Nitrosococcus watsonii: Nwat_2164
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Entry
Nwat_2164 CDS
T01266
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nwa
Nitrosococcus watsonii
Pathway
nwa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nwa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Nwat_2164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nwa03021
]
Nwat_2164
03400 DNA repair and recombination proteins [BR:
nwa03400
]
Nwat_2164
Enzymes [BR:
nwa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Nwat_2164
Transcription machinery [BR:
nwa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Nwat_2164
DNA repair and recombination proteins [BR:
nwa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Nwat_2164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ADJ28996
UniProt:
D8K7W9
LinkDB
All DBs
Position
complement(2351379..2355590)
Genome browser
AA seq
1403 aa
AA seq
DB search
MRDLLNLLKQQNQMEEFDSIRIGLASPDMIRAWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRISLLLDMTLRDIERVLYFEASVVIDPGMTSLERGQLLADEAYLQAIEEYGDEFDARM
GAEAVQKMLKTLDLKGEATRLREEITGTNSDTKIKKFSKRLKLIEAFIDSGNRSEWMILE
VLPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKLPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKKMALELFKPFIFGKLERAGLATTIKAAKKLVEREGPEVWDVLEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCVAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPTQDVVLGLYYMTCERVNAKGEGMLFADIDEVRRAYETN
TADLHAKIAVRITDIDLSKSEGKGETTRLVKTTVGRALLSELLPPGLPFELANKNMTKKE
ISKLVNICYRRLGLKTSVVFADRLMYLGFRQATLSGISIGVNDMVVPKEKQAILTDAEEE
VKEIEDQYASGLVTNGERYNKVVDIWSHTNDQVAKAMMERLGSEEVRDAKGNVVKQQTFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLDVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTKDDCGTTRGINMTPFVEGGDIVEPLRERVL
GRVLALNVYVPGSNEVAIPAGTLLDESWVDYLETLGIDAVKVRSPITCETRYGICAACYG
RDLGRGHRINIGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAVTTDRIEVKYRGNIRL
HNVKIVQHDSGKYVAVSRSGEVHVVDEQGRERERYKIPYGAELSAGDGDTVESGQVIATW
APHTHPVITEVAGKVRLQDFLEGTTVERQADEVTGLTSLTVLDPKQRGAAVKELRPMVKL
IDEAGSDLCLAGTDIPAHYYLPAGAIVSVEDGAMVGVGDVLARLPQESSKTRDITGGLPR
VADLFEARKPKDPAVLAEISGTVSFGKETKGKQRLIITGSDSERHEELIPKWRQVNVFEG
EHVEKGEAIVDGPPVPHDILRLRGVEELTYYIVNEVQEVYRLQGVKINDKHIEVIICQML
RKVEIIEPGDTNFLKGEQIDKSRLLEENEKMEKEGKLPARFEPVLLGITKASLATESFIS
AASFQETTRVLTEAAVTGKCDELRGLKENVIVGRLIPAGTGLAYHSERRRKRRLLEQPES
LTADTGASHYGEDEISESGAATA
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgagagatttgctgaatttgctcaagcagcaaaaccagatggaggagttcgattccata
cgcattggcctggcgtctcccgatatgatccgggcttggtcatacggcgaagtcaagaag
cctgaaaccattaattatcgaacttttaagccagagcgggatggattgttttgcgctaag
atttttggcccagtcaaagactatgagtgcttatgtggtaaatataagcgtctcaaacat
cgtggcgtgatttgtgagaaatgcggggtagaggtgacactagcgaaagttcgccgggag
cgcatgggtcatattgagttggcgagtccggtagctcatatttggtttttaaaatcgctg
ccttcgcggattagtctactgttagatatgacgctccgggacattgagcgggtactctac
tttgaggcatctgtggttattgatccgggtatgacttcgttagagcgggggcaactccta
gcagacgaggcttatcttcaagccattgaggaatatggtgacgaatttgatgctcgtatg
ggagcagaagccgttcagaaaatgttaaaaacccttgatcttaagggagaggcgaccagg
ctgcgtgaggagattacaggcaccaactctgacaccaaaatcaaaaaatttagcaagcgg
cttaagcttatcgaggctttcattgactcaggtaatcgttctgagtggatgattttggaa
gtcctccccgtattaccaccggatttacggcctttagtgccgttggaaggggggcgtttt
gctacttccgatcttaacgatctgtaccggcgggtgattaatcgtaataatcgtctcaag
cggctgttagatttgaatgcgcctgatattatcgtgcgcaatgaaaagcgtatgctccaa
gagtccgtggatgcccttttggataacggacgtcgtgggcgggcgatcacaggcaccaat
