Nematolebias whitei (Rio pearlfish): 119408385
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Entry
119408385 CDS
T08042
Name
(RefSeq) protocadherin-1
KO
K16498
protocadherin delta 1
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
119408385
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
nwh01009
]
119408385
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
nwh04515
]
119408385
Protein phosphatases and associated proteins [BR:
nwh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
119408385
Cell adhesion molecules [BR:
nwh04515
]
Cadherins
Protocadherins
119408385
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Fibulin_C
TMEM154
Stevor
Motif
Other DBs
NCBI-GeneID:
119408385
NCBI-ProteinID:
XP_037531119
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All DBs
Position
4:complement(10257606..10462352)
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AA seq
1213 aa
AA seq
DB search
MALMRWDVLALLAVVLTVSCGAAPTDILYRVPEEQPPNTLIGSLAADQGLPDTGHLYKLE
IGAPYLRVDGKTGDIYTTEVPIDRETLRDCRNLFEDDKCFLEFEVTITDMVKGIGLGPRL
IEGLIEVLDINDNTPQFSSPILSLAIPENTHIGALFSISMATDRDSGSNGVAEYSLSAGP
DADQLFTLQVALDTDEKLPQLVVLGNLDREKKDSYDLNIRVVDGGKPPRASSALLRVTVT
DQNDNSPKFERNHYEADLPENSPLGHSVLQVRANDADTGINGEIDYSLHQASEAVQRQLR
IDRSTGIIYVKGLVDREEETFLKFFVVARDRGPNSKSSKVLVTINVKDQNDNSPAIEIRG
FGLVIHQEGVANISEDMPIGTPVALVQVSDRDEGENAVVTCVVAGDVPFQLRPASESASD
QKRKYFLQTTTLLDYERIKDYRIEIVAVDSGNPALSSTNSLKVQVTDINDNTPSFSPPLL
EVDFAEGNQPGDKVLDVVASDADSGSNAELIYSIIELSAARLFEVDANTGEVRVKNMLDR
EDKEHYKFHVAAADKGIPSKTGTATVVVNVLDRNDNDPKFTLNGYSFSVIENMPPLNPVG
VVTVNDADKGENSRVTLFVEPDNGKFIIQNGTRTILSSISFDREKESTYTFRLKAVDSGE
PPRSSFVGVTINVLDENDNAPYVTKPSNSSFIYLAPVTPPDTRVEVVEAEDIDAGPNAEL
LYSITGGNPYGLFHISSSSGEITLTRPLPGKHNGLHRLVVKVSDRGKPPRHTTALVHVFI
NETKSNVSLIEALVGHSLYTPLDRDIAGDPDYSYNQQRNNVLYAVLAGIAVVILIIIAVV
VIRYWLQRDTKSGYQAGKKESKDLYAPKQGPKNGKVKKNKKNKAPKPTKPLEEDEEASLQ
KGLKFNLINEVNDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQAVQ
DLPATNTFVGTGDNNSTGSDQYSDYSYKANPPKYSSKQLPHRRVTFSTSNQAQDLQDASQ
HSYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEMEHPENDLRPLPDVA
MTGNCTRECTEFGHSDSCWMPGQPSPNRKVSKSCAPKLSTFVPYQEMDGQEHLMANGSPK
PMITEERGTGGAGGSNSKVASMRFMTPYSSAYPGSGDSSGKDCGLEEIPLSQAAEYHSAT
TPTGQTSKREIYL
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atggctctgatgaggtgggatgttctggcgctcctggctgttgtcttgacagtttcatgc
ggcgcggcgcccacagacatcctgtaccgggttcctgaggagcagccgcccaacacgcta
attggcagcctggctgcagatcagggcctgcctgataccggacatctctacaagctggag
attggcgctccgtacctccgagtggacgggaaaactggagacatctataccactgaggtc
cccatcgaccgtgagacgctcagagactgccgcaacctgttcgaggacgataaatgcttc
ctggagtttgaggtgacgatcaccgacatggtgaaggggatcggattggggccgcggctt
attgaaggtctcattgaggttctggacatcaacgacaacacgccgcagttctcctcaccg
atcctctccctggccatccctgagaacacgcacatcggcgccctcttctctatctccatg
gcgaccgacagggactccggctccaacggcgtggccgagtactctctgagcgccggacca
gatgccgaccagctcttcaccctgcaggtggccctggacacggacgagaagctgccgcag
ctggttgtcttgggaaacttggaccgggagaagaaggactcgtacgacctgaacattcga
gtcgtggatggtgggaagccgccgagggcaagcagcgctctgctgcgggtcaccgtgacg
