Neogale vison (American mink): 122919092
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Entry
122919092 CDS
T08764
Symbol
HTT
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
nvs
Neogale vison (American mink)
Pathway
nvs05016
Huntington disease
nvs05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
122919092 (HTT)
05022 Pathways of neurodegeneration - multiple diseases
122919092 (HTT)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nvs03019
]
122919092 (HTT)
04131 Membrane trafficking [BR:
nvs04131
]
122919092 (HTT)
03029 Mitochondrial biogenesis [BR:
nvs03029
]
122919092 (HTT)
Messenger RNA biogenesis [BR:
nvs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122919092 (HTT)
Membrane trafficking [BR:
nvs04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
122919092 (HTT)
Mitochondrial biogenesis [BR:
nvs03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
122919092 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_EF3_N
Motif
Other DBs
NCBI-GeneID:
122919092
NCBI-ProteinID:
XP_044123819
LinkDB
All DBs
Position
11:complement(66737571..66876372)
Genome browser
AA seq
3130 aa
AA seq
DB search
MATLEKLMKAFESLKSFQQQQQQQQQPPPPPPQLPQPPPQAQPPPPQPQPPPPPPPPPPP
GPAVAEEPLHRPKKELSATKKDRVNHCLTICENIVAQSLRNSPEFQKLLGIAMELFLLCS
DDAESDVRMVADECLNRVIKALMDSSLPRLQLELYKEIKKNGAPRSLRAALWRFAELAHL
VRPQKCRPYLVNLLPCLTRISKRPEESVQETLAAAVPKIMASFGNFANDNEIKVLLKAFI
ANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNVLLGLLVPVESEHSTLLILGVLL
TLRYLVPLLQPQVKDTSLKGSFGVTRKELEVSPSTEQLIQVYELTLHYTQHQDHNAVTGA
LELLQQLLRTPPPELLRALRAPGGGPLSTVRHQPSCRSRSGSIVEILAGGGSSCSPVLSR
KQKGKVLFGEAAALEDDSESRSEGSSPAFTASVKGEIGGELAASSGVSTPGSASSAADSV
GHDIITEQPRSQHTLQPDSVDLTSCDLASAATDGDEEDILSHSSSQISAVPSDPAMDLND
GTQASSPVSDSSQTTTEGPDSAVTPSDSSEIVLDGADSQYSGMQIGQPPDEDEEATGVLP
DEDADAFRSSSVALQQAHLLRSMGHSRQASDSSIDKFVSKDEAAEPGDQENKPCRIKGDI
GQSTDDDSVPLVHCVRLLSASFLLTGEKNVLVPDRDVRVSVKALALSCVGAAVALHPESF
FSKLYKVPLDTMEHPEEQYVSDILNYIDHGDPQVRGATAVLCGTLISSILSRSRFQVGDW
MGTVRALTGNTFSLVDCIPLLQKTLKDESSVTCKLACTAVRHCLTSLCSSSHSELGLQLV
TDLLTLRDSSYWLVRTELLETLAEIDFRLVSFLEAKAENLHRGTHHYTGLLKLQERVLHD
VVIYLLGDEDPRVRHVAAAALIRLVPKLFYKCDQGQADPVVAVARDQSSVYLKLLMHETQ
PPSHFSVSTITRIYRGYNLLPTMTDVTVENNLSRVIAAVSRELVTSTTRALTFGCCEALC
LLSTAFPVCIWSLGWHCGVPPLSASDESRKSCTVGMATMILTLLSSAWFPLDLSAHQDAL
ILAGNLLAASAPKSLRSSWTSEEEVSPAAAKQEEVWPALGDRTLVPMVEQLFSHLLKVIN
ICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGEPASVPLSPKKGSEASPAS
RQSDAPGPVTANKSSSLGSFCHLPSYLKLHDVLKATHANYKVTLDLQNSTEKFGGFLRSA
LDVLSQILELATLQDIGKCVEEILGYLKSCFSREPVMATVCVQQLLKTLFGTNLASQFDG
LSSNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALADASLRNMVQAEQDHDPSGW
FDVLQKVSTQLKTNLTSATKNRADKNAIHNHIRLFEPLVIKALKQYTTTTSVQLQRQVLD
LLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYERYH
SKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELETQKEV
VVSMLLRLVQHHQVLEMFILVLQQCHKENEDKWKRLSRQIADVILPMLAKQQMHIDSHEA
LGVLNTLFEILAPSSLRPVDMLLRSMFVTPDTMASVSTVQLWISGILAILRVLISQSTED
IVLSRIQELSFSPYLICCPVINRLRDGDSTSTPEEHSEGRQIKSLPEETFSRFLLQLVGI
LLEDIVTKQLKVEMNEQQHTFYCQELGTLLMCLIHIFKSGMFRRITAAASRLFTVDSTDS
SFYGLERLNARVRAMVPTHPALVLLWCQILLLVSHTDYRWWAEVQQTPRRRSLSSTKSLS
PQMPGEEEDPGAACKLGMCNREIVRRGALILFCDYVCQNLHDSEHLTWLIVNHIQDLISL
SHEPPVQDFISAVHRNSAASGLFIQAIQSRCENLSTPTTLKKTLQCLEGIHLSQSGAVLT
LYVDKLLCTPFRVLARMVDTLACRRVEMLLAANLQSSAAQLPAEELSRIQEYLQSSGLAQ
RHQRLYSLLDRLRLATAPGSRGPSPPVTSHPLDGDGPLALETMIPDKDWYLRLVKSQCWT
RSDSALLEGAELVNRLPPSDMSTFMMNSEFNLSLLAPCLGLGMREVSGGQRSPLFEAARL
ATLDRVTSLVQQLPAAHHVFQPFLPVEATAYWNKLNDLFGDAMLYWSLTTLARALAQYLL
VFPKLPSHLHLPPEKERDTVKFVVMTLEALAWHLIHEQIPLSLDLQAGLDCCCLALQLPS
LWSTLSSPEMVTHACSLIHCVRFVLEAVVVQPGDQLLSPERRMNTPKASRENEIDSDTQN
PAYITAACAMVAEMVESLSSVLALGHKRNSNTPAFLTSVLRNIIISLARLPLVNSYTRVP
PLVWKLGWSPKPGGDFGTAFPEIPVEFLQEKEVFKEFIYRINALGWTSRTQFEETWATLL
GVLVTQPLVMEQEESPPEEDTERTQINVLAVQAITSLVLSAMTVPVAGNPAVSCLEQQPR
NKPLKALDTRFGRKLSIIRGIVEQEIQAMVSKRENIATHHLYQAWDPVPSLSPATTGALI
SHDKLLLQINPERELGNMSYKLGQVSIHSVWLGNSITPLREEEWEEEEEEEADVPAPASP
PTSPVNSRKHRAGVDIHSCSQFLLELYSRWILPSGSARRTPIILISEVVRSLLVVSDLFT
ERTQFEMMYSALTELRRVHPAEDEILTQYLVPATCKAAAVLGMDKAVAEPVSRLLESTLR
SSHLPSKVGALHGALYVLECDLLDETAKQLVPVISDYLLSNLKAVAHCVNIHSQQHVLVM
CATAFYLIENYPLDVGPEFSASIIQMCGVMLSGSEESTPSIIYHCVLRGLERLLLSEQLC
RLDAESLVKLSVDRVNVHSPHRAMAALGLMLTCMYTGKEKLSPGRSSDPSPATPDSESVI
VAMERVSVLFDRVRKGFPCEARVVARILPQFLDDFFPPQDVMNKVIGEFLSNQQPYPQFM
ATVVYKVFQTLHTTGQSSMVRDWVMLSLSNFTQRTPVAMAVWSLSCFFVSASTSPWVSAV
LPHVISRMGKLEQVDINLFCLVATDFYRHQIEEELDRRAFQSVFEVVAAPGNPYHRLLTC
LRNVHKVAAC
NT seq
9393 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccctggagaagctcatgaaggccttcgaatccctcaagtccttccagcagcaa
cagcagcagcagcagcagcctccgccgccgccgcctcagcttcctcagccgccgccgcag
gcgcagccgccgccgcctcagccgcagccgcccccgcccccgccgccgccgccgcccccc
ggcccggccgtggccgaggagccactgcaccgaccaaagaaagaactctcagccaccaag