aagttacctttaaagtcgctggccgatatgattaaaggtaagcagggccggtttcggcaa
aacttgctggggaaacgggtggattattcaggccgctcggtgattgtggtgggtccgact
ctgaagctacaccagtgtggtttgcccaaaaagatggcgctggagctttttaagcctttt
atctttggtaagcttgagcgggctgggcttgctaccacgattaaagcggcgaaaaaatta
gtggaacgggaaggcccagaggtatgggacgtgttagaagaggtgatccgtgagcatccg
gtgatgcttaaccgtgcccccaccttgcatcgtcttggcatccaagcctttgagccggtg
cttattgaaggtaaggcaattcaactccaccccttagtgtgcgtagcctttaatgctgac
tttgacggtgaccagatggcggttcatgtgccgctatccttggaggctcagttggaagcc
cgtgcgctaatgatgtctaccaacaatattttgtccccagctaatggagagcccattatt
gtccctacccaggatgttgtattagggctttattatatgacctgcgagcgggtgaatgct
aagggtgaaggaatgctctttgccgatatcgatgaggtacggcgcgcctatgagacaaat
acggctgatctccatgcaaaaatcgcagtgcgcattaccgacatagatctctcaaagtct
gaaggtaaaggcgagacgacccgccttgttaagaccacagtggggcgggccttgctctcg
gaacttttgcccccagggctgccttttgagttagctaataagaatatgaccaagaaagaa
atttctaagttggttaatatttgctaccggcgccttggccttaagacttcggtggtgttt
gctgatcggctgatgtaccttggattccgacaggcgactcttagcggtatttccattggt
gttaatgacatggtggtgccaaaggaaaagcaagcgatccttaccgacgcggaagaagag
gttaaggaaatagaggaccagtatgcttcgggcttggtgactaatggcgagcgctacaat
aaagtcgtggatatttggtcccatactaatgatcaagttgctaaggcgatgatggaacgt
ctaggaagcgaggaggtacgcgatgcaaaaggtaatgtcgtcaagcaacagactttcaat
tctatctatatgatggctgattccggtgctcgtggatcggccgcccaaattcgccaactt
gccggtatgcgtggcttgatggctaaaccggacggttcaattattgaaacgccgattacc
gctaattttcgtgaaggattggatgtcctgcagtatttcatctctacccatggagcccgc
aagggtctggcggacacagcgttaaaaaccgctaattcagggtatttgactcggcgctta
gtggatgtggctcaagatttagtcgttacaaaggatgattgcggcaccacacgtggaatt
aatatgaccccttttgtagagggcggcgatattgtggagccgttacgagagcgtgttcta
gggcgagtactggcgcttaatgtttatgtgccaggaagtaatgaagtcgctatacctgct
ggtacgttactggatgaatcctgggttgattaccttgagacgctaggtattgatgcagtg
aaggtgcgttcacctattacctgcgagactcggtatggaatctgtgctgcttgctatggt
cgggatttgggacgaggtcaccgtatcaatatcggtgaagctattggtgttattgcagcg
caatctatcggtgagccaggcacgcagcttactatgcgcactttccatattggaggggca
gcctctcgagcagtgacgaccgacaggattgaggttaagtatagaggcaacattcggttg
cataatgttaagattgttcaacatgatagcggtaagtatgttgctgtctcccgctccggt
gaagtccatgtggtcgatgaacaggggcgtgagcgggaacgttataagattccttatggt
gccgagctttcagcaggggatggtgatacagtggaatcgggtcaagtcattgctacttgg
gctcctcatactcatccagtcatcaccgaggtcgcgggtaaggtcagacttcaggatttt
ctggaaggtactactgtggaacgtcaggctgatgaagtgaccggcttgaccagccttacg
gtgcttgatcccaagcagcggggtgctgctgttaaagaattacgcccaatggttaaattg
attgatgaagcggggagtgatctgtgccttgcagggacggatattccagctcattattat
ttgccagcaggagcgattgtttctgtagaagatggtgctatggttggtgtgggtgatgta
ttggcgcgattgccccaagaatctagtaagacccgcgatattacgggtggtttgccgaga
gtagcagaccttttcgaagcccgaaaaccaaaggatccagcggtgcttgccgagatctca
gggacggtaagctttggtaaggaaactaaaggaaagcagcggctcatcattactggcagt
gatagcgagcggcatgaggaattgattcctaagtggcgtcaagtgaatgtgtttgaaggc
gagcatgttgaaaaaggcgaagcgatcgtcgatggaccacctgtaccgcatgatatttta
cgcctaagaggtgtggaggagttaacttattatattgttaacgaagttcaggaggtatat
cgcctgcaaggggtaaaaatcaatgataagcacattgaagtcattatctgccaaatgctt
cgcaaagtggaaataatagaacctggagatactaattttctcaagggcgagcagatcgat
aagtcaagattgctggaagaaaatgaaaaaatggagaaggaaggtaaattacctgctcgt
tttgagccggtgctcctgggtattaccaaggcttctttagccacggaatctttcatttcg
gctgcctctttccaagagactacacgggtgcttacggaggcagcggtgacaggcaaatgc
gatgagttgcgggggttaaaagaaaatgtgattgtgggccgtttaattcccgcagggaca
ggtttagcctatcattctgaacggcgtcgcaagcggcggttgctggagcagccagaatcc
ttgacggctgatacaggcgcttcccattatggtgaagatgagatttctgagtcaggcgct
gctaccgcttga
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integrated database retrieval system
