Neisseria wadsworthii: H3L96_01425
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Entry
H3L96_01425 CDS
T07067
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nwd
Neisseria wadsworthii
Pathway
nwd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nwd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H3L96_01425 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nwd03021
]
H3L96_01425 (rpoC)
03400 DNA repair and recombination proteins [BR:
nwd03400
]
H3L96_01425 (rpoC)
Enzymes [BR:
nwd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H3L96_01425 (rpoC)
Transcription machinery [BR:
nwd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H3L96_01425 (rpoC)
DNA repair and recombination proteins [BR:
nwd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H3L96_01425 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Peptidase_M23
DUF5979
Motif
Other DBs
NCBI-ProteinID:
QMT35950
LinkDB
All DBs
Position
complement(279269..283447)
Genome browser
AA seq
1392 aa
AA seq
DB search
MKALLDLFNPLQSAGMEEEFDAIKIGIASPETIRSWSYGEVKKPETINYRTFKPERDGLF
CAKIFGPVKDYECLCGKYKRLKFKGVTCEKCGVEVTLSKVRRERMGHIELAAPIAHIWFL
KSLPSRLGMVLDMTLRDIERVLYFEAFVVTDPGMTPLQRRQLLTEEDYYSKLEEYGDDFD
AKMGAEGIRDLLRNLDIASEIELLRQELESTGSDTKIKKIAKRLKVLEAFQRSGMKLEWM
IMDVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELHAPDIIVRNEKR
MLQEAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITV
GPYLRLHQCGLPKKMALELFKPFIFHKLELQGLASTVKAAKKLVEQEVPEVWDILEEVIR
EHPIMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQ
MEARTLMLASNNVLSPANGEPIIVPSQDIVLGLYYMTRDKINGKGEGSLFADVKEVHRAY
HTKQVELGTKITVRVREWVKNEEGEFEPVVNRYETTVGRALLSEILPKGLPFDYVNKALK
KKEISKLINASFRLCGLRDTVIFADHLMYTGFALAAKGGISICVDDMEVPEQKATLLAEA
QSEVKEIENQYRQGLVTNGERYNKVVDIWGRTGDKIAKAMMDNLSTQKVTDREGNKVDQE
SFNSIYMMADSGARGSAAQIKQLSGMRGLMAKPDGSIIETPITANFREGLTVLQYFISTH
GARKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSDGFIMKAVVQGGDVIEPLRD
RILGRVTAADVVDPSSGETLVEAGTLLSEQLVDLIDNSGVDEVKVRTPITCKTRYGLCAK
CYGRDLARGKLVNAGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAASQVEAKSNGT
ARFNSQMRYVMNNKGELIVIGRSSEVVIHDEIGRERERHKVPYGATLLVNDGSGVKAGQT
LATWDPHTRPMITEHAGRVKFENIEEGVTVTKQTDEITGLSTLVVIDGKRRASSASKLLR
PTVKLLDENGEEVKIPGTETSVSMAFPVGAIITVREDQEVGKGDVLARIPQASSKTRDIT
GGLPRVAELFEARVPKDAGMLAEVTGTVSFGKETKGKQRLIITDLDGVAYETLISKEKQI
LVHDGQVVNRGETIVDGAVDPHDILRLQGVEALARYIVQEVQEVYRLQGVKISDKHIEVI
IRQMLRRVNIADAGETGFIPGEQVERADVMQANEKAIAEGKEPARFDNILLGITKASLST
DSFISAASFQETTRVLTEAAIMGKHDELRGLKENVIVGRLIPAGTGLTYHRTRRNEWAEA
NEVEQTGEEISE
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctttgttagacctgtttaaccccctgcaatcagcaggtatggaagaagaattt
gatgcgattaaaatcggcattgcttctccggaaaccattcgctcatggtcttacggtgaa
gttaagaagccggagaccatcaactaccgtactttcaagcctgagcgtgacggcttgttc
tgcgctaagattttcggtccggttaaagattatgaatgtttgtgtggtaaatacaaacgt
ttgaaatttaaaggtgtaacctgtgaaaaatgtggcgtggaagtaactttgtccaaagta
cgccgtgagcgtatgggccacattgaattggctgcaccaattgcacatatatggtttttg
aaatcattaccttcccgcttgggtatggtattggatatgactttacgcgatattgagcgc
gtgttgtattttgaagcttttgtagtgaccgatcctggcatgactccgttgcaacgccgc
caattgctgactgaagaagattattacagcaaattggaagaatatggcgatgattttgat
gcaaaaatgggtgccgagggtattcgtgatttgttgcgtaatctagatattgcatcagaa
atcgaattattgcgccaagagttggaatccaccggttctgacacaaaaatcaagaaaatt
gccaagcgtttgaaagtattggaggcttttcagcgttcaggcatgaagcttgaatggatg
attatggatgtactgccagtgttgccaccggatttgcgtccgttggttccgcttgacggt
ggtcgctttgctacttctgatttgaatgatttgtatcgtcgggttatcaaccgtaataac
cgtttgaagcgtctgctggagttgcatgcaccagacattatcgtgcgtaatgaaaaacgc
