Nematolebias whitei (Rio pearlfish): 119408434
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Entry
119408434 CDS
T08042
Symbol
pcdh11
Name
(RefSeq) protocadherin-11 X-linked isoform X1
KO
K16498
protocadherin delta 1
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
119408434 (pcdh11)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
nwh01009
]
119408434 (pcdh11)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
nwh04515
]
119408434 (pcdh11)
Protein phosphatases and associated proteins [BR:
nwh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
119408434 (pcdh11)
Cell adhesion molecules [BR:
nwh04515
]
Cadherins
Protocadherins
119408434 (pcdh11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
TMEM154
DUF6249
DUF6377
Motif
Other DBs
NCBI-GeneID:
119408434
NCBI-ProteinID:
XP_037531186
LinkDB
All DBs
Position
4:18422659..18608822
Genome browser
AA seq
1043 aa
AA seq
DB search
MNLASQVHALVILLTCLVLLCKAQERDYIVKEEQPENVRIGNLRKDLDLHLDPNIRLSSP
LQFKPVYKTGDVPLVRVEANTGEIFTTSHRIDREKLCSGVFNEKRCYYEIEVAVLPDEIF
RLVKIRFLIEDVNDNAPLFQSTVINISIPENTAINTRYPVPSAFDPDVGINGIQHYELVK
SVNEFGLDIIETPEGDKWPQLIVQQNLDREQKDTFVMKIKVEDGGSPPKSSTAILQVTIS
DVNDNRPIFKDSELEVSVPENAPMGTSVAQLHATDADLGSNAQIHFAFSNQVSFSTKRHF
AINSSTGLITVKQPLDREVTPVHKLIVLASDGSSTPSRATVIVNVTDVNDNVPSIDTRYI
INLVNGTVLLSENAPLNTKIALITVTDKDADLYGKVACYTDHDVPFRLKPVFNDQFLLET
AAPLDFETTREYAIKIVASDRGTPPLNTSAMVLIKIKDENDNAPIFPQPEIQLSIPENND
PSTQLIKISATDADSGHNAEIIYTLGPDAPDGFNVDRQLGILSVGKRLDREKQERYSFTV
MARDNGSTPLLSNVTVRLIVQDLNDNSPAFTHPEYNFYVPENLPLYGTVGLITVTDADAG
DNAVITLSILNGKDNFIIDPQTGVIKPNITFDREQQSSYTFMVKAVDGGQPPSTSYAKVT
INVVDVNDNRPVFVIPSSNYSYDLVRTITTPGSVVTRVFAIDNDTGMNAELHYSIISSII
ITSRVSPRGLFTIDKTTGNITLQEKIVLADQGLHRLVVKVKDLGQPESLHAITLVHLFVN
DTVSNATFIQEQLRKSMETPLDRNIGDNEVTPQANGYVIVVIAIIAGTMTVILVIFVTAL
VRCRQTPRHKVVQKGKQSGEWVSPNQENRQIKKKKKRKKRSPKSLLLNFVTIDESKPEDP
THEHVNGTLDLPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPV
APKKHHVIQELPLDNTFVVGCDSLSKCSSTSSDQYSVSGCGCQGGFKTAGQITTRQEMAL
NPPHYGTLCDTGTARSHRIKINL
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgaacttggcaagtcaggtgcatgcactggtgatcttgctcacctgtttggtcttacta
tgcaaggcccaggagagggactacatcgtgaaagaggagcagccagagaacgtccgcata
gggaatctgcgcaaggacctcgacctccatcttgacccgaacatcaggctatcctcgcca
ctgcagttcaagcctgtgtataaaacaggcgacgtgcctttggtgagggtggaggccaac
acgggggagatttttaccaccagtcacagaattgacagggagaagctgtgctcaggagtc
ttcaatgagaaacgctgctactacgagatcgaggtggccgtgctgcccgatgagatcttc
agattggttaagatccgtttcctgatcgaggacgtaaatgacaacgccccactttttcag
tctactgttataaacatctccatccctgagaacacagccatcaacacccgatacccggtg
ccatcggcctttgaccctgacgtggggataaatgggattcaacattatgagctggtcaag
agtgtcaatgaatttggcttagacatcattgagacccctgaaggtgacaagtggcctcaa
