Nocardia vulneris: V7968_42410
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Entry
V7968_42410 CDS
T10816
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
nvu Nocardia vulneris
Pathway
nvu03420
Nucleotide excision repair
nvu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nvu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
V7968_42410
03430 Mismatch repair
V7968_42410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nvu03400
]
V7968_42410
Enzymes [BR:
nvu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V7968_42410
DNA repair and recombination proteins [BR:
nvu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V7968_42410
MMR (mismatch excision repair)
Other MMR factors
V7968_42410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WWW19451
LinkDB
All DBs
Position
complement(9374762..9378547)
Genome browser
AA seq
1261 aa
AA seq
DB search
MTRVTPHQLADALGLPPPTDEQAAVIAAPPGPTLVVAGAGAGKTETMAARVVWMVANRLV
LPDEVLGLTFTRKAAQQLTARIRTRLARLAGAPLLRELDPSGQLRAQLSGAEPEISTYHS
YAGRLLTEHGLLLPVEPSATLLTQTQLWQLAHQVVRSWDGDLDTDRTPVSVTEAILALSG
QLAEHLIEPEQLAEAHTELEKLVHTLPPGPRQRGGPSQTLLNILHVQRERVALLPLVQQL
AEALNRRGALDFGAQMSLAARLAAEHPEVAAAERARFRLVLLDEYQDTGHAQRVLLAALF
GGAPEEMAGDVQPRGTTGAAAPSDGPGRVASTGATAAGRRGRAQNADAAQQAPGRRQRLA
VTAVGDPMQSIYGWRGASAANLPRFATDFPSAPGVPAPILPLLTSWRNPPEALALANLVA
DPLRRKALEGGGVTVDALRAKPDAGAGVVALALTDTVAEERDWLAARIAEEWAARRTAGE
PPPTSAVLVRRNADASPLAEALRAQGLPVEIVGLGGLLATPEVADIVATLRLIAEPGAGS
AAMRVLTGARWRIGVADIAALARRARALSISRFTSGEAQEITDAPALAAALREVAPEPAE
QAGLADALADPGPREQYSESGFARIEALSHELAALRERSGQSLTELVADVERTIGVGVET
QARRAMAGTGAGREHLDAFAEVVAGYAADSGASLGGLLSFLAAAESVENGLEPGEVEVAK
DRVQVLTVHAAKGLEWEIVAVPHVVRGVFPSGTASGTWLGALAELPTTLRGDRRQDDAGE
GVPVLDLADLYDRADLEQAIKAHKEALERRRIDEERRLFYVALTRTERVLLVSSHHWAET
GSSPKGPSDFLLELKHASEAADSPANGVVDVACWDEPPEHNAVNPFTDNPATAEWPRDPL
GNRRDPIEQGAALVRAALEELRLRPPPPRETPSRKESEQAQPGEQSALPLSGTLFDDAAP
EYLEPPDFDDPPPPDPLDGFDGAPPVSDIPPDPYDEPLSAADIAFAAAEFDPERPADPAD
PDGWAADVDALLAEFEAEQSAAEEVELPGQIAATALVELRADPRKLAARLRRPLPFPPSP
LARRGTAFHAWVQRWFGADRLLGLDELPGASDGGPADDVDKELTAMQDAFLNSSWANRSP
LEVEIAFETSIAGTVIRGRMDAVFAEPGGGWIVVDWKTGAEPTSAEEPAVAMQLAVYRLA
WARLMAAREGRPEQEMLGRISAAFHYVRTGRTIAPATLAGPAELAELIRTAAPTGSPSAP
A
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
gtgacccgcgtgaccccgcatcagctggccgacgcgctcgggctcccgccgccgaccgac
gagcaggcggcggtgatcgcggcgccgccgggaccgacgctggtggtcgccggcgccggc
gcgggcaagaccgagacgatggcggcgcgcgtggtgtggatggtggccaaccgcctggtg
ctgccggacgaggtgctggggctcaccttcacccgaaaagccgcgcagcagttgaccgct
cgtatccggacccgcctggcccggttggccggcgcgccgctgctgcgcgagctggacccc
tcggggcagctgcgcgcccaattgtccggcgccgagccggagatcagcacctatcactcg
tacgcgggcaggctgctcaccgaacacggcctgctgctgccggtggaaccgtccgcgacc
ttgctcacccagacccagctgtggcagctcgcgcaccaggtggtgcgctcctgggacggc
gacctggacaccgaccgcaccccggtctcggtcaccgaggcgatcctggccctgtccggc
cagctcgccgagcacctgatcgaacccgaacagctcgcggaggcgcataccgagctggag
aagctggtgcacaccctgccgcccggcccgcggcagcgcggcggacccagccagaccctg
ctgaacatcctgcacgtccaacgtgagcgcgtcgcgctgctgcccctggtccagcaactg
gccgaagcgctgaaccgccgtggcgcactggatttcggcgcccagatgtccctcgccgcc
cgcctcgccgccgaacaccccgaggtcgccgccgccgaacgcgcccgtttccgtctcgtc
