Nocardia vulneris: V7968_19245
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Entry
V7968_19245 CDS
T10816
Name
(GenBank) DEDD exonuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
nvu Nocardia vulneris
Pathway
nvu03030
DNA replication
nvu03430
Mismatch repair
nvu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nvu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V7968_19245
03430 Mismatch repair
V7968_19245
03440 Homologous recombination
V7968_19245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nvu03032
]
V7968_19245
03400 DNA repair and recombination proteins [BR:
nvu03400
]
V7968_19245
Enzymes [BR:
nvu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
V7968_19245
DNA replication proteins [BR:
nvu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
V7968_19245
DNA repair and recombination proteins [BR:
nvu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
V7968_19245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
GIY-YIG
DEDDh_C
UVR
RNase_H_2
P_T4SS_TraN
Motif
Other DBs
NCBI-ProteinID:
WWW23064
LinkDB
All DBs
Position
4208938..4210791
Genome browser
AA seq
617 aa
AA seq
DB search
MTVPAPRKAAAQQLVFDDLDTPLYDTTFVVVDLETTGTSPGADAITEIGAVKVRGGEVLG
EFATLVNPGRAVPPAIVQVTGITTAMVYAAPKIDAVLPGFLEFAAGAVLVAHNARFDMAF
LRAAAAQCETVWPSATVLCTVKLARRVLGRDEAPSVRLSALAQLLGASTQPTHRALDDAR
ATVDVLHALIGRVGNQGVHSLTELVDYLPDVTPRQRAKRFLAADLPTAPGVYLFRGPSDE
VLYIGTAVNLRRRVRNYFTGSETRGRMKEMVALATRVDHVVCAHALEAGVRELRLLVAHT
PPYNRRSKFPKRAWWLTLTDEPFPRFAVVRTPNRDALGPFNSRMDAADLALIIAEFTGLR
TCSTRLPRRGTHECPPAVVGGCPAAVTGTPINTEEYAPAPALVRALFAGRSDAPVRAMLD
RIETHSRAQHFEAAARLRDRAVAVIRALHRTQRLAAVARIAELVTAHPDGAGGWEFSVIR
YGRLAAAGTAPRGVPPMPVVEHLVAAAETVIPEGGVPPEAPTPDVAPPAPETQKPPAQPR
SEGAEEWVSINVPPLRGASPEEAALVARWLARAGVRIVRSTEGYREPMYGAGRWLGWAEV
ADVAARSRSVEEEYTER
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgtccccgctccgcgcaaggccgcagctcagcagttggtcttcgacgacctcgac
acgcccctctacgacaccaccttcgtggtggtcgacctggagaccacgggtaccagtccc
ggcgccgacgcgatcaccgagatcggcgcggtcaaggtgcgcggcggcgaagtgctcggc
gaattcgcgacgctggtcaacccgggacgggcggtgccgcccgcgatcgtccaggtcacc
ggcatcaccaccgcgatggtgtacgcggcgccgaagatcgacgccgtgctgcccgggttc
ctggagttcgccgcgggcgcggtattggtcgcgcacaacgcgcggttcgacatggcgttc
ctgcgggccgccgcggcccagtgcgagacggtgtggccgtccgcgacggtgctgtgcacg
gtgaagctggcccggcgcgtgctcggccgggacgaagcgccctcggtccggttgagtgca
ctcgcccagttgctcggcgcgagtacacaaccgacgcaccgcgctctcgacgacgcgcgc
gcgaccgtcgacgtgttgcacgcgctcatcggccgggtcggcaaccagggcgtgcacagc
ctcaccgagttggtcgactacctgcccgacgtcaccccgcgccagcgcgccaagcgtttc
ctggccgcggacctgcccaccgcgcccggcgtctacctgttccgcgggccgtccgacgaa
gtcctctacatcggcacggcggtgaatctgcgccgccgcgtgcgcaactacttcaccgga
tcggaaacccggggtcggatgaaagaaatggtcgccctcgccacccgggtcgaccatgtg
gtctgcgcgcacgccctcgaagcgggtgtgcgggaactgcgactgctcgtcgcgcacacc
ccgccctacaaccggcggtccaagtttcccaagcgggcctggtggctcacgctcaccgac
gaacccttcccacggttcgccgtcgttcgcacgccgaaccgagatgcgttggggcccttc
aactctcggatggacgccgccgatctcgcgctgatcatcgccgaattcaccggcctgcgg
acctgcagtacccgtctgccccggcgcgggacgcacgagtgtccgcccgccgtcgtcggc
ggctgtcccgccgccgtgacagggactcctattaatacagaggaatacgcgcccgccccc
gcgctcgtgcgcgccctgttcgccggacgctccgacgcgcccgtccgcgccatgctcgac
cgcatcgaaacccactcccgcgcccagcatttcgaggctgccgcgcgcctgagggaccgc
gccgtcgccgtgatccgcgccctgcaccgcacccagcgtctcgccgccgtcgcccgcatc
gccgaactcgtcaccgcccaccccgacggtgcgggcggctgggaattctctgtcatccgt
tacggccgcctcgccgccgccggtaccgccccccgcggcgtcccacccatgcccgtggtg
gaacacctcgtcgccgccgccgaaaccgtgatccccgaaggaggagtgccccccgaagcg
cccactcctgacgtggccccacccgcccccgaaacccagaagcccccggcccagccgaga
tccgagggtgcggaggagtgggtttcgatcaatgtgccgccgttgcggggggcttcgccg
gaggaggcggcgttggtggcgcggtggttggcgcgggcgggggtgcggattgtgcggagt
acggaggggtatcgggaaccgatgtacggggcggggcgctggttggggtgggcggaggtg
gcggatgtcgcggctcggagccgttcggtggaggaggagtacacggagcggtga
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