Nematolebias whitei (Rio pearlfish): 119408566
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Entry
119408566 CDS
T08042
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
119408566 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nwh03021
]
119408566 (polr1a)
Enzymes [BR:
nwh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
119408566 (polr1a)
Transcription machinery [BR:
nwh03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
119408566 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box
Pox_C7_F8A
Motif
Other DBs
NCBI-GeneID:
119408566
NCBI-ProteinID:
XP_037531337
LinkDB
All DBs
Position
4:35619112..35671842
Genome browser
AA seq
1677 aa
AA seq
DB search
MLFSKEVPWRRLEGMTFGLYSAEEIRRLSVKAVTNPKFLDSVGNVAPHSLYDLALGPADI
KEVCSTCCQDFNNCPGHFGHVDLPLPVYNPLFFDKLYLLIRGSCLSCHMLTCTRAAIYLL
LNQLRLVDHGAMQEVYQIEHILNQHLEENPKTTGDEIKEVLNGFTDRIVGANTERPENSR
PIKHLVEKKSSLISDFWKNQMKIRKCPYCRGGRCTVRREHNSKLIVTLPSGTQTKPNDLV
SGKRIFLTASTAQEHITKVWEKEGFFLKCLFPGLEETTESNEGQKGFGPDLFFLELLLVP
PCRYRPINRLGDQMFTNGQTVNMQAVMKDCGVIRKLLALIAGEKSSEQAQAADPEDEIFL
SGIVGQTLPEKLYNVWIHLQSHVNIVFDSEMDKLMTEKYPGIRQILEKKEGLFRKHMMGK
RVDYAARSVICPDMFIETNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPSTHPGAS
MVINEDGRKTILSASDFAQREAVAKQLLTPCPVPHTMPMKIVNRHIKNGDVLLLNRQPTL
HRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYTLVSTNQ
QYLVPKDGKPLAGLIQDHMVSGTKMTIRGCFFTRDQYTELVYRGLTDKSGRVKLLPPALL
RPQHLWTGKQVVSTLLLNIIPEKAVPLNLVGRSKIPSKAWIQVPPRAAPGYRADSMCDSQ
VVIRQGELLVGVLDKAHYGSSAYGLVHSCYELYGGETSGKLLSCLARLFTAYLQLYRGFT
LGVEDILVKPGANIQRKKIIDESLKIGNNALQLAFNLQPDIDPAEARSRWQDAHLNPDQR
DFSMADHKFKEVANQVNNSINKVCMPVGLHTSFPDNNLQLMVQSGAKGSTVNTMQISCLL
GQIELEGRRPPLMPSGKFLPCFQPYDPSPGAGGFVSGRFLTGIKPQEFFFHCMAGREGLV
DTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTPFLQPRQ
FPFIEDNYEVIRQSQGLDRVLTHLDPQSASCHFAAIQRWKAKRGAACPRTGAFLLFSQKK
LAKLRETLGAESTTHPDPAVVQLGKQWHSLDEAGRARYCRKSSRCPEPSLSRFRPDICFG
SVSENFHNITEEYLQNRTSDRQDCLDSHSLRQLLHYKWQRALCDPGEAVGLLAAQSIGEP
STQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSVPVLNNRKALKRARALR
KKLSRVCLAEVLQKVDVVETLRIEKYHKHRIFKVTFTFLPPDRYHDDKLLSPHQILRYME
TRFFRLFLEAMKKRVAKLASIAVETRKASLRDKDPDVEETAATAELDEGGEEGEIVDDQG
DEGDADASDAKIRSKQEEEVDYESEDEDESDDAEDKEDGEAQENPESNSVEESQPEPAPV
IVETKKKGPSEDSLVQTRVNSVLQINSAVEKYSFDQEQELWCEIQLALPVNKVHFDLTSV
LSTLAQNAVIMETKGLSRCLLSETTTKTGDKQTVLNTEGVNMHEIFKYSDILDINRLYSN
EVHAMANTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGAYKPLNRHAIQ
SNSSPLQQMTFETSYKFLKQATMLGSHDQLVSPSACLVVGKVVRGGTGLFELKQPLQ
NT seq
5034 nt
NT seq
+upstream
nt +downstream
nt
atgttattttccaaagaggtgccatggcggcgcttagagggcatgacgttcgggctgtac
