Nematolebias whitei (Rio pearlfish): 119408377
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Entry
119408377 CDS
T08042
Symbol
abca1b
Name
(RefSeq) LOW QUALITY PROTEIN: phospholipid-transporting ATPase ABCA1b
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh02010
ABC transporters
nwh04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
119408377 (abca1b)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
119408377 (abca1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
nwh02000
]
119408377 (abca1b)
Transporters [BR:
nwh02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
119408377 (abca1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DrrA1-3_C
AAA_23
Motif
Other DBs
NCBI-GeneID:
119408377
NCBI-ProteinID:
XP_037531107
LinkDB
All DBs
Position
4:complement(8664439..8701456)
Genome browser
AA seq
2341 aa
AA seq
DB search
MSVFTQLGLLLWKNFTYRRRQTLQLLVEIIWPLFIFFILITVRLNYPPYEQHECHFPNKA
MPSAGTLPWVQGILCNAHNPCFKNTTPGESPGIVGNFNDSIISRLFSDVKKILLYSQNDK
NLEGFKELARALEILQNSRSGFKLKHFLRDNETLSSFLLRNASLPQHTVQQITEATINLE
KVLLRGLGAHLRDMCPRNGGSQNLSDFVTISDQRVLSLVQDIICEAQPEWLNHAEENFMS
NLDFFKPIRREVRSDPVAIQQVARATNNLLDSLGSLAVELAGMKSWVDLRNEIIFLTRNA
TSSPSTMYQAVSRIVCGHPEGGGLQIKSLNWYEDSNYKALFGNHNSSEDEASSLYDNSST
PFCNNLVKNMDSNPMSRMIWQALKPLLLGKILYTPHTPATQRIIHEVNRTFQELGVFRDL
GGIWEEMRPKVWDFMENSQQMDLIRMLLKNNITARFFHAQLATTDWTVADVTKFLSKLPS
EKLDGALTWREVFNETDQAIMSISRFMECVNLDKLEPVSTEERLVNQSMLLLEDRKFWAG
IVFPEIAPNTTALPAKLNYKIRMDIDNVERTNKIKDAYWDPGPRADPFEDMRYIWGGFLY
LQDVIEQGIIRALTGTREKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVSII
LKSVVYEKEARLKETMRIMGLDNGILWFSWFISSLVPLLISAGLLVLVLKKGNLLPYSDP
GIIFLFLGSYAVVTIMQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYIGYGA
KVFASLLSPVAFGFGCEYFALFEEQGVGIQWENLVSSPLQEDEFSLRTTIIVMYFDSFLY
GVLTWYIEAVFPGQYGIPRPWYFPFTKSYWFGEDGKSNKVPLNRKGNASGENGPQSGAPT
HHTLTFQEHLQPSNQEDKTKHIVKFLLXKLKCLHLFPAVCVEEEPSHLEPGVYIENLVKV
YRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSE
LSIIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEQVKGEIEHILQDTGLPHKRKS
RTSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYRQGRTIILST
HHMDEADILGDRIAIISHGKLCCVGSSLYLKNQLGTGYYLTLVKKDPETSLSSCRNSSST
VSFSKKDEESASVSSSDAGLGSEHESEAATIENGPAASICTNPFVPPDASMVSALILRHV
PAARLVEDLGHELTYILPYSAAKDGAFVELFKDLDLKLHDLGISSYGVSDTTLEEIFLKV
AEDNGVDTEVPSDGTLPVRRRRRTHAFGGGDHQSCLRPIREDDDNECNDSDGDADCRETD
WLSCTDGKGSYQVNGWSLKRQQFVALMWKRFLYARRSRKGFFAQIVLPAVFVCIALVFSL
IVPPFGKYPSLELQPWMYEDQVTFISDDAPGDTNMQKLLNALMDPPGFGTRCMDGYSIPE
APCTMGDEDWHTPDVPESIQQLFSSRNWTMANPSPDCSCTTNGRKRMLPECPDGAGGLPP
PEIKLSATDTLQNLTGRNISDYLVKTYTQIIGKSLKNKVWVNEFRYGGFSLGARSMQVLP
PANEIDDAIERVRKIFELQKGAAADRFLDNLSGFINGLDTKNNVKIWFNNKGWHSVAAFI
