Nitrosococcus watsonii: Nwat_0537
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Entry
Nwat_0537 CDS
T01266
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
nwa
Nitrosococcus watsonii
Pathway
nwa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nwa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Nwat_0537
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nwa03019
]
Nwat_0537
Enzymes [BR:
nwa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Nwat_0537
Messenger RNA biogenesis [BR:
nwa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Nwat_0537
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADJ27500
UniProt:
D8KAW6
LinkDB
All DBs
Position
555972..557267
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AA seq
431 aa
AA seq
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MTDPGFSEISFDSLNLAEALIQGIQKAGFVICTPIQALALPLLLAGEDVAGQAQTGTGKT
AAFLLATMQRLLREPSVGVSQQPRGLIVVPTRELAIQVSKDAQLLGQHTDLRCVVVYGGT
NYRKQRHLLEQGCDILIGTPGRLIDYYQQGIIGFKKIQTVVLDEADRMFDLGFIRDIRYI
LRRLPPPDKRLGMLFSATLSLRVMELAYEYMNNPRLLRIEPQKVTVDKITERIYFPANEE
KISLLLALLKRLAPRHAIVFANTKHGAEQVWGYLEGNGFKAALLSSDVPQGKRQRLLTAF
QDGIYPILVATDVAARGLHVSTVTHVFNYDLPQDPEDYVHRIGRTARAGASGSAVSFACE
DYAFSLPDIEEYIGHKVVPFSVEEEELLVPKQRVFLSYKDKKKSRKEASYSGQKKRTFRK
KETPSGGKNRT
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcctggtttttctgaaatttcatttgacagcttaaatttggcggaggcattg
atacaagggattcaaaaggcgggttttgtcatttgtacgccgattcaagctttagcgttg
ccattgttgctagccggagaggatgtggcggggcaagcccaaacaggtaccggtaaaaca
gctgccttcctgctagcgacaatgcaacgtttattgagggagcctagcgtcggagtgagt
cagcagcctcgagggctaatcgtagttccaactcgtgaactagctattcaggtaagcaag
gatgctcagcttcttgggcagcataccgatttgcgatgtgttgtcgtttatggcggcact
aattaccgtaaacagcgccatctcctggagcagggctgtgacattctgattggtacgcca
ggacgacttattgattattatcaacagggaataatcggttttaaaaaaattcagacagtg
gttttagacgaggccgatcggatgttcgacttgggttttatacgggacattcgttatatc
ttacgccgtctcccaccacccgataagcgtcttggaatgctattctcggccactctttct
ttacgggtgatggaattggcatacgaatatatgaataatccccggttgctgcggatcgag
ccgcagaaggtaaccgtcgataaaatcacggaaagaatttattttcccgctaacgaagaa
aaaatttccctgctgcttgcccttctcaaacgcttggcgcctcgacatgcgattgtattc
gccaatactaaacatggtgcagaacaagtatggggttacctggaaggtaacggttttaaa
gctgctctgctttctagcgatgttcctcagggtaaacgtcaacgtctactcacggcgttc
caagatggaatctatcctattctagtcgccacggatgttgcggcgcgaggtcttcatgtc
tctacagtgacccatgtctttaattatgatttaccccaagatccagaagactacgtgcat
cgcataggccgaaccgctcgggctggagctagcggttcggcagtgagttttgcttgcgag
gattatgccttttccctgcctgatatcgaggaatatattggtcataaagtcgttcctttc
tcagtggaggaggaggaattgctagtgcctaaacaacgggtatttttatcttataaagat
aagaaaaagtcgcgcaaggaggcgtcttactctggtcaaaaaaagagaacttttcggaag
aaggagacaccttcaggtggcaaaaatcgtacgtag
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