Neogale vison (American mink): 122918657
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Entry
122918657 CDS
T08764
Symbol
COP1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
nvs
Neogale vison (American mink)
Pathway
nvs04115
p53 signaling pathway
nvs04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122918657 (COP1)
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
122918657 (COP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nvs04121
]
122918657 (COP1)
Enzymes [BR:
nvs01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122918657 (COP1)
Ubiquitin system [BR:
nvs04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122918657 (COP1)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
122918657 (COP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_EIPR1
zf-C3HC4_2
WDR55
Beta-prop_RIG_2nd
EIF3I
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
zf-C3HC4
zf-RING_2
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
zf-RING_UBOX
Beta-prop_EML
zf-C3HC4_3
Beta-prop_DCAF4
zf-RING_5
zf-C3HC4_4
Beta-prop_WDR90_POC16_2nd
RING_XB3-XBAT31
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_Vps41
WD40_like
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_IFT122_1st
zf-rbx1
zf-RING_10
zf_C2H2_10
zf-RING_11
Sina_RING
Motif
Other DBs
NCBI-GeneID:
122918657
NCBI-ProteinID:
XP_044123289
LinkDB
All DBs
Position
10:56887730..57132021
Genome browser
AA seq
729 aa
AA seq
DB search
MSGSRQAGSGSAGTSPGSSAASSVTSASSSLSSSPSPPSAAVAAAASGGAAQAAGSGGLG
GPARPVLVAAAVSGSGGGAVSAGLSRLSCAARPSAGVGGSSSSLGSGSRKRPLLAPLCNG
LINSYEDKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNIDH
LYPNFLVNELILKQKQRFEEKRFKLDHSVSSTNGHRWQIFQDLLGTDQDNLDLANVNLML
ELLVQKKKQLEAESHAAQLQILMEFLKVARRNKREQLEQIQKELSVLEEDIKRVEEMSGL
YSPVSEDSTVPQFEAPSPSHSSIIDSTEYSQPPGFSGSSQTKKQPWYNSTLASRRKRLTA
HFEDLEQCYFSTRMSRISDDSRTASQLDEFQECLSKFTRYNSVRPLATLSYASDLYNGSS
IVSSIEFDRDCDYFAIAGVTKKIKVYEYGTVIQDAVDIHYPENEMTCNSKISCISWSSYH
KNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWS
TNLDNSVASIEAKANVCCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAV
SYAKFVSGEEIVSASTDSQLKLWNVGKPYCLRSFKGHINEKNFVGLASNGDYIACGSENN
SLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALPDGESNVLIAANSQ
GTIKVLELV
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgtctgggagccgccaggccgggtcgggctccgccgggaccagccctggctcctcggcg
gcctcctcggtgacttccgcctcctcgtccttgtcctcttccccgtcgcccccttccgcg
gcggtggcggcggcggcgtccggcggagcggcccaggccgcgggttcgggcggcctcggg
ggcccggcgcggcctgtgctggtggcggccgccgtgtccggcagcggcggcggggcggtg
tccgcgggcctgtctcggctcagctgcgcggccaggcccagcgccggcgtgggagggagc
agctccagcctcggcagcggcagcaggaagagacctctgctcgcccccctgtgcaacggg
ctcatcaattcctacgaggacaaaagcaacgacttcgtgtgccctatctgctttgatatg
attgaggaagcatacatgacgaaatgtggccacagcttttgctacaagtgtattcatcag
agtttggaggataataatagatgtcccaagtgtaactatgttgtggataatattgaccat
ctgtatcctaatttcttggtgaatgagctcattctcaaacagaagcaaagatttgaggaa
aagaggttcaaattggaccactcagtgagtagcaccaatggccacaggtggcaaatattt
caggatttgttgggaactgatcaagataaccttgatttggccaatgtcaacctcatgttg
gaattactagtgcagaagaagaaacaactggaagcggaatcacatgcagcccaactacag
atccttatggaattcctcaaggttgcaagaagaaataagagagagcaattggaacagatc
cagaaggagctgagtgttttggaagaggatattaaaagagtggaagaaatgagcggcttg
tactctcctgtcagtgaggatagcacagtacctcaatttgaagctccctctccatcacac
agtagtattattgattccacagaatacagccagcctcctggtttcagtggcagttctcag
acaaagaagcagccttggtataacagcacattagcatcaagaagaaaacgactcactgct
cattttgaagacttagagcaatgttacttttctacaaggatgtctcgtatttcagatgat
agtcgaactgcaagccagttggatgaatttcaggaatgcttgtctaagtttactcgatac
aattcagtacgacctttggctacattgtcgtatgctagtgatctgtataatggttccagc
atagtctccagtattgaatttgaccgggattgtgactattttgcaattgctggggttaca
aagaaaattaaagtttatgaatatggcacagtcattcaggatgcggtggatattcattac
cctgaaaatgaaatgacctgcaattccaaaatcagctgtatcagttggagtagttaccat
aagaatctgttagccagcagtgattatgaaggcaccgtcatcctatgggatggatttaca
ggacagaggtcaaaggtctatcaggagcatgagaaaaggtgttggagtgttgactttaat
ttgatggatcctaaactcttggcttctggttctgatgatgcaaaagtgaagctatggtct
accaacctagacaactcagtggcaagcattgaggcgaaggctaatgtgtgctgtgttaaa
ttcagcccctcttctcgataccatttggctttcggctgtgcagatcactgtgtccactac
tatgatcttcgtaacactaagcagccaatcatggtattcaaaggacaccgaaaagcagta
tcttatgcaaagtttgtgagtggtgaggaaattgtttctgcctcaacagatagccagcta
aagctgtggaatgtagggaaaccatactgtctacgttccttcaagggtcacatcaatgaa
aaaaattttgtaggccttgcttccaatggtgattatatagcttgtggaagtgagaacaac
tctctttatttgtactataaaggactttctaagactttgctaacttttaagtttgatacg
gtcaaaagtgttctggataaagaccgaaaagaagatgatacaaatgaatttgttagtgct
gtgtgctggagggccctgccagatggggagtccaatgtgctgattgctgctaacagtcag
ggtacaattaaggtgctggagttggtatga
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