Nematolebias whitei (Rio pearlfish): 119407514
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Entry
119407514 CDS
T08042
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03030
DNA replication
nwh03410
Base excision repair
nwh03420
Nucleotide excision repair
nwh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
119407514 (rfc1)
03410 Base excision repair
119407514 (rfc1)
03420 Nucleotide excision repair
119407514 (rfc1)
03430 Mismatch repair
119407514 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nwh03032
]
119407514 (rfc1)
03400 DNA repair and recombination proteins [BR:
nwh03400
]
119407514 (rfc1)
DNA replication proteins [BR:
nwh03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
119407514 (rfc1)
DNA repair and recombination proteins [BR:
nwh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
119407514 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
RuvB_N
BRCT_2
Rad17
AAA_33
AAA_5
AAA_30
AAA_17
nSTAND3
RNA_helicase
AAA_16
AAA_14
AAA_7
NTPase_1
AAA_19
AAA_18
Motif
Other DBs
NCBI-GeneID:
119407514
NCBI-ProteinID:
XP_037530266
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All DBs
Position
3:39877494..39923332
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AA seq
1164 aa
AA seq
DB search
MQDIRRFFGPVSGKPAVQKPAPSENTKPKHKKKKSSLSSDEDAEKKKSTKVKISKTEEKR
KTSERKRKKRAVIESDSEEEEEEPVMKSKKSSKQKGTTSKAGLPKKDPVQYVSETDSDGD
NFLSLKKVSKQNGAAKTTKPDPEGSRSGSKDQVKSPFKPSSSQAKAGLKSPPAPKTPKLA
PPPPPKQTPTSVLDYFGVGMIHRSDKKLVASTKRKAPTQDSDDLISDEEMARQLQAEEEL
ELEKQIHEDEEFSRTLAMLDAEPQAKKARKVSVDKPGPSTTPEKSGTAAAGVGGTSSPMK
TRGSRSEVRVSPSPPKKSPIRTSSKLAMMKKKDEVKDEGPRNKTPTKNKVSPKKEPLTSP
VSDLKFTPKVSPKKPEITTSISPDDAEKKKLHSSAYRNFLNREGPRALGSKEIPKGAENC
LEGCTFVLTGVLESMERDDAKSLIERYGGKVTGNISKKTTYLVQGRDGGASKLEKAESLG
TKILDEDGLLDLIRTKPGKKSKYEVAAEAESNASETRTPRSHTSKNTPKAQKISPSKGNS
RSPHTPSPSKTGQPQGHSSGTGDGSTPPGRGSGQTARRELGLPPSPAPETVPPSPAGESL
LWVDKYRPRSLKAVIGQQGEQSCANKLLRWLQNWSKNQNSTKPAAARFGKFGGGKDDGSG
FKAALLSGPPGIGKTTTAALVCEELGFSYVEMNASCTRSKNSLKEVVAESLNNTSIEDFY
KGTSQTVSSKHVMIMDEVDGMAGNEDRGGVQELIALIKTTKIPIICMCNDRNHPKIRSLA
NYCFDLRFQRPRVEQIKGAMMSIAYKEGIKIPPPALNEIILASNQDVRQVIHNLSMWSAK
DKVMTYDQCKSDAASARKDMKLGPFDVCRKVFASGEGNAHMSLIDKSDLFFHDYSLAPLF
VQENYVHVRPAAARGDVKSHLVLLSKTADSICDGDLVDRQIRSRQNWSLLPTQAIYASVI
PGELMRGYMAQFPVFPSWLGKNSSTNKHARIVQELASHMSLKTMGSRQAVNLDYLHYLRL
MLLQPLQKHGAEGAAQAVQLLDDYQLVREDVDSLMEVSSWGGQPDPYSKLDPKVKAAFTR
AYNREVHLTPYSLQVVKKGRRGAGGDLGGEDVDPDGNGSEDDGEDLQTDAMIKQKKAKTT
KESKKEKKEDSSKGKGKGKGKAKK
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgcaggacatcaggcggttctttggaccggtatcgggtaagcctgcggtgcagaaacca
gctccaagtgaaaacaccaaaccaaagcacaagaagaaaaagagttctctgtcttcagat
gaagatgcagagaagaaaaagagcacaaaggttaaaatctccaaaacggaagagaaacgc
aagaccagtgagagaaaacgtaagaagcgtgcggtgatagaatcagactcagaagaggaa
gaagaggagcccgtgatgaagtcaaagaaatcctccaagcagaaagggaccaccagcaaa
gcaggacttcctaaaaaggatcctgtgcagtacgtttctgaaacagactcagacggtgac
aacttcctgtccttgaagaaagtctccaaacagaacggcgctgccaagaccacaaagcca
gatccagaaggctctcgctcgggaagcaaagatcaggtgaagtctccctttaagccctcc
tccagtcaggccaaagccgggctgaagagtcctcctgcgcctaagacccctaagttggct
