Neisseria wadsworthii: H3L96_10675
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Entry
H3L96_10675 CDS
T07067
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nwd
Neisseria wadsworthii
Pathway
nwd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nwd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H3L96_10675 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nwd03400
]
H3L96_10675 (mfd)
Enzymes [BR:
nwd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H3L96_10675 (mfd)
DNA repair and recombination proteins [BR:
nwd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H3L96_10675 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
AAA_30
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QMT35483
LinkDB
All DBs
Position
2242671..2246309
Genome browser
AA seq
1212 aa
AA seq
DB search
MNYPIPAPAQKSRWLDLSRGSLPFFLARCLPEKPVKIILTQDVEQALRLQTAWQFFRPQD
KAVFLPDWETLPYERFSPHHDLVSERLAALWQIKQGAADAVFVPVATAMQKLAPVSFLMG
RTFWLKTGQTLDIAALRENLVEAGYSHVSNVIAAGEFALRGGILDIFPSGSDAPYRLDMF
GDEIDSIKTFDPDTQRTIAPVSEIRLLPAHEFPTDDDAQKIFRSRFREEIESDYNAATVY
KAVSSGHFGAGVEYYLPLFFENELATLFDYIGEEALVVCIGDVHAEASRFWSDVKSRFAM
AKGDETYPPLHPQHLYLSEDQFAGRLKPYGQILPDFHGKQHALPDVAVNRQSETPLAALQ
SFQTAFNGKVLLCAESSGRRETMLGFMQQHGLKAHSVDGWQAFLDSDAPLCITVTQLAYG
FQLPSENADRVPESTQTVGRILESDETEADLMSDTSIRPTEAHLSDGLSGSLSKNVGQTQ
EPDEVGRILESDKTQSAQMSDKNIRPTTGLAVITESDLYQYVARSRTSRRKKHAQVSDGL
LRDLAEINIGDPVVHEEHGIGRYMGLVNMDLGDGDNEMMLLEYAGEAQLYVPVSNLHLIS
RYSGHAHENVQLHKLGTAAWSKAKRKAAEKARDTAAELLNLYAQRAAQEGFKFQFNELDY
QAFSDGFGYEETEDQAAAIAAVLQDLTQGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK
QVAVLAPTTLLVEQHAQNFSDRFADFPVKVAQLSRFNSSKETKATLAGMADGTVDIVIGT
HKLVQDDIQFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTLTATPIPRTLSMALEGL
RDFSLITTAPSRRLAVKTFVKPFSEASVREAVLRELKRGGQVFFLHNEVETIENMRERLE
TLLPEARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADK
FGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAISSADELGAGFTLAMQDLEI
RGAGEILGEGQSGEMMQVGFTLYTEMLKQAVRDLKKGRQPDLDAPLGVTTEIKLHSPALL
PESYCPDIHERLVLYKRLATCETEAQINSVHEELVDRFGLPEQPVKTLIESHRIRLIAKE
MGIDAIDATSDAVTLTFGKHHNIDPAQIILLMQSNKNYRMTGADKLRVSAVMEDVATRIQ
TVNAVLKKLGGR
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgaactaccccattcccgcccccgcccaaaaatcccgctggctcgacctttcccgcggc
agcctgccgtttttccttgcccgatgcctgcctgaaaagcccgttaaaatcatcctcacg
caagatgttgagcaggccctgcgcctgcaaaccgcgtggcagtttttccgcccgcaggat
aaggccgtgtttctgcccgactgggaaacgctgccctacgagcgtttttcgccgcatcac
gatttggtgtcggaacggctggctgcgttgtggcagattaagcagggcgcagcggatgcg
gtgttcgtgccggtggccaccgctatgcagaagctcgcgccggtgtcgtttttgatgggg
cgcacgttttggctgaaaaccggccagactttggatatagccgcgctgcgggaaaacttg
gtggaagccggttacagccatgtttccaacgtgattgccgccggcgaattcgccttgcgc
ggcggcattttggatattttccccagcggcagcgacgcgccctaccgcttggatatgttc
ggcgacgaaatcgacagcatcaaaaccttcgaccccgacacccagcgcaccatcgcgccc
gtttccgaaatccgcctgctgcctgcgcacgagttcccgaccgacgacgacgcgcaaaaa
atcttccgcagccgtttccgcgaagaaatcgaaagcgactacaacgccgccaccgtttat
aaagccgtgagcagcggccatttcggcgcgggcgtggaatattatctgccgctgtttttt