NVMSNGILRANLPPGKEASRYGINAFNHPLNLTKEQLSQVALVTTSVDVLVSICVIFAMS
FVPASFVVFLIQERVSKAKHMQFISGVHPLLYWLANFMWDMLNYFVPAILVILIFICFQQ
KAYVSSSNLPVLALLLLLYGWSITPLMYPASFFFKVPSTAYVVLTSINILIGINGSISTF
VMELFGDHEIGGINDILKNVLLIFPHFCLGRGLIDMVKNQAMADALERFGENRFRSPLEW
DMVGRNLLAMAVEGVVFFIITILIQYRFCIKPKPVSKLTKLGVLGEEDEDVARERHRIVQ
GLGQGDILELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTM
VTSGEAFLAGKSILREIDEVHQNMGYCPQFDAINDLLTGREHLELYAILRGVPEKEVCDV
AEWGIRKLSLLKYSDKRAGSYSGGNLRKLSTAIALIGAPPVVFLDEPTTGMDPKARRALW
NCIHSIIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILR
VAGPDPDLLPVMKFIESELSGSTLKEKHRNMLQYQLPSSLTSLAHIFSILAKNKDTLRIE
DYSVTQTTLDQVFVNFAKDQSDDYVSKDASVRRKDVTINISALGSTHGATEGGGGQQESV
M
NT seq
7026 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtcttcactcagttgggtctgctgctatggaagaacttcacctacagacgaaga
cagacgctccagctcctggtggaaatcatctggccgctcttcatcttcttcatcctcatc
accgtgcggctgaactaccctccatatgagcaacatgagtgtcattttcctaacaaggcg
atgccgtcagccggaacgctgccctgggttcagggaatcctctgcaacgcccacaacccc
tgcttcaagaacaccacaccgggcgagtctccgggcatcgtcgggaacttcaacgactcc
ataatttctcgcctgttttcggacgtgaagaagatcctcttgtacagtcagaatgataag
aacctggagggtttcaaggagctggcccgggccctggagattttgcagaacagccgctca
ggcttcaagttgaagcatttcctgcgagacaatgagactctgtcgagctttctgctgagg
aacgcctctctgccccagcacaccgttcagcagatcactgaggccaccatcaacctggag
aaggtactcctcagaggtttgggggcccacctgagggacatgtgtcccaggaacggcggg
agccagaatttgtcggactttgtgaccatctcggaccagcgggtgctgtctctggtgcag
gacatcatctgtgaggcgcagcccgagtggctgaatcacgctgaggagaactttatgagc
aacctggacttcttcaaaccaatccggagggaggtccggtcggacccggtggcgatccag
caggtcgccagagccaccaacaaccttctggacagtctgggttctctggctgtggagttg
gccgggatgaagagctgggtggacctgaggaatgagatcatcttcctgactcggaacgcc
acctcatcacccagcaccatgtaccaagcggtctccaggatcgtgtgcggtcaccccgaa
ggcggcggtctgcagatcaagtctctgaactggtacgaggacagcaactacaaggccctg
ttcgggaaccacaacagcagcgaggacgaggcctcttcgctctatgacaactcctccact
cccttctgtaacaacctggtgaagaacatggactcaaacccgatgtcccggatgatctgg
caggctctgaaacctctgttgctggggaagatcctgtacaccccccacacccctgccaca
cagcggatcatccacgaggtgaaccgcacctttcaggagctcggtgtgttcagggacctg
ggtggcatatgggaggagatgagacccaaggtctgggacttcatggaaaacagccagcag
atggacctgatcaggatgctgctgaagaacaacatcactgccagattcttccatgctcag
ctcgccaccactgattggacggtggccgatgtgacaaagttcctgtccaagcttccgtca
gagaagctcgacggcgccctcacctggagggaggtgtttaacgagaccgaccaggccatc
atgagcatctctcgcttcatggagtgtgtgaacctggacaagctggagccggtctccacc
gaggagcggctcgttaaccagtccatgctgttgctggaggacaggaagttctgggcgggg
atcgtgttccctgagatcgctccaaacaccaccgcactcccggcgaaactcaattacaag
atccggatggacatcgacaacgtggagcggaccaacaagatcaaagacgcgtactgggac
ccaggtcctcgtgccgacccatttgaggacatgcggtacatctggggcgggttcttgtat
ctgcaagatgtgatcgagcagggcatcatcagagcgctgacaggcaccagagagaaaacc
ggagtgtacatccagcaaatgccatacccctgctacgtggacgacatcttcctgcgggtg