aaagaccgcgtgaaccattgtctgacaatatgtgaaaacatagtggcacagtcactcaga
aattctccagaatttcagaaacttctgggcatcgctatggaactttttctgctgtgcagc
gatgatgcagagtcggatgtccggatggtggctgatgagtgcctcaacagagtcatcaaa
gccctgatggactccagtctgccgaggctgcagttagagctgtataaggaaatcaaaaag
aacggtgctccccggagccttcgtgccgccctgtggaggtttgctgagctggctcacctg
gtccggcctcagaagtgcaggccttacttggtaaaccttttgccttgcctgactcgaata
agcaagagacctgaggaatctgttcaggagaccttggctgcagctgtacccaaaattatg
gcttcttttggcaattttgcaaatgacaatgaaattaaggttctactaaaggctttcata
gcgaatctgaagtcaagctccccgaccattcggcgaacggcggctggctcagcagtgagc
atctgccagcactcgaggaggacccagtacttttacagctggctattgaatgtgctcttg
ggcttgctggtccccgttgagagtgaacattccaccctcctgattcttggggtgctgctc
acactcaggtacctggtgcccttgctgcagcctcaggtcaaagacacgagcctgaaaggc
agctttggggtgacgcggaaggaactggaagtctcaccctcaacagagcagctcatccag
gtctatgaactgaccttgcactacactcagcaccaagaccacaacgcagtgacaggcgcg
ctggagctcctgcagcagctgttgcggacgcccccgcctgagctcctgcgggccctgaga
gctccaggcggcgggccactctccactgtgcgccaccagcctagctgccggagccgcagc
ggcagcatagtggagatcctggctggagggggttcttcatgcagccctgttctttcaagg
aaacaaaaagggaaagtgctctttggagaagcagcagccttggaggatgactccgagtcc
agatcggagggcagcagccccgccttcacagcctcagtcaaaggtgagattggcggcgag
ctggctgcgtcttctggagtctccactcctggctctgccagttcagctgcggactctgtg
ggccacgacatcatcaccgagcagccccggtcacagcatacgctgcagccagactcggtg
gatctgaccagctgtgacctggcgagcgcagccactgacggagacgaggaggatatcctg
agccacagctccagccagatcagtgccgtcccgtctgacccagccatggacctgaatgat
ggcacccaggcctcctccccagtcagcgacagctcccagaccaccactgaggggcctgat
tcagctgtgaccccttcggacagttctgaaattgtgttagacggtgctgacagccaatat
tcggggatgcagatcggacagccaccggacgaggatgaggaagccacgggtgtccttcca
gatgaagatgcagatgctttccggagctcttcagttgctcttcagcaagcacatttactg
agaagcatgggccacagcagacaggcctctgacagcagcatcgataaatttgtctccaaa
gatgaagctgctgaaccaggagatcaagaaaacaagccttgccggatcaaaggtgacata
gggcagtctaccgatgatgattctgttcctcttgtccattgtgtccgccttctgtctgct
tcatttttgctgactggggagaaaaatgtgttggttccggatagggacgtgagggtcagc
gtgaaggcgctggcgctcagctgtgtgggagctgctgtggcccttcatcctgagtccttc
ttcagcaaactttataaagtgcctcttgacaccatggagcatcctgaggagcagtatgtg
tcagacatcctgaactacattgatcacggagacccccaggtcagaggagccacggctgtt
ctctgtgggaccctcatctcctccatcctcagcaggtcccgcttccaagtgggggactgg
atgggcaccgtcagagccttaacaggaaatacattttctctggtggactgcattcctttg
ctgcagaaaactttgaaggatgaatcttctgtgacttgcaagttggcttgtacagctgtg
aggcactgtctcacgagtctttgcagcagcagccacagcgaactggggctgcaactggtc