gaaaacgagctggccacgctgttcgactacatcggcgaagaggcgctggtggtgtgcatc
ggcgacgtgcacgccgaggcttcgcgcttttggtcggatgtcaaatcgcgctttgcgatg
gctaaaggcgatgaaacttacccgcctttgcatccacagcatttgtatctcagcgaagac
cagtttgcaggccgtctgaaaccttacggccaaatcctgcccgacttccacggcaaacaa
cacgcgttgcccgatgtggccgtgaaccgccaatccgaaaccccgctcgccgcgctgcaa
agttttcagacggcctttaacggcaaagtgttgctgtgcgccgaaagctcaggccgccgc
gaaaccatgctcggctttatgcagcaacacggcttaaaagcgcacagtgtggacggctgg
caggcgtttttagacagcgacgcacctttgtgcattaccgtaacgcagttggcttatggg
tttcagttgccgtctgaaaacgccgaccgtgttcctgaatcgactcaaaccgtaggtcgg
attctcgaatccgacgaaacagaagctgatttgatgtcggatacaagtatccgacctacg
gaagctcatctttcagacggcctttcaggtagcctgtctaaaaatgttggtcagacgcag
gaaccggacgaagtaggtcggattctcgaatccgataaaacacaatcagcgcaaatgtcg
gataaaaatatccgacctacaaccggcctcgccgttatcaccgaatccgacctctaccaa
tacgtcgcccgcagccgcacctcgcgccgcaaaaagcacgcccaagtttcagacggcctc
ttgcgcgacttggccgaaatcaatatcggcgaccccgtggtacacgaagaacacggcata
ggccgctatatgggcttggtcaacatggatttgggcgacggcgacaacgaaatgatgttg
ctcgaatacgcaggcgaagcgcagctttacgtgcccgtgtccaaccttcacctcatcagc
cgctattccggccatgcccacgaaaacgtgcaactgcacaaactcggcaccgccgcatgg
agcaaagccaaacgcaaagccgccgaaaaagcgcgcgacaccgccgccgaactgctcaac
ctctacgcccaacgcgccgcacaagaaggctttaaattccaattcaacgagttggactac
caagccttttcagacggcttcggctacgaagaaaccgaagaccaagccgccgccatcgcc
gccgtgctccaagacctcacccaaggcaagccgatggacaggctcgtgtgcggcgatgtc
ggcttcggcaaaaccgaagtcgccctgcgcgccgccttcgtggccgtgatgggcggcaaa
caagtggccgtgctcgcccccaccacgctgttggtcgaacaacacgcacaaaatttcagt
gaccgcttcgccgattttcccgttaaagtcgcccagctttcccgcttcaacagcagcaaa
gaaaccaaagccacgctcgccggcatggccgacggcacggtcgatatcgtgatcggcacg
cacaaactcgtgcaagacgacatccaattcaaaaacttaggcttggtgattatcgacgaa
gaacaccgcttcggcgtgcgccaaaaagagcagctcaaacgcctgcgcgccaacgtcgac
atcctcaccctcaccgccacccccattccgcgcaccctcagcatggcgctcgaaggcttg
cgcgatttctcgctcatcaccaccgcccccagccgccgcctcgccgtcaaaaccttcgtc
aaacccttcagcgaagccagcgtgcgcgaagccgtgttacgcgaactcaaacgcggcggg
caagtattctttttacacaacgaagtcgaaaccatcgaaaacatgcgcgaacgcctcgaa
accctgctgcccgaagcccgcatcggcgtagcgcacggccaattgcgcgagcgcgaactc
gaacaagtgatgcgcgacttcttgcaacaacgctttaacgtgctgctctgctccaccatc
atcgaaaccggcatcgacatccccaacgccaacaccatcatcatcaaccgcgccgacaaa
ttcggcctcgcccaactgcaccaactacgcgggcgcgtcggccgcagccaccaccaagcc
tacgcctacctgctcacgcccgaatacatcaccaaagatgccgaaaaacgcctcgatgcc
atctcctccgccgacgaactcggcgcaggcttcacgctggccatgcaggatttggaaatc
cgcggcgcaggcgaaatcctcggcgaagggcaaagcggcgaaatgatgcaggtcggcttc
accctctacaccgaaatgctcaaacaagccgtgcgcgacctcaaaaaaggccgccaaccc
gacctcgacgcaccgctgggcgtaaccaccgaaatcaaactgcacagccccgcgctcttg
cccgaaagctactgccccgacatccacgagcggctagtgctctacaaacgcctcgctacc
tgcgaaaccgaagcccaaatcaacagcgtgcacgaagaactcgtcgaccgcttcggccta
cccgaacaacccgtcaaaaccctgatcgaaagccaccgcatccgcctgattgccaaagaa
atgggcatagacgcgattgatgccaccagcgacgccgttaccctcaccttcggcaaacac
cacaacatcgaccctgcgcaaattatcctgctgatgcaaagcaacaaaaactaccgaatg
accggcgcggacaaattacgcgtaagcgcagtgatggaagatgtggcaacgaggattcaa
acggtgaatgcggttttgaagaagttggggggaagataa
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