atgagccgctccatgccgctcttcatgacgctggcctggatgtattcggtgtccatcatc
cttaagagcgtggtgtatgagaaggaggcccggctgaaggagaccatgaggattatgggt
ctggataacggtatcctgtggttcagctggttcattagcagcctggttcctctgctgatc
agcgctggactgctggtgctggtgctcaagaaggggaacctgctgccttatagtgaccca
ggcatcatcttcctcttcctgggatcttacgccgtggtcaccatcatgcagtgtttcctc
ataagcacgttgttttctcgtgctaacctggctgccgcctgcggaggaatcatctacttc
accctctacctgccatacgtcctctgcgtggcctggcaggactacatcggctacggagcc
aaagtcttcgctagcctgctgtcccctgtggcgttcgggtttggctgcgagtactttgca
ctgtttgaggagcagggagttggtatccagtgggagaacctggtgtcaagtccccttcag
gaggacgaattcagccttcgtaccaccatcatcgtcatgtactttgactccttcctgtac
ggagtcctcacctggtacatcgaagctgtgtttccaggtcagtatgggatccctcgacca
tggtactttcccttcaccaagtcctactggtttggagaggatgggaagtccaataaagtc
cctctgaaccggaaaggaaacgcttcaggtgagaatggaccgcagagtggagccccaact
catcacacattaacatttcaagaacatctgcaaccatcaaaccaagaagacaaaaccaaa
cacatcgtgaagtttttactttgaaagttaaagtgtctgcacctgttcccagctgtgtgt
gtggaggaggagccaagtcacctggagccaggagtctacatcgagaacctggtgaaggtc
taccgtcacggtaaaaagctggcagtggacggactaacgctgggattctatgagggacaa
atcacgtctttcctgggacacaacggagccgggaaaaccaccacaatgtccatcttgact
ggcctgttcccacccacctccggcaccgcctacatcctgggtaaagacatccggtcagag
ctgagcattatcagacagagtcttggtgtctgtccacagcacaacgtcctcttcagcatg
ttgactgtagaggagcacatttggttctacgctcggcttaaaggcctgtcagaggagcag
gtcaaaggtgagatcgagcacattctgcaggacacagggctgccgcacaaacgcaagtcc
aggaccagcactctctcagggggcatgcagaggaagctgtctgtggctctagcctttgtt
ggggggtcgaaggtggtgatcctggatgagcccacagccggtgtcgacccctatgctcgt
agagggatctgggacctgctgctgaagtacagacagggtcggaccattatcctgtcaacg
caccacatggacgaggcggacatcctgggcgaccgcatcgctatcatctcccacggaaag
ctgtgctgcgtaggttcatctctgtacctgaagaaccagctcgggacgggatactacctg
acactggtgaaaaaggacccagagacatcgctaagctcctgcaggaactcgtccagcacc
gtgtccttcagcaagaaggatgaggagagcgcctcggtcagcagtagtgacgcaggactc
ggcagcgaacatgaaagtgaggcagccaccatcgagaacggccccgcagcgtccatctgc
accaacccctttgtcccgcccgacgcgtccatggtgtcggctctgatcttgcggcacgtt
ccggccgctcgtctggtggaggacctggggcacgagctcacctacattctcccgtacagc
gctgctaaagacggagccttcgtggagctcttcaaagacctggacctaaagctgcatgac
ctcggcatctccagctacggagtgtctgacaccacactggaggagattttcttaaaagtg
gctgaagataacggagttgacactgaagtcccctcagatgggacacttcctgttcggagg
cggagaaggactcacgccttcgggggtggagaccaccagagctgcctaagaccgatacgg
gaggacgacgacaacgagtgcaacgactcggatggagatgccgactgcagggaaacagac
tggttgagctgcaccgatggtaaaggctcttatcaggtgaatgggtggagcctgaagagg
cagcagttcgtggcactgatgtggaaacgcttcctgtacgctcggcgctccagaaagggc
ttctttgctcagattgttcttccggccgtgttcgtctgcatcgccctcgtcttcagtctc
atcgtgccgccgtttggaaagtatccgagtctggagctgcagccgtggatgtacgaggac
caggtcacctttatcagcgatgacgctcctggagacaccaacatgcagaagttactaaat
gctctgatggaccctcctggtttcggcactcgctgcatggacggatattccatcccagag
