Nematolebias whitei (Rio pearlfish): 119408946
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Entry
119408946 CDS
T08042
Symbol
si:ch211-114c17.1
Name
(RefSeq) pre-mRNA-processing factor 39
KO
K13217
pre-mRNA-processing factor 39
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nwh03041
]
119408946 (si:ch211-114c17.1)
Spliceosome [BR:
nwh03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
119408946 (si:ch211-114c17.1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
TPR_19
TPR_11
UTP6_C
TPR_12
HrpB1_HrpK
TPR_21
HAT
GAT
Motif
Other DBs
NCBI-GeneID:
119408946
NCBI-ProteinID:
XP_037531735
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All DBs
Position
4:17232129..17238628
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AA seq
731 aa
AA seq
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MAAEGSEEEMSGNVELEEASAMNVSEVPPPPPPEMPENGSAVVAPESPAGHDSESYSVAQ
TTEHEEGGTLPADFERLWKAAHDNPQDFTSWTDLLQYCEQERHIEASRKALEAFLARYPL
CYGYWKKYVDLERRSGNNNKAEEVCIWGLKGIPLSIDLWIHYINLLLGTLDMNLPDSPKR
IRSVFEDAVAAAGLDFHSDRLWDLYIEWEKEQGNAKNAAAVLDRVLKVPTQLYSTHYDKF
KEHLNNNPPKDVLSSEEFEELKTLCRQSQKAERAEQAQEVDEERPPGEELPATPEGTDSE
ELIQKIREQVLLRRDKVYEANEGEVRKRWNFEDAIKRPYFHVKPLDRLQLQAWHSYLDWE
ISELNRDTKNSTQEPTQEATEESKITAQNQETSARDAVAHSDHRVRILFERCLIACALYE
DFWMRYVQYLEPQSVDEARAVYKRACEIHLSNKPNIHMQWATFEERHGDLTQARRVLEAL
EKSLPGLAVVRLRRATLERRAGQLEQSEALLTEAVAESKEKPTLHAFYSIKLARLLLKVG
RNPSQARRVLQEALEISPDNDKLHLSLLELEASGDPWASADAVRECVTRALAAPLTSHTK
LLLSQRGLQFAEDYSSSIQSLLTVYEAHQKLLDELRGTKREAENGAEDPQKMLKSDDDAA
AATSEQAPPTTPQVPITTPPPSMVGTDTSAQAGYGAYSSWYQQPQYGSYGSYGSYGYQNP
WNYNQSYYPPS
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggagggttctgaggaggagatgagcggcaacgtagagctcgaagaggcttct
gccatgaatgtctctgaggttccaccgccacctccacctgagatgccagagaacggcagt
gcagttgtggctcctgagtctcctgcaggtcatgactccgagtcctactctgtggctcag
actacagagcacgaggagggggggacactacctgcggattttgaacgtctgtggaaggct
gcacatgacaatcctcaagactttaccagctggacggatctgctgcaatactgcgaacaa
gagagacacattgaagcttcacgcaaagcactagaggcctttcttgctcgttaccctctt
tgctatggttactggaaaaaatatgttgaccttgagcgccgctctgggaacaacaataaa
gcagaggaggtgtgtatttggggtcttaaggggattcctctaagcatagatctgtggatc
cactacattaatctgctactggggactctggacatgaacctgcctgattcacccaagcgg
atacgcagtgtgttcgaggatgcagttgcagcagctggtctagacttccattcagatcga
ctttgggatctctacattgagtgggaaaaggagcaagggaatgcaaagaacgcagcagct
gtcctggacagagtcctcaaagtccccacccagctttacagcacccactatgacaaattt
aaagaacacttgaacaacaatccacccaaagatgtgctttcctctgaggagttcgaggag
ctgaagacattatgccgacagagtcagaaggctgagcgtgctgaacaggctcaggaggtt
gacgaggagaggccaccgggggaggaactgcctgccacacctgagggcacagactcagag
gaactaatacagaaaataagggaacaggtattacttcgtagagacaaagtgtacgaggcc
aacgagggagaagttcgtaagaggtggaactttgaagatgctatcaagcggccatatttt
cacgtcaagccactggatcgcctccagcttcaggcctggcactcttacctggactgggag
atctctgagctaaacagggacaccaaaaattctacacaagaaccaacacaggaagctaca
gaggaatccaagatcacagcccagaatcaggaaacgtcagcgcgtgatgcggttgcccat
agcgaccacagagttcgcatcctgtttgagcgctgcctgatcgcctgtgctctgtatgag
gacttctggatgaggtatgttcagtacctggagccgcagagcgtcgatgaggcccgagct
gtttacaaacgagcctgtgagatccacctttccaacaaacccaatattcatatgcagtgg
gccaccttcgaggagaggcacggtgacctaactcaggctcggcgagtgctggaggccctg
gagaagagccttcccggtttggcggttgtacgtctccgcagggccaccttagagagacgg
gctggccagctggagcaatcggaggccctgctgacggaggcggtagcagaatccaaagaa
aagcccacgttacacgctttctactccatcaagctggcccgtctgttgctgaaagtgggc
agaaaccccagccaagcccgcagagttttgcaggaagcactggagattagtccggataat
gacaaactgcacttgagcctgttggagctggaggcttctggcgacccctgggcctcagct
gacgctgtgcgggaatgcgtgacgcgagctctggcagctcctctcacctcacacaccaag
ttgcttttatcacagagaggccttcagtttgccgaggattacagcagctccatccagagt
ttgctgactgtgtacgaggcacaccagaaactgctggacgagctgcgaggaacaaagagg
gaagcagagaatggagccgaggatccacagaagatgctcaaaagtgacgatgacgctgct
gctgctacgtccgaacaagccccacccaccacgccgcaagttcccatcaccacgccgcct
ccgtcgatggtgggcaccgacacgagcgcacaggccggatacggagcgtacagcagctgg
tatcagcaacctcagtacggcagctatggcagctacgggagctacggctaccagaacccc
tggaactacaaccagtcttattatccacccagttaa
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