Nitrosococcus watsonii: Nwat_1815
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Entry
Nwat_1815 CDS
T01266
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nwa
Nitrosococcus watsonii
Brite
KEGG Orthology (KO) [BR:
nwa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nwa03016
]
Nwat_1815
Enzymes [BR:
nwa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Nwat_1815
Transfer RNA biogenesis [BR:
nwa03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Nwat_1815
Prokaryotic type
tRNA splicing ligases
Nwat_1815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADJ28670
UniProt:
D8K6Z3
LinkDB
All DBs
Position
2004195..2005385
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AA seq
396 aa
AA seq
DB search
MKHEDIISTNGKAIIETESLPIKLWLEKDQVEEGALEQARNLANLPFAFKHIAIMPDTHQ
GYGMPIGAILATKGAIIPNAVGVDIGCGMCSLRTNLKHIETPKLKEIMGIIRKTVPVGFE
HHKTRQDETWMPERKGELPIVEQEYESALYQIGTLGGGNHFIEIQKGSDGYIWIMIHSGS
RNIGFTVANHYDGVAKKMNQDAGEDVSQELAYIPETSAYFQLYWNEMNYCLEFALANRKL
MMERAKLAFTEILPEVEFADFINKPHNFAAEEKHFGEWVIVHRKGATRARKGEWGMIPGS
QGTRSFLVKGKGEAQSFESCAHGAGRIMSRTKARKTLDLKEEVKSLKDRGILHAIRHRKD
LDEAPGSYKDIDEVMANQVDLVDVQIELQPLAVIKG
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgaaacacgaagatatcatatccaccaatggaaaagcgatcattgaaacagagagcttg
cccataaaattatggttggaaaaggatcaggtggaagagggagcactggagcaggcgcga
aaccttgcaaatcttccatttgccttcaagcacattgctatcatgcctgatacccatcaa
ggctacggcatgcccatcggtgctatattggccaccaagggggccattatacccaatgct
gtcggtgtggatattgggtgcggcatgtgttccttgcgaaccaatctcaagcatatcgaa
acgccaaagctgaaagagatcatgggtatcatccgcaagactgttcccgtgggctttgag
caccacaaaacgcgtcaagacgaaacatggatgcctgaaagaaagggggaattacccatt
gttgagcaagagtatgaaagcgctctttatcagatcggtaccttgggcgggggcaatcat
ttcatcgaaatacaaaagggatcagatggctatatctggattatgattcactccggctcc
cgcaacatcggttttacggtggccaaccattacgatggcgtggcgaaaaagatgaaccag
gacgccggcgaggacgtgtctcaggaactggcatatattcccgaaacgtctgcatatttc
caactgtattggaacgaaatgaactattgcctcgaatttgcgctggccaacagaaaactg
atgatggaacgggccaagttagcgtttaccgagattctacccgaggtcgagttcgcggat
tttatcaataaacctcacaacttcgcggccgaggaaaaacattttggagagtgggttatc
gttcatagaaaaggcgcgacccgagcccgaaaaggagaatggggaatgatccccggctcc
cagggcacacggtcttttctcgtgaaagggaaaggagaagcccagtctttcgaatcatgc
gcgcacggtgccggaagaatcatgagccgaacaaaggcacgcaaaacgctagatctgaag
gaagaggtaaagtcattgaaagaccgaggaatactgcacgctatccgccaccgcaaggat
ctggatgaagcgccgggatcttacaaggacatcgatgaggtgatggcaaaccaggtcgat
ctggtcgacgtgcaaatcgagctgcaaccactggctgtcatcaagggttaa
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