tcagctgaggagattcggaggctgagcgtgaaggctgtcactaaccccaagtttctggac
tctgtggggaatgtggcccctcacagtctgtatgacctggctctggggccagcagacatc
aaagaggtttgttcaacctgctgccaggatttcaacaactgtcctggacactttggacac
gtagacctgcctcttcctgtgtacaacccactgttctttgataagctctacttgttgatc
cgtggttcctgtctgtcatgtcacatgttgacgtgcactcgagctgccatctacctgctg
ctgaaccagctcaggttagtggaccacggagccatgcaggaagtctatcaaatcgaacac
attctgaaccagcacctggaggagaacccaaaaaccacaggagatgagattaaagaagtg
ctgaacgggtttacagacaggatagttggagcaaacactgaacgtccagaaaactccaga
cccattaaacacctggttgagaagaagagcagcctgatcagtgacttctggaagaatcaa
atgaagatcaggaagtgtccttactgcagggggggcaggtgtacagtgcgacgtgaacac
aacagtaagctcattgtcaccttgccatcaggaacacaaaccaaaccaaacgatctggtg
tctgggaagagaatcttcctgacggccagcacagcccaagaacacatcaccaaagtgtgg
gagaaggaagggttcttcctgaagtgtctgtttcccggactggaagagaccacggagtcc
aacgagggacagaaaggtttcggtccagacctgttcttcctggagctgctgctggtccca
ccctgcaggtatcgtcccatcaaccgactgggcgaccagatgttcaccaatggtcagacg
gtcaacatgcaggctgtgatgaaggactgcggggtcatcagaaaactactggctctcatt
gcaggagaaaagagttctgagcaggcacaggctgcagatccagaagatgagatttttctc
tctgggattgttggacagacgctacctgaaaaattgtacaacgtgtggatccacttgcag
agccacgtcaacattgtctttgacagcgaaatggacaaactgatgacagagaagtaccca
ggaattagacagatcctggagaaaaaagagggattgttccggaaacacatgatgggaaag
cgagtggactacgctgcccgctccgtcatttgtcccgacatgttcatcgagaccaatgag
ataggaatacccatggtttttgccaccaagctgacgtaccctcagcccgtcacaccgtgg
aacgtaaaggagctccggcaggcggttctgaacgggcccagcactcatcccggtgcctcc
atggtgatcaacgaggacggcagaaagaccatcctgtcagcttcagactttgctcagagg
gaagcggtcgccaagcagctgctgacaccctgtccagtgccacatacgatgcccatgaag
atcgtaaaccgccacataaagaacggagatgttttgttgctcaacagacagccgactctg
cacagaccctccatacaagcccactgcgctcgcatcttaccaggagagaaggtgctcagg
ctccattacgccaactgtaaggcgtacaatgctgactttgatggagatgaaatgaacgct
cacttccctcagagtgagctgggccgagcagaagcctacacattggtcagcaccaaccag
cagtacctcgtccccaaggacgggaaacccttagcaggtctgatccaggaccacatggta
tcaggtaccaagatgacgatacgaggctgcttcttcaccagagaccagtacacggagttg
gtgtatcgaggactgactgacaagtcgggcagggtgaagctgctgcctccagctctgctc
agacctcagcacctgtggactgggaagcaggtggtgtccacgttgctgctcaacataatc
ccagagaaagctgtgcctctaaacctggtggggaggtccaagatccccagcaaggcatgg
attcaggtccccccacgagccgcccccggatacagagcagacagcatgtgtgactctcag
gtggtgatccgtcagggggagctgttagtcggggttctggacaaagctcactacggttcc
tcggcctacggtttggtccacagctgctatgagctgtacggaggggagaccagtgggaag
ctgctcagctgcctggcccggctcttcacagcatacctgcagctgtacagaggcttcact
ctgggtgtggaggacatccttgtcaagcctggagccaatattcagaggaagaagattatt
gatgaatccctgaagattggcaacaacgccctccagctagcgttcaacctgcagcctgac
atagatccagctgaagctcggagccggtggcaggacgctcacctcaaccccgaccagaga
gacttcagcatggccgaccacaagttcaaagaggtggccaaccaagtgaacaacagcatc
