Nematolebias whitei (Rio pearlfish): 119408861
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Entry
119408861 CDS
T08042
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03013
Nucleocytoplasmic transport
nwh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119408861 (upf3b)
03015 mRNA surveillance pathway
119408861 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nwh03019
]
119408861 (upf3b)
Messenger RNA biogenesis [BR:
nwh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119408861 (upf3b)
mRNA cycle factors
P-body specific factors
119408861 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
119408861
NCBI-ProteinID:
XP_037531642
LinkDB
All DBs
Position
4:complement(14122005..14125666)
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AA seq
455 aa
AA seq
DB search
MKEDKENTRPKEKRVEIKCEDGEKTERSKEKKEALTKIVIRRLPPSLTKEELEEQLQPLP
DVDYLEFFANDTSLYPHLFARAYISFKNQEDIVLFRDRFDGYVFIDHRGQEYPAIVEFAP
FQKIAKKRSKKKDSKCGTITEDPEYKKFLDCYNGDEEKLTSTTETLLEELEAKSKELEAK
KTTPLLDFLKNKQRIREEKKEERRRRELERKRLRDEERRKWREEERRKRKEAEKMKRLEK
PTEKDKDHVKDEPKIKLLKKPDRSDDAESEKPKEKAKKPEKPQKEDRSTGGSDLKRRQNT
EHREDRERKWDENVRKEFRERNVERDREREKERRQREKERIRRQDEDRRRRREQQDGENT
FRKHEEIKKERALEKKRSENMSTSHSEKMEKAAKDHKKDESGKRERLRNKDRPAIQLYQP
GARSRNRATAGGGEANSADRKPDTENKKVSEKGED
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaagacaaagaaaacactcgtccgaaagagaaaagagtggagataaagtgtgaa
gatggagagaaaacagagaggtccaaggaaaagaaggaggccttgacaaagattgtaatc
agacgattgccaccaagtttgactaaagaggagttagaagagcagttgcagcctcttcca
gatgtggattacttggagtttttcgccaacgacaccagcctttacccccatctcttcgca
agggcttacatcagttttaaaaatcaagaggacattgttcttttcagagatcggttcgat
ggatacgtattcatagaccacagaggacaggagtacccagccattgtggagtttgcacct
tttcagaaaatagccaagaaaagaagcaaaaagaaggactcaaaatgtggaacaattact
gaggaccccgaatataagaagtttcttgactgttacaacggagatgaagagaaactgact
tccacaacggaaactctgttagaggagctggaggctaaatctaaggaacttgaagctaaa
aagacaactcctttgctggacttcctgaagaataaacagagaataagggaggaaaagaag
gaggagaggagaaggagggagcttgagcgcaagcgtctgcgtgacgaagagcgtcgcaag
tggagagaggaggagaggaggaaacgaaaagaggctgagaaaatgaaaaggctcgagaaa
cccacagagaaagacaaggatcacgttaaggatgaaccaaaaatcaagctcctaaagaag
ccggacagatctgatgatgcagagtctgaaaaacccaaggagaaggccaagaaaccagag
aagccacaaaaagaagacagatcaacaggaggcagtgatctaaaaaggagacaaaacact
gaacacagggaggaccgtgagaggaaatgggatgaaaatgtgcggaaggagttcagggag
cgcaacgtagagcgagacagagagagggagaaggagcggcggcagagagagaaggagcgc
atcagacgtcaggacgaggacaggcggagaagaagggaacagcaggatggagagaacacc
ttcagaaagcatgaagaaattaaaaaagaaagagccttggagaagaagaggagtgaaaac
atgtcaacctctcactcggagaagatggagaaggcagccaaagaccataaaaaggatgag
agtggtaaaagagagcgcctacggaataaggaccgacccgccattcagttgtaccagccg
ggggccaggagccgcaaccgtgccacggcaggaggaggagaagccaattctgccgacagg
aaaccagataccgagaacaagaaagtgtctgaaaaaggagaagattga
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