accgacttgctgaccctgagggacagctcctactggctggtgaggacggagcttctggag
actctagcagagattgactttaggttggtgagctttttggaggcaaaagcagaaaacctg
cacagagggacccatcattacacagggcttttaaaactgcaagaacgagtgctccatgat
gtggtcatctatctgctcggggacgaggaccccagggtgcggcatgttgccgcagcggcc
ttaataaggcttgtcccgaaactgttctataaatgcgaccaaggacaagccgaccccgtc
gtggctgtggcgagagatcaaagcagtgtttacctgaagctcctcatgcacgagactcag
cctccatctcacttctctgtcagcaccatcaccagaatatacagaggctataacttactg
ccaaccatgacagacgtcacagtggaaaacaacctctccagagtcatcgcggccgtttcc
cgcgaactggtcacgtcgaccacgcgcgcactcacctttgggtgctgcgaagctctgtgt
ctcctttcaacagcctttcctgtctgcatttggagtttaggttggcattgtggggtgccc
ccactgagcgcctctgacgagtcaagaaagagctgtactgttggcatggccacgatgatc
ctcaccttgctctcgtcagcgtggttcccactggatctctcagcccatcaggatgctttg
attttagcgggaaacttgcttgcagccagtgcccccaaatctctgagaagttcgtggacc
tccgaagaagaggtcagcccagcagccgccaagcaggaagaggtctggccagctctgggt
gaccggaccctggtgcccatggtggaacagctcttctcgcacctgctgaaggtgattaat
atctgtgctcacgtcttggacgacgtggctcccggaccagcaataaaggcagccttgcca
tctctgacaaaccctccatctttgagtcccatccgacggaagggaaaggagaaagaaccc
ggagagccagcctctgtgcccttgagccccaagaaaggcagtgaagccagtccagcctct
cgacaatctgatgccccagggcctgttacagcaaataagtcctcatcgctggggagtttc
tgtcaccttccttcgtacctcaaattgcacgacgtcctgaaagctactcacgccaactac
aaggttaccttggatcttcagaacagcactgaaaagtttggaggctttctgcgctctgcc
ttggatgttctctctcagatcctggagctggcaacgctgcaggacattgggaagtgcgtt
gaagaaatcctggggtatctgaaatcctgcttcagtcgggaaccagtgatggcaactgtt
tgcgttcagcagctgttgaagactctctttgggaccaacttggcctcccagtttgatggc
ttgtcgtccaaccccagcaagtctcagggccgagcacaacgtctgggctcctccagtgtg
aggccgggcttgtaccactactgcttcatggctccatacacgcacttcacccaggcctta
gctgatgccagcctgaggaacatggtgcaggcggagcaggaccacgacccctcagggtgg
tttgatgtccttcagaaggtgtctacccagttgaagaccaacctcacaagcgctacaaag
aaccgcgcggataagaatgctattcataatcacatccgcttgtttgagcctctggttatt
aaggctctaaaacagtacacgaccaccacgtccgtgcagctgcagaggcaggtgctggac
ctgctggcgcagctggtgcagttacgggtcaattactgtctgctggactctgatcaggtg
tttattggatttgtgctgaagcagtttgaatacattgaagtgggccagttcagggaatca
gaggcaattattccaaacatctttttcttcctggtattactatcttatgaacgctatcat
tcaaaacagatcattggaattcctaaaatcattcagctgtgtgatggcatcatggccagt
gggaggaaggctgtgacacatgccattccagctctgcagccaatagtgcatgacctcttt
gtactgagagggaccaacaaagccgacgctggaaaagagcttgaaacccaaaaagaggtg
gtggtgtcgatgctgctgagactcgtccagcaccatcaggtgctggagatgttcatcctg
gttttgcagcagtgccacaaggagaacgaagacaaatggaagcgactgtcccggcagatc
gccgacgtcatcctcccgatgttagccaagcagcagatgcacattgattctcatgaagcc