aacaaggtgtgtatgccagtgggactgcacacgtcttttccagacaacaacctgcagctc
atggtccagtcaggagccaagggctctacagtcaacaccatgcagatctcgtgtctgctg
ggtcagatcgagttggaaggccgtcggcctccactgatgccttctgggaaattcctgccg
tgctttcagccatacgacccgtcccccggtgccgggggctttgtgtctggaaggtttctg
acaggaatcaaacctcaggagtttttcttccactgcatggctggaagagaaggactggtg
gacacggctgtgaagacgtctcgatcaggatacctgcagaggtgcatcataaagcatctg
gagggtttggtggtccagtatgacctgactgtgagggacagcgatgggtctgtggtccag
ttcttgtacggtgaggatgggctggacatacctaagactccgttcctgcagccaagacag
ttccccttcatagaagacaactacgaggtcatcaggcagtcccagggtctggacagggtt
ctgactcatttggacccacagagtgccagttgccacttcgcagccatccaacgctggaaa
gcaaagagaggagcggcgtgtcctcggacaggagcgttcttgctgttttctcagaagaag
ttggccaaactgagagaaactttaggagcagagtccaccactcacccagaccctgctgtg
gtgcagctggggaagcagtggcactccctggatgaggctggcagagcccggtactgcagg
aagtcctcccgctgcccggagccctcactgagccggttcaggcccgacatctgctttgga
tcagtttctgaaaacttccacaacatcacagaggaatacctccagaacagaaccagtgac
cgacaggattgcctggactcccacagccttcggcagctgctgcactacaagtggcagcga
gctctgtgtgacccgggggaggctgtgggtctgctggcagctcagtctataggcgagccc
tccacacagatgaccctcaacaccttccacttcgctggcagaggagagatgaacgtcacg
ctgggaatccctcgtctgagggagatcctgatggtggccagctcgaacatcaagaccccc
atgatgagcgtccctgtgctcaacaacaggaaggccctgaagagagcacgagcactgagg
aagaagctcagcagggtgtgcctggctgaggtcctgcagaaggtggacgtggttgagact
ttgcgaattgaaaagtatcacaagcatcggattttcaaagtaacctttaccttcctgcct
cctgaccgttaccatgacgacaagctgctatctcctcatcagatcctccgctacatggaa
acaagattcttccgtcttttcctggaagccatgaagaagcgtgtagccaaactggcctcc
atcgccgtggagacgaggaaggcctccctcagagacaaagaccctgacgtggaggagaca
gctgccacagcggagttagatgaaggaggagaggagggggagatagttgatgaccagggg
gacgaaggagatgccgacgcttcagatgccaagataaggagcaaacaggaggaggaggtg
gactacgagagcgaggatgaagatgagagtgatgatgctgaagataaggaggatggggag
gctcaggagaacccagagtccaactcggtggaggagtctcagcctgagcctgcaccagtg
atcgtggaaactaagaagaagggaccgtcagaggattccttggtccagacgagagtgaac
tcagtcctgcagatcaactcagctgtagagaaatattcctttgatcaggagcaggaactc
tggtgtgagattcagctggctctgcccgtaaacaaggtgcactttgacctgacctcagtt
ctgtcgacgctggcccagaacgccgtcatcatggagaccaagggtctgagccgctgccta
ctgagtgagaccacgacgaagaccggagacaaacagacggtcctgaacaccgagggagtc
aacatgcacgagatcttcaaatacagtgacatcctggacatcaacagactgtactccaat
gaagtccacgccatggccaacacgtacgggatcgaagtggccctgaaggtcatcgagaag
gagatcaaagatgtctttgctgtttacggtatcgaggtggaccccagacacctgtctctg
gtggcagactacatgtgcttcgaaggcgcgtacaagcctctaaaccgccacgccatccag
tccaactcgtctcctctgcagcagatgaccttcgagacgagctacaagttcctcaaacag
gccaccatgctggggtcgcatgatcagctggtgtcaccctcagcctgcctggtggttgga
aaggtggtcagaggaggaacgggtctgtttgaactgaaacaacctctgcagtag
DBGET
integrated database retrieval system