ccccctcctccgcccaaacaaacacccacctccgtgctcgactactttggcgtggggatg
attcaccgctcagacaagaagctggtagccagcaccaaacggaaggcgccaactcaagac
tcggacgacctgataagtgatgaagaaatggctcggcagctgcaggcggaagaggagctg
gagctggaaaaacagatccacgaggatgaggagttctccagaactctggccatgctggac
gcagagccacaggccaagaaggctcgtaaagtctcggtagataaaccaggtccaagcaca
acccccgagaagagcggcacagctgctgcaggtgtcggcggcacaagcagccccatgaag
accagaggaagccggtcagaggtcagggtgagtccatcaccgcccaagaagagccccatc
agaaccagctccaaactggctatgatgaagaagaaggacgaggtgaaggatgaaggacca
agaaacaaaacacccacgaaaaacaaagtttctcccaaaaaggaaccacttacgtcacca
gtttcagacttgaagttcacacctaaagtctcgcccaagaaacctgagattacgacgagc
atcagtcctgacgatgcagagaagaagaagctgcactcttcagcctacagaaacttcctc
aacagagaaggaccacgagctctgggctccaaagaaatcccgaagggagcggagaactgt
ttggagggctgcacgtttgtgttgacgggagtgcttgagtcgatggagagagacgacgcc
aaatctctgattgagcgctacggaggcaaagtgacgggcaatatcagcaagaagaccacc
tacctggttcagggcagagacggtggagcgtcgaagctggagaaggcggagagtttgggc
accaaaatccttgatgaagacggtttgttggacctgatcagaaccaaaccgggaaaaaag
tcaaagtacgaggttgctgcggaggcggagagcaacgcttcagagaccaggactccccgc
agccacacctcaaagaatacccccaaagcgcagaagatctccccctccaagggtaactcc
aggtccccccacaccccaagcccttcgaagaccggacagccgcagggtcacagttccggg
actggtgatggcagcaccccacctgggaggggctcgggtcagactgctcggagggagctg
ggccttcctccctccccagctccagaaaccgtgcctccatcgccggcgggggagagtctt
ctttgggtggacaagtaccgtcctcggtctctgaaggccgtgatcggccagcagggggag
cagagctgtgccaacaagctgctccgctggctgcagaactggagcaaaaaccagaacagc
accaagccggcagcagccaggtttggtaaatttggaggtggcaaagatgacgggtcagga
tttaaagctgctctgctctctggacctccaggaatagggaagaccaccacagctgctcta
gtctgtgaggagctgggcttcagctacgtggagatgaacgccagctgcactcgcagcaag
aacagtctgaaggaagtcgttgcagagtcgctgaacaacaccagtattgaggatttctac
aaaggtacgtctcagaccgtcagcagtaaacacgtcatgatcatggatgaggttgacggg
atggctggaaatgaggaccgaggaggagttcaggaacttatcgcgttgatcaaaaccacc
aagattcccatcatctgcatgtgtaacgatcgcaaccaccccaagatcagatcgttggcc
aactactgcttcgatctgcgcttccagaggccgcgggtggagcagatcaagggagccatg
atgtccattgcttacaaggaggggattaaaatcccacctccggcgctcaatgaaataatc
ttggcctccaatcaggacgtgcgacaggtgatccacaacctgagcatgtggtccgccaag
gacaaggtgatgacgtacgaccagtgcaagtcggacgcagccagcgcccgcaaggacatg
aagctggggccgttcgacgtctgcaggaaggtgtttgcctcgggcgaaggaaacgcccac
atgagcctcattgacaagtcggacctctttttccacgactactcgctggcaccgctgttc
gtccaagagaactacgtgcacgtgcgtccggctgcagctcgcggcgatgtgaagtcccac
ctggtgctgctcagcaagacggccgactccatctgtgacggcgacctggtggacaggcag
atccgctcaagacagaactggtcactgctgcccactcaggccatctatgccagcgtaata
ccaggggagctcatgaggggctacatggcccagttcccggtcttcccaagctggcttggc
aaaaactcctccactaataaacacgcccgcatcgttcaggagctggcctctcacatgagc
ttaaagacaatgggcagcaggcaggcggtgaacctggactacctgcactacctgcgactg
atgctgctgcagccgctacagaagcacggagcggagggcgccgctcaggccgtgcagctg
ctggacgactaccagctggtcagggaggatgtggacagcctcatggaggtcagcagctgg
ggcggacagccggatccttactctaaactggaccccaaggtgaaggcggcgttcacacga
gcgtacaacagagaggttcacctgacaccgtactccctgcaggttgtgaagaagggtcgt
cgtggtgctggtggggacttaggaggggaggacgtggacccagatggaaacgggtctgag
gacgacggggaggatctccaaactgatgctatgatcaaacagaagaaggccaaaaccacc
aaagagtcaaagaaggagaagaaggaagactccagcaaaggtaaaggaaaggggaaaggc
aaggctaaaaaatga
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integrated database retrieval system