ctgattgttcagcagaaccttgaccgggagcaaaaagacacctttgtaatgaagatcaag
gtggaggatggtggcagcccacccaagtctagcactgctattctccaagttaccatctca
gatgtcaatgacaatcgtccaatcttcaaggacagtgaactggaggtttctgtgccagag
aatgctccaatggggacgtcagttgctcagcttcatgccacagatgcagacttgggttct
aatgcacaaatccactttgctttcagcaaccaggtctccttctcaaccaagcgtcatttt
gctatcaacagttccactgggctgatcactgtgaagcaaccgttggacagggaggtgact
cctgtacataaactcatagttctagcaagtgatggcagctccaccccatccagagctaca
gtgattgttaatgtcactgatgtcaatgacaatgtgccctccatagacactcgctacatt
atcaacctggtaaacgggactgtactgctgtctgagaatgcacccctcaataccaaaata
gcccttattactgttactgacaaggatgcagatctgtatggaaaagtggcttgctacacc
gaccatgatgttcctttccggttgaagccagtctttaatgatcagttcttattagagaca
gctgctcctcttgattttgagacaactcgagaatatgctattaagatagtggcctcggat
agagggacacctcctttgaacacttcagctatggttctaattaaaatcaaggatgagaat
gacaatgcacccatctttcctcagcctgaaattcagctttccataccggagaacaatgac
ccttcaacacagctaataaaaatcagtgccacagatgcagatagtgggcataatgcagag
attatttatactcttggccctgatgcacctgatgggtttaatgtagacaggcagttagga
attctctctgttgggaagcgactagacagagagaaacaggagaggtactcattcactgtc
atggcaagagacaatggttcaacccccctactgagcaacgtcaccgttaggctaattgtc
caggaccttaatgacaacagcccagctttcacacaccctgaatacaacttctatgtgcct
gagaacctgcctctctatggcactgttggtttaatcacagtgactgatgcagatgcagga
gataatgctgttataactctgtctattttgaatgggaaagacaatttcatcattgatcca
caaacgggtgtgattaaaccaaacatcacttttgacagggagcagcaaagctcttacaca
tttatggtcaaagcagttgatggagggcagccgcccagcacttcttatgctaaggtcact
attaatgtagtggatgtgaatgacaatcgccctgtgtttgtcatcccttcctccaattac
tcatatgacctagtgcggaccatcaccacccctggttctgtggtcaccagagtgtttgcc
attgacaatgacacaggtatgaatgctgagctgcattacagtattatcagcagcataatc
atcacttctagggtctcccctcgaggtctctttaccattgataaaacaacgggtaacata
actctgcaggagaaaatagtattagctgatcagggactgcataggctggtagtcaaggtc
aaagatttaggccagcctgagtcattacacgctatcactcttgttcacttgtttgtcaat
gacactgtgtcaaatgctacctttatccaagagcagctgcggaaaagtatggaaacaccg
ctggatcgtaacataggggacaatgaggtaacacctcaagcgaatggatatgtaattgtt
gtaatagctatcatagcagggaccatgactgtcatcttggtgatatttgttactgccttg
gtacgatgccggcagacacccagacataaagtagttcagaagggcaagcagagtggggag
tgggtgtcacccaatcaagaaaatcgtcagatcaaaaagaagaagaaaagaaagaagcga
tcccctaagagccttcttttgaactttgtgaccatagatgaatccaagcctgaagacccc
acgcatgagcatgttaatggaacattggatctccctgtggagctggaggagcaaaccatg
ggaaagtacaattgggcgaccacacccacgaccttcaaacctgacagcccagatttagcc
aagcattacaagtctgcatcacctcagcctacatttcaaatcaaaccagaaactcctgtg
gcccctaagaaacaccacgtgatccaggagctccctttggacaacacatttgtggtgggc
tgtgactcactttccaagtgttcatcgactagctccgaccagtacagtgtctcagggtgc
ggctgtcaggggggattcaagactgcagggcaaatcaccacccggcaggagatggcactg
aacccaccacactatggcacactctgtgacacaggtacagctcgctcccacaggattaaa
atcaatctctag
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