gatcagaacgacaactcgcccaagttcgagaggaatcactacgaggccgacctgccggag
aacagtccacttggacactcggtgctgcaggtccgagccaacgatgcagacaccggcatc
aatggggagatagactacagcctacaccaggcgtccgaggcggtccagaggcagctgcgc
atcgatcgctctacaggaatcatttacgtcaaaggcctggtggacagagaggaagagact
ttcctcaagttcttcgtggtcgccagagatcgtggacccaactcaaagagttccaaggtt
ttggtgactatcaatgtcaaggaccagaacgataattcgccagctatcgagatccgtggt
tttggcttggtaatccaccaggaaggtgtggccaacatatctgaggacatgccgatcggt
acgccggtggcgctggtccaagtctcggaccgggatgagggggaaaatgctgtggtgacg
tgtgtggttgctggagatgtaccgtttcagctacgacctgcaagcgagtcagccagcgat
caaaagagaaagtacttccttcagacgacgaccctgctagattatgaacgtattaaggat
tacaggattgaaattgtggctgtggattctggaaacccggctctatctagcaccaactcc
ctcaaagtccaggtcacagatataaatgacaacacgccaagtttttctccaccgctgctt
gaagtggactttgcagagggcaaccagcccggtgacaaagtccttgatgtggtggcctca
gacgcagacagcggcagtaatgcagagttgatttatagcatcatcgagctctctgccgcc
agactctttgaggttgatgccaacactggggaggttcgggtaaagaacatgctggatcga
gaggacaaagaacattacaagttccacgttgcagcagcagacaaaggcattccaagtaaa
accggaactgctacagtggtggtgaatgttctcgatcgcaacgacaacgaccccaaattc
acactgaatggctacagcttctctgtcattgagaacatgcctccactaaatcctgttggg
gttgtaactgttaatgatgctgataagggcgagaactccagagtgactctgtttgtggaa
ccggacaatggaaagttcatcatccagaacggcacaagaaccatcctgtccagtatttcg
tttgaccgtgaaaaagaaagcacctacaccttccgtctaaaggctgtggattctggggaa
ccccctcgatcctcctttgtaggagtcaccatcaatgtcctggacgagaacgacaatgcc
ccctatgtcaccaaaccgtctaactcttccttcatataccttgcacctgtcacacctcca
gacacacgagttgaggtagtcgaggcagaggacatcgacgctggacctaatgctgagctg
ctgtactccatcacaggcggaaacccttacggcctgttccatatatcatccagcagtggg
gagatcacattgacacgacctttacctggcaagcacaatgggctccaccggctggtagtg
aaggtcagtgatcgaggcaaaccccctcgtcacaccactgcgctggtccacgtcttcata
aatgaaaccaaatccaatgtgtccctcattgaggcgttggttggtcacagtctctacaca
cctctagacagagacattgcaggagacccggactactcctacaatcaacaacgcaacaat
gttttgtacgccgtcctcgcaggcattgctgttgtgattctgatcattatagccgtggtg
gttatcagatactggctgcagagggataccaagagtgggtaccaagctggcaagaaggag
agtaaggatctgtatgctcccaaacagggtccaaaaaatggcaaagtaaaaaagaacaag
aaaaacaaagctccaaaacccactaagccactggaggaggacgaggaagccagtctgcag
aaaggcctcaagttcaacctcattaatgaagtcaacgacagtcccagaatccatctcccc
ctgaattacccaccaggaagtcccgatctgggccgtcactaccggtccaactctcccttg
ccttctatccagcttcaaccacagtcaccctctgcatccaagaagcaccaggctgttcag
gacctcccagctaccaacaccttcgtaggaacaggcgacaacaactccacgggctccgac
caatattcggattacagctacaaggccaacccacccaaatacagcagcaaacagctgccc
caccgacgggtcaccttctccacctccaaccaggcccaggatctgcaggatgcctcccaa
cacagctactacgacagtggcctggaggagtcagagacccccagctccaagtcgtcgtcg
gggccgcggatcggaccgctggctctgccggaggaccactacgagagaaccacacctgac
ggcagcatcggagagatggaacacccggagaacgacctcaggcctcttcccgacgtggcg
atgaccggtaactgcacccgtgagtgcactgagtttggccattctgactcctgctggatg
cccggccagccttcccccaaccgcaaggtgtccaagagctgcgcccccaagctctccacc
ttcgtgccttaccaggagatggacggacaggagcatctgatggccaatggcagccccaag
cccatgatcacagaggagcgtgggacaggcggcgccggtggcagcaactccaaagtggcc
agcatgaggttcatgaccccctacagcagtgcctaccccgggagcggagactcatctggt
aaagactgtggtctggaggagatccctctgagccaggcggcagagtaccactcggctacc
acccccaccggccagacctcaaagagggagatctacctgtga
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