Neogale vison (American mink): 122917280
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Entry
122917280 CDS
T08764
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
nvs
Neogale vison (American mink)
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nvs03021
]
122917280 (CHD1)
03036 Chromosome and associated proteins [BR:
nvs03036
]
122917280 (CHD1)
Transcription machinery [BR:
nvs03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
122917280 (CHD1)
Chromosome and associated proteins [BR:
nvs03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
122917280 (CHD1)
SLIK complex
122917280 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
DEAD
Motif
Other DBs
NCBI-GeneID:
122917280
NCBI-ProteinID:
XP_044120904
LinkDB
All DBs
Position
1:194817922..194891311
Genome browser
AA seq
1800 aa
AA seq
DB search
MNGHSDEESVRNSSGESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSESGSESGS
QSESESDTSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQQQQQQHQASSN
SGTEEDSSSSEDSDDSSNEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEERDKSSCDETE
SDYEPKNKVKSRKPQNRSKAKNGKKILGQKKRQIDSSEEEDDEEDYDNDKRSSRRQATVN
VSYKEDEEMKTDSDDLLEVCGEDVPQPEEEEFETIERFMDCRIGRKGATGATTTIYAVEA
DGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQET
KRWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYS
ECSWEDGALISKKFQACIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHESL
ELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPL
STLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKD
KAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHF
IMPEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMS
ALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEA
LQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIK
GELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAH
RIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTP
FNKEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQF
KVANFSNMDEDDIELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYMLPRMRNCAKQ
ISFNGSEGRRSRSRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYK
KFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDNSSGTERTGGRLGKVKG
PTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDS
NLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLSRDLAK
KEAQRLSGAGGSKRRKARAKKNKAMKSIKVKEEIKSDSSPLPSEKSDEDDEKDEITSVKH
PNKKIKTERDSEERPEPDVFIKKESEEKREAKEKENKRELKRELKEKEDKKDIKEKDFKE
KRENKVKEAIQKEKDIKEEKLSESKSDSKERSKKSSVSDAPVHITAGGEPVPISEESEEL
DQKTFSICKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYANPE
QIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQNNDQNSNLNAQVIRNPDVER
LKENTNHDDSSRDSYSSDRHLSQYHDHHKDRHQGDSYKKSDSRKRPYSSFSNGKDHRDWD
HYKQESRYYSDREKHRKLDDHRSRDHRSNLEGSLKDRSHSDHRSHSDHRLHSDHRASSEY
THHKSSRDYRYHSDWQMDHRASSSGPRSPLDQRSYGSRSPFEHSVEHKSTPEHTWSSRKT
NT seq
5403 nt
NT seq
+upstream
nt +downstream
nt
atgaatggacacagtgatgaagaaagtgttagaaacagtagtggagaatcaagccagtcg
gatgatgattctgggtcagcttcgggctcaggatctggttcaagttctggaagcagtagt
gatggaagcagtagccagtcaggtagcagtgactctgaatccggatctgaatcgggcagt
cagtcagagtctgaatcagacacttcccgagaaaacaaagtccaagcaaaaccaccgaaa
gttgatggagctgagttttggaaatctagccctagtatactggccgtgcagagatctgca
atgctcaagaagcagcagcagcagcagcagcagcagcagcagcatcaggcttcatctaat
agtggaacagaggaggattcctccagcagtgaagattctgatgactcatcgaatgaggtc
aaaaggaaaaaacataaagatgaagactggcaaatgtctgggtcaggatctccatctcag
tctggttcagattcagaatctgaagaagaaagagataaaagcagttgtgatgaaacagaa
tctgattatgagccaaaaaacaaagttaaaagcagaaaacctcaaaatagatctaaggca
aaaaatgggaagaaaattcttggacaaaaaaagagacagattgattcatctgaggaggaa
gatgatgaagaagattatgataatgataaaagaagttctcgtcgccaggcaactgtcaat
gttagctataaagaagatgaagaaatgaaaacagattctgatgatctactggaggtctgt
ggagaggatgttcctcaacctgaggaagaagaatttgaaacaatagaacgttttatggat
tgtcggattgggagaaaaggagctactggtgctactacaaccatctatgcagttgaagca
gatggtgacccaaatgcaggatttgaaaaaaacaaggaaccaggcgagatccaatatttg
attaaatggaaaggatggtcccatattcacaatacttgggagacagaagaaacccttaag
cagcagaatgttagaggaatgaaaaaattggataactataagaaaaaagatcaggaaaca
aaaagatggttgaaaaatgcttctccagaagatgtggaatattataattgccagcaagaa
cttacagatgatctacacaaacagtatcaaattgtggaacgaataattgctcattccaat
cagaagtcagcagctggttatcccgattattactgtaaatggcagggccttccatactca
gagtgcagctgggaggatggagctctaatttccaaaaagtttcaagcatgcatagatgag
