Nocardia vulneris: V7968_27180
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Entry
V7968_27180 CDS
T10816
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
nvu Nocardia vulneris
Brite
KEGG Orthology (KO) [BR:
nvu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nvu03019
]
V7968_27180 (hrpB)
Enzymes [BR:
nvu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
V7968_27180 (hrpB)
Messenger RNA biogenesis [BR:
nvu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
V7968_27180 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
AAA_30
AAA_19
AAA_25
AAA_22
RoxA-like_Cyt-c
HA2_N
ResIII
UTRA
AAA
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
WWW16617
LinkDB
All DBs
Position
5934032..5936473
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AA seq
813 aa
AA seq
DB search
MKLPELPELPVRPALDGLVETLAERATAVLVAPPGTGKTTLVPLALAAASTGRVLVAEPR
RLAARAAAARMAALLGEPVGETVGYSVRGDRRVGPGTRIEVVTSGLLVRRLQGDPELAGV
DVVMLDECHERHLDADLLLALLLDARAGLRPDLRVLATSATVAAERLSELLDADGGAPVV
QVEGRTYPVRTTYVPQVPRERVEAQVARATRAALARTDGDVLVFLPGAAEIRRTTALLAD
LSEVDVVPLHGRLSAAGQDTALRPGVRRRVVLATAVAESSLTVPGVRAVVDSGLARVPRI
DRGRGLSGLATVRVSAAVAEQRAGRAGREAPGHVWRCWPEYEHATLPAYPEPEIRTADLT
RLALELACWGTADGHGLAWWDAPPPGGLAAGREVLRALGAVHDDGTVTDRGRRIAGIGLH
PRMARALLDGAAEVGARAAAEVVTVLDDDTLLSGVDLVAGLRALRRARPGRWQREVARLA
RAVAAPDGRDDPAFVVALAYPERLARRRAQGSASYLMAGGTAVTLPPGSGMGDAEWLAVG
VATRDPGRSDGQIRLAAVADEQLARRAAASLLRTVDEVDWVDGDVVARRVERLGAIVLSE
RPIRDPDRELLSAAVRRGLQEHGPEVLRWDAEAVSLRHRLDFLHRTLGAPWPAVDDAALL
ADAELWLGPELAVARTRADLARIDAGTALRRLLPWPEAAQLDELAPERLTVPSGSRPRLD
YSADPPVLAVKVQEVFGWADAPRLAGGRVPIVLHLLSPAQRPVAVTADLASFWQAGWLQV
RADLRGRYPKHAWPEDPTTVPAHRGTARNAGRN
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgaaactgcccgaactgcccgagctaccggtccgccccgcactcgatggtctcgtcgag
acgttggccgagcgggcgaccgctgtgctggtcgcaccgccggggacagggaagacgacc
ctggtgccgctggccttggcggcggcgagcaccgggcgggtgctggtggccgagccgcgg
cggctggccgcgcgggccgcggcggcgcggatggcggccttgctcggcgagccggtgggg
gagaccgtcgggtactcggtgcgcggagaccggcgcgtcgggccgggtacccggatcgag
gtggtcacctccggactgctggtgcgacggttgcaaggcgaccccgaactggcgggggta
gatgtggtgatgctcgacgagtgtcatgagcggcacctcgacgcggatctgctgctggcc
ttgctgctcgacgccagggcggggctgcgaccggacctgcgagtgctcgctacctcggca
accgttgcagccgaacggctttcggaactgctcgacgccgacggcggtgcgccggtggtg
caggtcgaggggcggacgtacccggtgcggacgacgtatgtgccgcaggtgccccgggag
cgggtggaagctcaggtcgcgcgggcgacccgggccgcgctcgcccgcaccgacggcgat
gtcctggtctttctgcccggtgccgccgagatccgccggacgacagcgcttctcgccgat
ctgagtgaggtcgatgtcgttccgctgcacggcaggctctccgcggcgggtcaggatacg
gcgctgcgccccggcgttcggcggcgcgtcgtgctggccacggccgtggcggaatcgagc
ctgacggtgcccggcgtacgggccgtggtggattcggggctggcccgggtgccccggatc
gatcgggggcgcggtctgtccgggcttgcgacagtgcgggtttcggcggcggtcgccgaa
cagcgcgcgggccgggccgggcgcgaggcccccggccacgtgtggcggtgctggccggaa
tacgagcacgccaccctgcccgcgtatccggagccggagatccggacggcggatctcacg
cggctggcattggaattggcatgctggggcacggccgacggccatggcttggcctggtgg
gacgcaccgccgcccggcgggctggcggcgggccgggaagtgttgcgcgcgttgggcgct
gtgcacgacgacggtacggtcaccgaccgtgggcggcgcatcgccgggatcggtctgcat
ccccggatggcgcgcgcgttgctcgacggcgcggcggaggtgggcgcgcgagcggcggcg
gaggtggtgaccgtgctagacgacgacaccctgctctccggcgtcgatctcgtggccggt
ctgcgcgcgctgcggcgtgcgcgtcccggccgctggcagcgtgaagtcgcccggctggcc
cgcgcggtggctgcgccggacggtcgtgacgatccggctttcgtggtggcactggcgtat
ccggaacggctcgcgcggcgacgtgcgcagggctcggccagctacctcatggccggtggt
accgcggtcacgctgccgccgggctccggaatgggtgatgcggagtggttggcggtcggg
gtggcgacgcgcgatccagggcgttccgatggacagatccggctggcggcagtcgccgac
gaacaactggcgcgccgcgcggcggcgagcctgctgcgcaccgtggacgaggtcgactgg
gtggacggcgacgtggtggcccgtcgggtcgaacgcctgggggcaatcgtgctgtcggag
cggccgattcgcgatcccgaccgtgaattgctcagtgccgcagtgcgtcgcggcctgcag
gagcacggccccgaagtgctgcgctgggatgccgaggcggtctcgctgcggcaccgcctc
gacttcctgcaccgcaccctcggcgcgccgtggcccgcggtcgacgacgcagcgttgctc
gccgacgccgaactctggctcggcccggaactcgccgtcgcccgcactcgcgcggacctc
gcccgcatcgatgccggaacggcattgcgtcggctactgccttggccggaggccgcccag
ctggacgaattggcaccggaacggctgacggtcccgtcgggtagtcgtccccgcctcgac
tactcggcggacccgcccgtgctcgcggtcaaggtgcaggaggttttcggttgggcggac
gcgccgcgcctggccggcgggcgcgtcccgatcgtcctgcacctgctctcacccgcgcag
cgcccggtggcggtcaccgcggacctggcctcgttctggcaagccggttggttacaggtg
cgcgcggacttgcgcgggcgctatcccaaacatgcttggccggaggatcccaccaccgtg
cccgcccatcgcgggacggcgcgcaacgcaggacgcaactga
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