cttggagtgttaaatactttatttgagattctggccccttcctccctccgtcctgtggac
atgctattacggagtatgtttgtcactccagatacaatggcatctgtaagcactgttcag
ctgtggatctcaggaatcctagccattttgagggttctgatttcccagtcaactgaagat
attgttctctctcgtattcaggagctctccttctccccatatttaatctgctgtccagta
attaataggttaagagacggggacagtacttcaacaccggaagaacacagtgaaggaagg
caaatcaagagtttgccggaggaaacgttttcaaggtttctactacaactagttggcatt
cttttggaggatattgttacaaagcagctcaaagtggaaatgaatgaacagcaacatact
ttctattgtcaagagctaggcacgctgctaatgtgtctgattcacatcttcaagtctgga
atgttccgaagaatcacagctgctgcctccagactcttcacggtagatagcaccgacagc
agtttctacggcctggagaggctgaacgcacgggtgcgcgccatggtgcccacgcacccg
gccctggtgctgctctggtgccagatcctgctgctggtcagccacaccgactaccgctgg
tgggcagaggtgcagcagacccccaggagacgcagtctgtccagtacgaagtcactcagc
cctcagatgcctggagaggaggaggaccccggtgcggcctgcaagcttgggatgtgcaat
agagagatagtgcgaaggggagctctcattctcttctgcgattatgtctgtcagaacctg
cacgattcagagcacctaacgtggctcatcgtgaatcatatccaggacctcatcagtctg
tcccacgagcctcccgtgcaggatttcattagtgctgttcaccggaactctgccgccagt
ggcctcttcatccaggcaattcagtcccgctgtgaaaatctttccaccccgaccaccctg
aagaagacacttcagtgcttggaagggatccacctcagccagtcaggtgctgtgctgacg
ctgtacgtggacaagctgttgtgcactccgttccgtgtgctggctcgcatggttgacacg
ctggcttgtcgccgggtggaaatgcttctggctgcaaatttacagagcagtgcggcccag
ctgcccgcagaggagctgagcaggatccaggagtaccttcagagcagcgggctggcgcag
agacaccagaggctctactccctgctggacaggcttcgtctcgccaccgcacctggctca
cgcggcccttctcctccggtcacgtcccacccgctggacggggatgggcccctggcactg
gagaccatgattccagacaaagactggtacctgcgtctagtcaaatcccagtgctggact
agatcagattctgcgctgctggaaggggcagaactggtgaatcggcttcctcccagtgac
atgagtacattcatgatgaactcggaattcaacttaagcctgctggccccatgcctgggc
ctgggcatgcgcgaagtctctgggggccagaggagccccctttttgaagcagctcgccta
gcaactctggaccgtgtgaccagcctggttcagcagcttcctgctgcccatcatgtcttc
cagccattcctgcctgtggaggccactgcctactggaacaagttgaatgatctatttggg
gatgccatgttatattggtccttgaccactctggcccgggccctggcccagtacctgctg
gtgtttcccaaactgcccagccatttgcacctcccccctgagaaggagagggacactgtg
aagtttgtggtcatgaccctcgaggccctggcatggcatttgatccatgagcagatcccg
ctgagtctggaccttcaggcgggcctggactgctgctgcctggccctgcagctccccagc
ctctggagcacactctcctccccagagatggtgacccatgcctgctctctcattcactgt
gtccgcttcgttctggaagctgttgtggtgcagcctggggaccagcttcttagtccagaa
agaaggatgaacaccccgaaggcttccagagagaacgaaatagattcagacacacaaaac
ccggcatacatcaccgcagcctgtgcgatggtggcagagatggtggagtctttgtcatcg
gtgttagccttggggcacaaaaggaacagcaacacccccgcgtttctcacatcagtgctg
