Nematolebias whitei (Rio pearlfish): 119408371
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Entry
119408371 CDS
T08042
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03020
RNA polymerase
nwh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
119408371 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
119408371 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nwh03021
]
119408371 (polr2b)
03400 DNA repair and recombination proteins [BR:
nwh03400
]
119408371 (polr2b)
Enzymes [BR:
nwh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
119408371 (polr2b)
Transcription machinery [BR:
nwh03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
119408371 (polr2b)
DNA repair and recombination proteins [BR:
nwh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
119408371 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
119408371
NCBI-ProteinID:
XP_037531100
LinkDB
All DBs
Position
4:8439658..8448840
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDNQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM
RHAIYEKLDDDGLIAPGVRVSGEDVIIGKTVTLPENEEDLDISNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSDYGY
HLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTT
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgaccaggacgaagataatcagtacgatgaagatgatgatgaaatcactccagat
ctgtggcaggaggcttgctggatcgtcatcagctcttattttgacgagaagggcctggtg
cggcagcagctggattcgttcgatgagttcatccagatgtctgttcagaggatcgtggaa
gatgctccacccattgacctgcaagctgaagcgcagcacacctcgggggaggtggaggag
ccgcctcgttacctgctgaagtttgaacagatctacctgtccaagcccactcactgggag
agagacggagccccttctcccatgatgcccaacgaagctcgactgcgaaacctcacgtac
tccgcccccctgtatgttgacatcacaaagactatcataaaggaaggtgaagagcagctg
cagacacaacaccagaaaaccttcattgggaaaattcccatcatgcttcgctctacctac
tgtctgctgagcggcctgacagatcgagatctgtgtgagctcaacgagtgtccgctggac
cctgggggttattttatcatcaacggttctgagaaggtgctgatcgcacaggagaagatg
gccacaaacactgtttacgtcttcgccaagaaggattccaaatacgcctacacggctgag
tgtcggtcctgtttggagaactcatctcgtcccaccagcaccatctgggtcagcatgatg
gccagaggaggccagggagtcaagaagagtgcgatcggtcagaggatcgtgtccacgctg
ccatacatcagacaggaagttcccatcatcattgtgtttcgagcactgggcttcgtgtcg
gacagagacatcctggaacacatcatttatgactttgacgaccccgagatgatggagatg
gtaaagccatctctggatgaagcgtttgtgatccaggagcagaacgtggcgctgaacttc
atcggttccagaggagcaaaacctggagtgacgaaagagaggaggatcaaatacgccaaa
gaagttctacagaaagaaatgctgccgcatgtcggagtcagtgacttctgtgaaaccaag
aaggcgtatttcttggggtacatggtccacaggttgctgcttgctgcgcttggcagacgg
gagcttgatgacagagatcactacggaaacaagaggctggatcttgctgggccgctcttg
gccttcctgttcaggggaatgttcaagaaccttctgaaggaaatcaggatctatgctcag
aagttcatcgacagaggaaaagacttcaacctggagctcgccatcaaaactcgcatcatc
tcagatggactcaagtactcgctggccaccgggaactggggcgacgtgaagaaggctcac
caggctcgagcgggagtgtctcaggtgttgaaccgtcttaccttcgcctccacactgtca
catcttcgcagagtaaactctcccatcggcagagacggaaaattggccaaacctcgacag
ctacacaacactctttgggggatggtgtgtcccgctgagactccagagggccatgctgta
ggtctggtgaagaacttggccctgatggcctacatctctgtgggctcccagccctcaccc
atcctggagtttttagaggagtggagtatggaaaacttggaggagatctctccagctgcc
atcgctgacgccactaagatctttgtgaatggctgctgggttggaatccacaaagatcct
gagcagctgatgaatacgctgagaaaactccgcaggcagatggatattatcgtgtctgag
gtttcgatgatcagagacatccgagagcgtgagatcagaatttacaccgacgctggacgg
atctgcagaccgctgctgattgtggagaaacagaaacttcttctgaagagacgacacatc
gaccagctgaaggagcgagaatacaacaactacagctggcaggacttggtggcgagcggc
gtggtggagtacatcgacactctggaggaggagacggttatgctcgccatgactcctgat
gatctccaggaaaaaggtgtggcctattgctcgacgtacacccactgtgagatccacccg
tccatgatcctgggagtgtgcgcctccatcatcccgttccccgaccataaccagtctccc
agaaacacgtaccagtcggctatgggcaaacaggccatgggtgtctacatcaccaacttc
cacgtgagaatggacactctggctcacgtcttgtactaccctcagaaaccactggttacc
acccgatctatggagtacctgcgattcagggagctgcctgcaggcattaattcaatagtt
gcaatcgcctcgtacacgggatacaaccaggaggattctgtgatcatgaacaggtctgca
gtggaccggggattcttcaggtctgttttctatcgatcctacaaagagcaggagtcaaag
aaaggctttgaccaagaggagatatttgagaagccaacacgtgaaacctgtcagggtatg
agacacgccatctacgaaaagctggacgatgacgggctcattgcgcccggcgttcgtgtg
tccggcgaggatgtgattatcgggaaaacggtgacgctgccggagaacgaagaggatctg
gacatcagcaaccgacgatacactaagagggactgcagcaccttcctgaggaccagtgaa
accggcattgtggaccaggtcatggtgaccctgaatcaggagggctacaagttctgcaaa
atcagggttcgttcggtccggattcctcagatcggagacaaattcgccagccgtcacgga
caaaagggaacctgtgggattcagtacagacaggaggacatgccgttcacctgcgaggga
atcacacctgacatcatcatcaaccctcacgccatcccatccagaatgactgttggccat
ctgatcgagtgtctgcaaggaaaagtttctgccaacaaaggtgagatcggtgacgccacg
ccgtttaacgacgccgtcaacgtgcagaaagtgtcgaacctgctgtctgactacggatat
cacctgagaggaaatgaggttctatacaacgggttcactgggaggaagctgacgtcacag
atcttcatcggtccgacctattatcagcgactgaagcacatggtggatgacaagatccac
tcgcgagcccgaggcccggtccagatcctcaatcgtcagccgatggaaggccgatctcgg
gacggtggcctgcgatttggagagatggagcgcgactgtcagatcgctcacggagcggct
cagttcctcagagagcgtctgtttgaggcatccgacccgtaccaggtccacgtgtgcaac
ctgtgtggactgatggccatcgcgaacacacggacacacacgtacgagtgtcgaggctgc
cgcaacaagacgcagatctctctggttcggatgccgtatgcctgcaaacttcttttccag
gagttgatgtcgatgagcattgctcctcgtatgatgaccacatag
DBGET
integrated database retrieval system
