Nematolebias whitei (Rio pearlfish): 119409050
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Entry
119409050 CDS
T08042
Symbol
pcdh20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
119409050 (pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
nwh01009
]
119409050 (pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
nwh04515
]
119409050 (pcdh20)
Protein phosphatases and associated proteins [BR:
nwh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
119409050 (pcdh20)
Cell adhesion molecules [BR:
nwh04515
]
Cadherins
Protocadherins
119409050 (pcdh20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Sde0182_C
Comm
Motif
Other DBs
NCBI-GeneID:
119409050
NCBI-ProteinID:
XP_037531839
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Position
4:complement(25738697..25741782)
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AA seq
854 aa
AA seq
DB search
MGLPYNMNWAGLLQILLVIIHTSQVTCGSIQFSVQEERKPDTLVGSLSKHFQPPYQLLTQ
EYLWMDEHTGNFYTNERRIDRESLCPEETKAEGCFVLHNAIVGPSGDLVQFPVIIEDIND
NAPHFQNSEIRLKVSEDVAVGSSFVLDDLAQDADTGHNGQLSYHLQGSGGDFSIKAKEDE
LLIMLVVQTALDREIRDLYQMQLVATDCGTHPLNTSVVLTVTVTDVNDNCPSFGPDSPRS
TTIPGDSPKNMVVTRVIATDPDTGPNGAIVYSLSPQVSERAKKLLTLDSRTGYIRLKQDL
QNNNSEELVLKVLASGPHCPPADTWVTISVLPKATQDLTIKIGFIAEHHNQTMVLPENQP
PTVLAVLELEGDSSSKGSSLAIEGDMPFSLSPQSGKYLLSTSKPLDYEIQSEYHISVVVQ
GISSESSVISLSRQVIRVMVEDVNDNAPHFLQSHYQLEVEENNQPGITLLQVSASDADSG
NKGRVTYRLHEYTSAIFTIDSDTGQMSVLAPLDREQQQEYKLTVFARDSGSPPLESQATI
IIRVLDQNDNAPVFSTPHFIFFIPENAPPFTQVGRIEVIDLDEGENGSTELRLGNSSTPF
VVDNTQRTLRTTTSLDRETVDHYELYVLVSDSGYPVALTSTAIVTVFVEDINDNQPKVIL
PSSNSSCLALSPSTLVGSTITKIYAIDEDSGLNSEITYSVIAPGPAQQTNPFQVDSRSGD
ITLNHQLSQKDMGMHHLFIVVRDNGKPTPLYTTVWVNLLVNESTEHCTLDRAPTWTGTSD
LVQSPSMAPICEVKPVRSDLYMYVGMILMLVSLVLFLVTLCLYLKYKSLQKPKREYIKEN
EIPLRLKDKYYSDE
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atgggactcccttataatatgaactgggctggactcctgcagatcttgctggttataatc
cacaccagtcaggtcacatgtggatctatccagttttctgttcaagaagaacggaagcct
gatactctggtcggatcgctgagcaaacatttccagcctccataccagctcctgacccag
gagtacctgtggatggacgaacacactgggaatttttatactaatgagcgcaggatagat
cgtgaaagcctctgccctgaggagacaaaagctgaaggatgctttgttctgcacaatgct
attgtgggaccctcaggagaccttgtacagttccctgtgataatagaggacatcaatgac
aatgcaccacattttcaaaacagtgaaatacgcctgaaggtgtctgaggatgtagctgta
gggagcagcttcgtcctagatgacctggctcaggacgcagataccggacataacggacaa
ctaagttaccatctgcaagggtctggaggagatttctccataaaggctaaagaagatgaa
cttttaataatgctggttgtacaaacagcactggatagggaaattcgggacctgtatcag
atgcagctggtggccactgattgtggtacacaccctttgaatacttcagtggttttaaca
gttacagtgacagatgttaatgacaactgtccaagctttggtcctgacagtccacgcagt
accaccattccaggagactctccaaagaatatggtggtaactcgggttatcgccacagac
ccagacacaggtccaaacggtgccattgtttattcactaagcccccaggtctctgaaaga
gccaagaagcttttaacccttgatagtcgcactgggtacatcagattaaaacaagacctc
cagaacaacaattcagaggagctggtgttaaaagtgttagccagcggccctcactgcccc
ccagcagacacttgggtaaccatatctgtgctccccaaggcaacccaagatctcacaatc
aagatcggattcatagctgagcatcacaatcagactatggtgttaccagagaaccagccc
cccactgtcttagctgttttagagctggagggtgacagtagctctaaaggctcatctctt
gccattgagggtgacatgcctttctctttgagcccacaaagtggcaaatatctgctttct
acttcaaagcctctagactatgagatacaaagtgagtatcacatttcagtggtagtgcaa
gggatctcatctgaaagctctgtgatttctctgtctaggcaagtgatccgagtgatggtg
gaggacgtcaatgacaatgctccacacttcctccagtctcactaccagctggaggtggag
gagaacaaccaacctggaataacgctgctgcaggtgtcagcttctgatgcagacagtggc
aacaaaggcagggtgacatacaggctgcacgaatacacatctgccatcttcaccattgac
tcagacacaggtcagatgtctgtgttggctcctctggatagggaacagcagcaagaatac
aagctcactgtgtttgctcgagatagtggctctcctccactggagtcccaagccactata
attattcgtgttctggaccagaatgacaatgcacctgttttttctacccctcacttcatc
ttcttcatcccagagaacgctccaccgtttacccaggtgggaaggatagaggtgatagac
ctagatgaaggagaaaacgggagcacagaactgcgacttggaaacagcagcacacctttt
gtcgtggataacacccaaaggacactgaggaccaccaccagcctggaccgtgaaacagta
gaccattatgaactttacgtgttggttagtgacagtggatacccagtcgctttaacttcc
actgccatagtgactgtctttgtggaggacatcaatgacaaccagccaaaagtgattcta
cccagcagcaactcctcatgtttggccctctccccaagtaccctggtagggtcaacgatt
acaaaaatctacgccatcgacgaagactctgggttaaattctgagatcacgtattctgtc
atcgcaccagggccagcacaacaaaccaaccccttccaggtagactcaagatcgggtgac
atcaccctaaatcatcagctttcacaaaaagacatggggatgcatcatctcttcattgta
gtgagagacaacgggaagccaactccactttatacaactgtttgggttaatctgctggtt
aacgaaagcacagagcactgcactttggacagagcacctacatggacggggacatctgat
ttggttcaaagtccctcaatggcccccatctgtgaggtgaaacctgttcgatccgatctc
tacatgtatgtcggcatgattttgatgctggtatccttagttttgtttctggtaacattg
tgtttatatttgaaatataaaagtctacaaaaacccaagagggaatacataaaagagaat
gagattccactcaggctcaaggacaaatattattctgatgaatga
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