ctgctcgacgaataccaggacaccggccacgcccaacgcgtcctgctcgcagccctgttc
ggtggcgcaccggaggagatggcgggtgacgtgcagcccagagggacaaccggcgcggcg
gcaccgagcgacgggcctgggcgtgtggcgagcacgggtgcgacggcggccgggcgtcgt
ggtcgtgcacagaacgccgacgcggcgcaacaggcgccgggccgacggcagcggttggcg
gtgaccgcggtcggtgatccgatgcagtcgatctacggctggcgcggtgcgtcggcggcg
aacctgccgcggttcgcgaccgacttccccagtgcgccgggcgttcccgcgccgatcctg
ccgctgctgaccagctggcggaacccgccggaggcgttggcgctggcgaacctggtggcg
gatccgttgcggcgcaaggcgctcgagggcggcggtgtcacggtggacgcactgcgcgcg
aaacccgatgcgggcgcgggtgtcgtcgcgttggcgctcaccgacaccgtcgccgaggag
cgcgactggctcgccgcccggatcgccgaggagtgggcggctcgtcgcaccgccggggag
ccgccacccacgtcggcggtgctggtgcgccgcaacgccgatgcctcgccgctcgccgaa
gcgttacgcgcgcaaggcttgccggtcgagatcgtcggtctcggcggcctgctcgcgacc
cccgaggtggccgatatcgtcgccaccctgcggttgatcgccgaaccgggcgcgggcagc
gcggccatgcgggtgctgaccggcgcgcgctggcgtatcggtgtcgccgatatcgccgcg
ctcgcccggcgcgcgcgtgcgctctcgatcagcagattcaccagcggcgaagcccaggag
atcaccgacgcccccgccctggccgccgcgctgcgcgaggtcgcgccggaaccggcggaa
caggccggtctcgccgacgcgctcgccgaccccggtccgcgcgaacagtattcggagtcc
ggtttcgcccggatcgaagcgttgagccacgagctcgcggcgctgcgtgaacgcagcggc
cagtcgctgaccgagttggtcgccgacgtggagcgcaccatcggggtcggcgtggagacg
caggcgcgccgggcgatggccggaaccggcgccggccgtgagcatctggacgctttcgcc
gaggtggtcgccggctatgccgccgattccggtgcctcgctcggcgggctgctgtctttc
ctggccgcggccgaatcggtcgagaacggtttggagccgggcgaagtcgaggtcgccaag
gaccgggtgcaggtgctgaccgtgcacgcggccaagggtttggagtgggagatcgtcgcc
gtgccgcacgtggtgcgcggggtgttcccgtccggtaccgcctccggcacctggctcggc
gcgctcgccgaactcccgaccacgctgcgcggcgaccgcaggcaggacgacgcgggcgag
ggggtaccggtgctcgacctggccgatctctacgaccgggccgacctggagcaggcgatc
aaggcgcacaaggaggcgctggaacgccgccgcatcgacgaggagcgccggctcttctat
gtcgcgctcaccagaaccgaacgcgtactgctggtttcgtcgcatcactgggccgagacc
ggcagttcgccgaaggggccctcggacttcctgctcgagctgaagcacgcgagcgaagcc
gccgacagccccgccaacggtgttgtcgacgtcgcgtgctgggacgaaccgccggagcac
aacgcggtgaacccgttcaccgacaacccggccaccgccgagtggccgcgcgatccgctc
ggcaaccgccgcgacccgatcgaacagggcgccgcactcgtccgggccgcgctcgaggaa
ctgcggctgcggccgcccccgccacgagaaacgccgtcgcgcaaggaatccgagcaggcg
caaccgggggagcagtcggccttgcccctgtccggcacgcttttcgacgatgccgcaccg
gaatacctcgaaccaccggatttcgacgacccgccgccacccgatccgctggacgggttc
gacggtgcgccgccggtctccgacatcccgcccgatccgtacgacgaaccgctctccgcg
gccgatatcgccttcgccgcagccgaattcgatccggagcggccggcggatccggcggac
cccgacggctgggccgccgatgtcgacgctctgctcgccgaattcgaggccgagcagtcc
gcggccgaggaggtcgaactgcccggtcagatcgcggcgaccgcgctggtcgagctgcgc
gccgatccccgcaaactcgcggcgcggctacggcgtccgctgccgttcccgccgagcccg
ctggcccgccgcggtaccgcgttccacgcctgggtgcagcgctggttcggcgcggaccgg
ctgttgggcttggacgagctgcccggcgcgtccgacggcggccccgccgacgacgtggac
aaggaactgaccgcgatgcaggacgcgttcctgaactcctcgtgggccaaccgcagtccg
ctcgaggtggagatcgccttcgaaacctccatcgcgggcaccgtgattcgcggccggatg
gacgcggtgttcgccgaaccgggcggcggctggatcgtggtggactggaagaccggcgcc
gaacccacgtctgcggaggagcctgccgtcgcgatgcagctcgcggtgtatcgcctggcc
tgggccaggttgatggcggcgcgggagggcaggcccgagcaggagatgctgggccggatc
agcgccgcgttccattatgtgcgcaccgggcgcaccatcgcgcccgctacactcgcgggc
ccggccgagctggccgagctgatcaggactgccgcgccgaccggctcaccttcagcgcct
gcgtga
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