tattttagcaggaatcaatcaaaaaccactccttttaaagattgcaaagtattaaaacaa
agaccaagatttgtagccctaaaaaagcaaccatcctatattggaggacatgagagttta
gaattaagagattatcaactgaatggtttaaattggcttgctcattcttggtgcaaagga
aatagttgcatccttgctgatgaaatgggccttggaaaaacaatacagacgatctcattt
ctgaactatttgtttcatgaacatcaattatatggaccttttctgttagtggtaccactt
tccactcttacttcttggcaaagggaaattcagacatgggcttctcaaatgaatgctgtg
gtttatttaggtgacattaacagtagaaatatgataagaactcatgaatggatgcatccc
cagaccaaacggttaaaatttaatatacttttaacaacttatgaaattttattgaaggat
aaggcattccttggaggtctaaattgggcgtttataggtgtagatgaagcacatcgatta
aagaatgatgactctcttctgtataaaactttaatagactttaagtccaatcatcgtctc
cttattactggaactcctctacaaaactccctcaaagagctctggtctttgctacatttc
attatgccagaaaagttttcttcctgggaagattttgaagaagaacatggaaaaggcaga
gaatatggttatgcaagcctccacaaggagcttgagccatttctgttacgcagagttaaa
aaagatgtggaaaaatctcttcctgccaaggttgagcagattttaagaatggaaatgagt
gctttacagaaacagtattacaagtggatattaactaggaattacaaagccctaagcaaa
ggttccaagggcagtacctcaggctttttgaacattatgatggagctaaagaaatgttgt
aaccattgctacctcattaaaccaccagataataatgaattctataataaacaggaggcc
ttacaacacttaatccgtagtagcggaaaattgattcttcttgacaaactgttaattcgt
ctaagagaacgaggcaatagagttcttattttttctcaaatggtgcggatgttagatatt
cttgcagaatatttgaaatatcgtcaattcccctttcaaagattagatggatcaataaaa
ggggagctgagaaaacaagctctagatcattttaatgctgaaggatcagaggatttctgc
tttttactttccacaagagctggaggcttgggaattaatttagcctccgctgacactgtt
gttatatttgattctgattggaatccacaaaatgatcttcaggcacaggctagagctcat
cgaattgggcagaagaaacaggtgaatatttatcgtctagttacgaaaggatcagttgaa
gaggatatacttgaaagggccaaaaagaagatggttttagatcaccttgtaattcagaga
atggacacaactgggaagacagtactacatacaggttctgccccctcaagttctactcct
ttcaataaagaagagttatcagccattttaaagtttggcgctgaggaactttttaaggaa
cctgaaggagaagagcaagagccccaggaaatggatatagatgaaatcttgaagagggct
gaaactcatgaaaacgaaccaggccctttaactgtaggagatgagttgctttcccagttc
aaggttgccaacttttcaaatatggatgaggatgacattgagttggaaccagaaagaaat
tcaaagaattgggaagaaataattccagaagatcaaagaagacgattagaagaggaagaa
agacaaaaggaacttgaagaaatttatatgcttccaagaatgagaaactgtgcaaaacag
attagttttaatggaagtgaagggaggcgcagtagaagtaggagatattctggatctgat
agtgactcgatctcagaaaggaaaaggccaaagaaacgtggaagaccacggactattcct
cgagagaatatcaaaggatttagtgatgcagaaattaggcggtttatcaagagttacaag
aaatttggtggccctctggaaagattagatgcaattgctcgggatgctgaattagttgat
aagtcagagacagacctccgacgattaggagaattggtgcataatggttgcattaaagct
ttaaaggataattcttcgggaacagaacgaacaggtggtagacttggaaaagtgaagggt
ccaacattccgaatatcaggtgtacaggtgaatgccaagctcgtcatctcccacgaagaa
gaattaataccattgcacaaatccattccttcagatccagaagaaagaaagcagtatacg
atcccatgccacacaaaggcagctcattttgatatagactggggcaaagaagatgattcc
aatttgttaattggtatctatgaatatggatatggaagctgggaaatgattaaaatggat
cctgacctcagtttaacacacaagatccttccagatgatcctgataaaaaaccacaagca
aagcaattgcagacacgtgcggactacctcatcaaattacttagtagagatctggccaaa
aaagaagctcagaggctttctggtgcaggagggtcaaagaggagaaaagcaagagctaag
aagaataaagcaatgaagtctataaaagtgaaagaagaaataaagagtgattcttcaccc
ctgccttcagagaagtccgatgaagatgatgaaaaggatgagatcacttctgtgaaacat
ccaaataaaaaaattaaaacagaaagagacagtgaagaaagacctgagccagatgttttt
ataaagaaggaatcagaagaaaagagggaagcaaaagaaaaagagaataaaagagaactt
aaaagggagctaaaagaaaaagaggataagaaagatataaaggaaaaagattttaaagag
aaaagagaaaacaaagtaaaagaagctatacagaaagaaaaagacataaaggaagaaaag
ttgagcgaatccaagtctgatagcaaggaaagatccaagaaatcttcagtgtcagatgct
ccagttcatatcactgcaggtggtgaaccagttcccatatctgaagaatctgaagagcta
gatcagaagacattcagcatttgtaaagaaaggatgaggcctgtcaaagcagctttgaaa
caacttgataggcctgaaaaaggcctttcagaaagagaacaattggagcatactagacag
tgtttaataaaaattggagaccatatcacagaatgtttgaaagagtatgcaaatcctgaa
caaatcaagcagtggagaaaaaacctgtggatttttgtatctaagtttacggagtttgac
gcaagaaaattacataaattatacaaacatgctattaaaaaacggcaggaatctcagcaa
aataatgaccagaacagcaacttgaatgctcaagtgattagaaatccagatgtggaaaga
ttaaaagagaatacaaatcatgatgatagcagcagggacagttattcatctgatagacac
ttatctcagtatcatgatcatcataaagaccgacatcagggagattcttataaaaagagt
gactctaggaaaagaccctattcttcttttagtaatggtaaagatcatcgtgactgggat
cattacaagcaagaaagcaggtattacagtgatagagagaaacacagaaaactggatgat
cacaggagtagagatcacaggtcaaatttggaaggaagtttaaaggatagatctcattct
gatcatcgttctcattcagatcatcggttacattcagaccatcgggcaagttctgaatat
acacaccataaatcttccagggattataggtatcattcagattggcaaatggaccacaga
gcttccagtagtggccccagatcacctttagatcagagatcttatggctccagatctcca
tttgaacactcagttgaacataaaagtacacctgagcatacctggagtagtcggaaaaca
taa
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