Nitrosococcus watsonii: Nwat_0295
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Entry
Nwat_0295 CDS
T01266
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
nwa
Nitrosococcus watsonii
Pathway
nwa02020
Two-component system
nwa02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nwa00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Nwat_0295
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Nwat_0295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nwa03021
]
Nwat_0295
Transcription machinery [BR:
nwa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Nwat_0295
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
ADJ27265
UniProt:
D8K9H6
LinkDB
All DBs
Position
complement(306741..308189)
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AA seq
482 aa
AA seq
DB search
MKTSLQLRLGQQLTMTPQLQQAIRLLQLSTLELQTEIQQALESNPLLEQNEERQEPLETD
GLKNEVLDPEGSELTASLAQETIPEELPVDTNWNDIYDSSPLPGTSGSESSPDLENQDKG
GETLQEHLLWQAHLATTNEKDFAIAATIIDSINEEGYLCSTFEEIQASLGKDIEVELDEI
KTILHQIQNFEPSGVGARDLAECLLLQLKQYPPTTPWLKEAKLLLSQHLITLGKRDYMQL
MRVMKLSEQELQAVIHLIQSLNPRPGHQIQPSKTEYVVPDIYVTKHKGCWQVELNPDTAP
RLRVNAQYASLIKRADDSLANSYLKNQLQEARWFLKSLHSRNETLLKVTCCIVERQQGFL
EHGEEAMRPLVLHDIAEAVSMHESTVSRVTTNKYMHTPRGIYELKYFFSSHVATSSGGEC
SATAIRALIKKLIAAEKPRQPLSDSKIAQTLAEQGIKVARRTIAKYRENLSIPPSNERKR
LI
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacatctcttcaattacgccttgggcagcaactaacgatgacgccccagttgcag
caagccattcgtttgctgcagctttcaaccttggaactgcaaactgagatccaacaggca
ttagagtctaatccactgcttgagcaaaacgaagagaggcaggagcctttagaaaccgat
ggcttaaagaacgaagttcttgatcctgaaggcagtgagctaacagcttcactggcccaa
gagacaatcccagaggaattacccgtagacactaactggaacgatatctatgacagctca
ccgttgccgggtacctctggaagcgaatcctcacccgatctagaaaatcaggacaagggg
ggagaaaccttgcaagaacacttgctatggcaggcacatttggctaccaccaacgagaaa
gattttgccatcgcagccactattatcgattcgattaatgaagaaggctatctatgcagt
accttcgaagaaatacaagcaagcctaggaaaggacatagaggtcgagcttgatgaaatc
aaaaccatattgcaccagatacagaatttcgagccttctggggttggcgcacgtgactta
gctgagtgtctgttgctacaactgaaacagtatcctcccactaccccttggctaaaagaa
gccaaactgctcctatcccaacatctcataacactggggaaacgggactatatgcaattg
atgcgggtgatgaaattatcggaacaagaactacaagcagttatccatttaattcaatcg
ctcaatccgcggccgggtcatcaaatacagccgagtaaaaccgaatacgtcgtacctgat
atctatgtcactaaacacaaaggctgttggcaagtcgaacttaatcccgataccgccccg
cgcttacgggtcaatgctcaatatgctagtcttattaaacgggctgacgatagtctcgct
aacagctatctcaaaaaccaactccaagaagcccgctggtttcttaaaagcctgcacagc
cgcaatgaaaccttacttaaagtcacctgttgtattgttgagcggcagcagggttttttg
gagcacggtgaagaagccatgcgtcctttagtgttacacgatattgcggaagcggtctcc
atgcatgaatctacggtttctcgggtcaccaccaacaaatacatgcatactccacgggga
atttatgagctaaaatactttttttccagccatgtggctaccagcagtgggggagagtgc
tccgcaacggctatccgtgctcttatcaagaaattaatcgctgcggaaaaacctcgccaa
cctctaagcgatagtaaaatcgcccaaaccctggccgaacaaggcatcaaagtggcacgg
cgtactattgccaaatatcgggaaaacctaagcatacccccttccaacgagcgaaaacgc
ttgatctag
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