aggaacatcatcatcagcctggctcgcttacccctcgtcaacagctacacacgcgtgccc
cccttggtttggaagctcggatggtcgcccaagccaggaggggactttggcacagccttc
cctgagatcccggtagagttcctccaggagaaggaagtctttaaagagttcatctaccgc
atcaatgcactaggctggaccagccgcactcagttcgaggagacgtgggccaccctcctt
ggtgtcctggtgactcagcccctggtgatggagcaggaggagagcccaccagaagaagac
acagagaggacccagatcaatgtcctggctgtgcaggccatcacgtcgctggtgctgagt
gcaatgactgtgcctgtggccggcaaccccgctgtgagctgcttggagcagcagccccgg
aacaagcccctgaaagccctcgacaccaggtttgggaggaagctgagtattatccgagga
attgtagagcaggaaatccaagcgatggtttcaaagagagagaacatcgccacccatcac
ttataccaggcgtgggaccccgtcccttctctgtctccagctacgacaggtgccctcatc
agccacgacaagctcctgctacagatcaaccccgagcgggagctggggaacatgagctac
aagcttggacaggtgtccattcactccgtgtggctggggaacagcatcacgcccctgaga
gaggaggagtgggaggaagaggaagaggaggaagctgatgtccctgccccggcgtcaccg
cccacgtcacccgtcaactccaggaagcaccgggcgggggtcgatatccactcctgctcc
cagtttctgctggagttgtatagtcgctggatcctgccgtcaggttcagcccgaaggacg
cccatcatcctgatcagtgaagtggttcgatctctcctggtggtgtcggacttgttcacg
gagcgcacccagtttgagatgatgtactcggcgctcacagagctgcggagggtgcaccct
gccgaagacgagattctcacccagtacctggtgcctgccacctgcaaggcggctgctgtc
ctcgggatggacaaggctgtggcagagccagtcagccggctgctagagagcacgctgagg
agcagccatctgcccagcaaggttggggccctgcacggtgcgctctatgtgctagagtgc
gaccttctggatgagacagcaaagcagctcgtcccggtcatcagcgactatctcctctcc
aacctcaaggcggtggcccactgcgtgaacattcacagccagcagcacgtgctggtcatg
tgcgccaccgccttctacctgatcgagaactatcccctggacgtgggcccagagttctca
gcctcaatcatacagatgtgtggggtgatgctgtccggaagtgaggaatccaccccatcc
atcatctaccactgcgttctgcggggcctggagcgcctcttgctctcagaacaactctgc
cggctggatgcagagtccctggtcaagctgagtgtggacagagtgaatgtgcacagccca
caccgggccatggccgccctgggcctgatgcttacctgcatgtacacaggaaaggagaaa
ctcagtccgggcagaagctcagaccccagccctgcaaccccagacagcgagtcagtgatt
gtggcaatggagcgcgtgtctgttctttttgacagggtcaggaaagggttcccctgtgaa
gccagagtggtggcacggatccttcctcagtttttggatgacttcttcccaccccaggac
gtcatgaacaaagtcattggagaatttctgtccaaccagcagccgtacccacagttcatg
gccactgttgtgtacaaggttttccagactctacacaccactgggcagtcgtccatggtc
cgggactgggtcatgctgtccctctccaacttcacacagaggaccccagtggccatggcc
gtgtggagcctctcctgcttcttcgtcagtgcttccaccagcccatgggtctcggctgtc
cttccccacgtcatcagcaggatgggcaagctggagcaagtggacattaacctcttctgc
ctggtggccacggacttttacagacaccagatagaagaggagctggaccgccgggccttt
cagtctgtgttcgaggtggtcgcggcaccaggaaacccgtatcatcgactgctgacttgt
ttgcggaacgtccacaaggtcgctgcgtgctga
DBGET
integrated database retrieval system