atgttgcaagaagctgtggattcattgttggataacggtcgccgcggtaaagcaatgacc
ggtgcaaacaagcgtccgttgaaatctttggctgatatgattaaaggtaaaggcggtcgt
ttccgtcaaaacctgttaggcaaacgtgttgactattcaggccgttctgtaattaccgta
ggcccgtacctgcgtctacatcaatgcggtttaccgaaaaaaatggccttggagttgttt
aagcctttcatctttcataaattggaattgcaaggtttggcttcaaccgtaaaagctgcg
aaaaagctggtagagcaggaagtgccggaagtgtgggatatcttggaagaagtgattcga
gagcatccgattatgcttaaccgtgcaccgactttgcaccgtttgggtattcaagcattt
gagccgattttaattgaaggcaaagccattcagttgcacccgctcgtttgtgcggcattc
aacgccgacttcgacggtgaccaaatggctgttcacgttccattgagtttggaagcacaa
atggaagcacgtaccttgatgctggcttccaacaacgtattgtcgcctgccaacggcgag
ccgattatcgttccttcacaagatattgtattgggcttgtattatatgacccgagacaaa
atcaacggtaaaggtgaaggcagcctgtttgccgatgtgaaagaagtacaccgtgcttac
catactaaacaagtagaactcggcacaaaaattactgtgcgcgtacgcgagtgggtgaaa
aatgaagaaggtgaattcgagccggtggttaaccgttacgaaactaccgtcggtcgtgcg
ttgttgagcgaaattctgcctaaaggcctaccgtttgactatgtgaataaagcattgaag
aagaaagaaatttctaagttgattaatgcatcattccgtttgtgcggtttgcgtgatact
gtaatttttgccgaccatttgatgtacaccggttttgcattggcggctaaagggggcatt
tcgatttgcgtggacgatatggaagtgccagagcaaaaagcaaccttgctggccgaagct
caaagcgaagtgaaggaaatcgaaaatcaataccgtcaaggtttggtaacgaatggtgaa
cggtataacaaagtagtggatatctggggtcgcaccggcgataaaatcgctaaagcgatg
atggataatctttctactcaaaaagtaactgaccgtgaaggtaataaagtcgatcaagag
tcgtttaactctatttatatgatggctgactcaggtgcccgtggttcggcagctcagatt
aagcagctttccggtatgcgtggtttgatggccaaacctgatggttcgattatcgaaacc
ccgattaccgcaaacttccgagaaggtttgaccgtattgcaatactttatttccacacac
ggtgcgcgtaaaggtttggcggatacggcattgaaaactgcaaactcaggttatctgacc
cgtcgtttggtggatgtcacccaagatttggtagtgattgaagacgattgcggaacctct
gacggatttattatgaaagccgttgttcaaggcggtgatgtgattgaaccgttgcgtgac
cgtattttgggtcgtgtaactgctgctgatgtggttgacccttccagtggagagaccctg
gttgaagctggtacgctgctgagcgagcaactggttgacttgattgataactcgggtgtg
gatgaagtaaaagtacgcacgccgattacttgtaaaacccgctatggtttgtgtgccaaa
tgttatggccgggacttggcgcgcggtaaactggttaatgccggtgaagctgttggcgta
atcgctgcacaatcaatcggtgaaccgggtactcagttgacaatgcgtactttccacatt
ggtggcgcggcatcccgagccgcagcggccagccaagttgaagccaaatccaacggtacg
gcacgctttaacagccaaatgcgttatgtgatgaataataaaggtgagctgattgtgatt
ggccgctcttccgaggtggtgattcatgatgaaatcggccgcgaacgcgagcgccataaa
gtaccttacggtgccactttattggtaaatgacggctcaggcgtgaaagccggccaaact
ttggccacttgggatccacatacgcgcccaatgattaccgaacacgccggtcgtgtgaag
tttgaaaacatcgaagaaggtgtaaccgttaccaagcaaaccgatgaaattaccggttta
tcgaccttggtggtaattgatggcaagcgccgtgcatcaagcgcttccaaattgttgcgc
ccgacagtaaaactattggacgaaaatggtgaggaagtaaaaattccgggtacggaaacg
tctgtatctatggcattcccagtgggtgcgattattaccgtgcgtgaagatcaggaagta
ggtaaaggtgacgtgttagcgcgtatcccacaggcttcttcgaaaacccgtgatattacc
ggtggtctgccgagagtagctgagctgtttgaagcgcgtgtaccaaaagatgccggtatg
ctggccgaagtaacaggtactgtgtcgttcggtaaagaaaccaaaggcaaacagcgtctg
attatcactgacttagacggtgtggcatatgaaacgctgatttctaaagagaaacagatt
ttggtgcacgatggccaagttgtgaaccggggtgaaaccattgtagatggtgccgtagat
ccgcatgatattttgcgtttgcagggagttgaagctttggcgcgttacattgtgcaagag
gtgcaagaagtttaccgcctgcaaggcgtgaagatttcagacaagcatattgaagttatt
atccgccaaatgctgcgccgtgtgaacattgcagatgcaggtgaaaccggctttattcct
ggcgaacaggtagaacgcgctgatgtaatgcaagcaaatgaaaaagcaattgcggaaggc
aaagagccagcacgttttgataacattctgctgggtattaccaaagcgtcattgtcgacc
gatagctttatctctgctgcgtccttccaagaaactacacgcgtattgactgaggcggct
atcatgggtaaacatgacgaattacgcggcctgaaagaaaacgttattgtgggccgtctg
atccctgccggtaccggtttgacataccatcgtacacgtcgtaatgaatgggctgaagcc
aatgaggttgaacagaccggtgaagagatatcagaataa
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