaactcaggagacaagaaatcattaccagatttcatg
tgctcacaactaccacaattcaaaaaacggcgtctagtgtatgaaaaagtccctggtaga
gctgatggacaaactcgtctgaggtttttttga
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