gccccttgtacgatgggcgatgaagactggcacacccctgatgtcccagagagcatccag
cagctgttcagctccagaaactggaccatggcgaacccgtccccagactgttcctgcacc
accaacggcaggaagaggatgctgccagaatgtcccgatggagccggaggtctcccccca
cctgagattaaactgagcgccaccgacacgctgcagaacctgacaggaaggaacatctca
gactacctggtgaagacgtacactcagatcatcggaaagagcctgaagaacaaagtctgg
gtgaatgagttcaggtatggaggcttctcattgggcgccaggagcatgcaggtcctccca
ccggccaatgagattgatgatgccatcgagagagtcagaaagatctttgagcttcagaag
ggagcagctgcagatcgattcctggacaatctgtctggcttcatcaatggcctcgacacc
aaaaacaatgtaaagatctggtttaacaacaaaggctggcacagcgttgcagcgtttatc
aacgtgatgagtaatggcatcctaagagcaaacctgccgccaggtaaagaggccagcagg
tacggcatcaacgccttcaaccacccactgaacctgaccaaagagcagctgtcccaggtc
gccctggtaacaacctctgtggacgtcttggtatccatctgtgtcatctttgccatgtcc
ttcgtccctgcaagcttcgtggtcttcctcatccaggagcgcgtcagtaaagccaaacac
atgcagttcatcagcggcgtccatccgctgctctactggctggccaacttcatgtgggac
atgttaaactactttgtcccagcaatactcgtcatcctcatcttcatctgcttccaacaa
aaagcctatgtatcgtccagcaaccttccagtgctcgctctgctgctgctgctctatgga
tggtccatcacgccgctcatgtaccccgcctccttcttctttaaggtccccagcacggcg
tacgtcgttctcaccagcatcaacatcctcatcggcatcaacggcagcatctccactttc
gtcatggagctgttcggagaccacgaaatcggcggcattaacgacatcttgaagaacgtc
ctcctcatcttccctcacttctgtctcggtcgaggtcttattgatatggtgaagaaccag
gcgatggccgacgccctcgagagatttggtgagaacaggttccgctctccgctggagtgg
gacatggtgggaaggaacctgctcgccatggctgtagagggtgtggtgttcttcatcatc
actattctcatccagtaccgcttctgcatcaagcccaagccagtcagtaaactcacaaaa
ctgggagtgctgggagaagaagatgaggatgtggctcgagagagacatcggattgtccag
ggcctcggccagggagacatcctggagctccggcagctcacaaaggtgtttaaaaggaag
cagaagccggctgtggatcgactgtgtgttgggattccacctggagagtgtttcggtctg
ctcggagtgaacggagccgggaaaacaaccacgttcaagatgctgacaggagacaccatg
gtgaccagcggtgaggccttcttggctgggaagagcatcctcagggagattgacgaggtc
catcagaacatgggctactgtcctcagtttgatgccatcaacgatctgctgacaggaaga
gaacacctagagctgtacgccatcctcagaggcgtccccgagaaggaagtctgtgacgtg
gcagagtggggcatcaggaagttgagtctgctgaagtattcagataaacgggctggaagt
tacagcggaggaaacctgaggaagctgtctacggccatcgctctgatcggagcgccacca
gtcgttttcctggacgaacccaccactggcatggaccccaaggcccgccgagccctctgg
aactgcatccacagcatcatcaaggagggacgttctgtcgtcctcacctcccacagtatg
gaggagtgtgaagctctgtgcaccaggatggcaatcatggtgaacggcaggttcagatgt
cttggcagtgtccaacacctgaagaacaggtttggtgatgggtacaccatcattctgcgg
gtggcgggacccgacccggacctccttcccgtcatgaagttcatagagagcgagctgagc
ggcagcacgctgaaggagaagcaccgcaacatgctgcagtaccagctgccgtcgtcgctc
acatcgctcgcccacatcttctccatcctcgccaagaacaaggacacgctcaggatcgag
gactactccgtcactcagaccacgctggatcaggtgtttgtgaactttgcgaaggaccaa
agtgacgactacgtgtccaaagatgcatcagtgaggcggaaagatgtcaccatcaacatt
tcagcgttaggctccacccacggagccaccgagggagggggtggacagcaggagagcgtc
atgtga
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integrated database retrieval system
