Nematolebias whitei (Rio pearlfish): 119409102
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Entry
119409102 CDS
T08042
Symbol
sh3tc2
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 2
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nwh04131
]
119409102 (sh3tc2)
Membrane trafficking [BR:
nwh04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
119409102 (sh3tc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_8
SH3_9
TPR_2
TPR_MalT
SH3_2
SH3_1
TPR_1
SNAP
TPR_10
TPR_7
HEAT_Nup120
Motif
Other DBs
NCBI-GeneID:
119409102
NCBI-ProteinID:
XP_037531895
LinkDB
All DBs
Position
4:complement(30095323..30123852)
Genome browser
AA seq
1541 aa
AA seq
DB search
MALISGSCRLLGQMASCCCRPLLSCSCCQPLIKVCLSSFTDISPAELDALWREPPYTLGG
ANEHFLGNDNMTQGEEEDSPVADPGEEEENESYWRKKDAFLRGSIVSVGDKHSSEIVLLF
TGRRRSCDDPDHTLQEALRTQLRVVESNSKDVAQLFKDLSARLVSVYAEKDSFVLTFKTV
EEIWKFSTYLSLGYVARCLENFLCDQSFWLDPELLSELEINVTVDEEHLATLYLGLLLQE
GSFFAKALFTGSEQDEDDEEKLSFKKNDLLMVRDTRQDSMWEGTMLSTGNHGLVPVSAMQ
PLPYPFYQWFLRKYPGHAGCSPAEKELFEHSIVSGSCVAVVDYCPAAPDELQLNLGDIVD
IQGLLLRGVDMFIGKHSSTEHIGFVHRAHVKPLNITPLDGQLVFLTEEEKTSLAQVNLCS
TEPSDSSMLERLFSSDISSVYRLDRLDESDFMYILGHPKHDHTGFLSTRQSLMSERSEGT
TIYQSSPHASITSPRISHNPLPREGERLSFSMDETFRGLDEFHEDPSFFLEENSWDGEES
ELSDPTLTLLNQEHFQEDFLPLYDLQCSFLWMTFSGKNEKELSGHLESVRECAKRMGMHW
AHRRACFVLGRLCARKLKFSQARVYYEEAMSVRVDGFSDIPLLVTLFTNLTAIYLKQRMN
DKLPHILEKASALLLCLPCHTFTSEDEVELLKLLLRRSVILGDKYLEARVCYLISSLFLL
RRKTDDALPFVERLQFLSATLSTSEGDPIAPVDLNWLLSWLYHQKYMPYLALASLSLDSR
QDHSLSDAFLKIELFIRNSVRLNPSWKEGTSILPAQIVVYLHQALVIAEKGDDMKMRRDL
CLGLASVYQQYGALYKAVNCAQQAVETGSHINEEDGFEASVLLGWLMVLTGQAERALSIL
EPLLTSLQSTDSPTQRGVIHNLLALSLRHQGQIRKAGWHLHSALVISRESGNQRNQALAL
ANLGCLALDAGAFLVAERFLVRSLCLFLDLWESPTDEEHVQTYLWLGRSYKDRGRNQDIR
TCYEMGLLIALHAKNLHSQMVVVKLLSRLYADMLLYKQSIVYYEHCVFVSRELKDKRLEG
ECLEKLSSFYLSLNTEKSSRKSLDYTKQSLRISIDLGKREEESETWLQVGRIYYLIQEDE
LADMYLQAAVKTALRMNNPHFAMSIYEEAGDVYFKGQRNRKASLLFYRDGSLPFARSIKD
IHSEFRVLSKLTELLMNQGEQDEALQYATLAVQIANQTGVRENERTAYHRLATIYYSLQQ
YEMAENYYLKSLSLCPPALHHPKEAQYYTKLYCRLGNLTLYELKDAFDAVGYFQLALAAA
LEDQTNPNALYVVFMKLAEIHCNHLPDAHLCRAYRDRAQSLKRVLAFMGNSAAQTENVDD
ADRQPGQRREKCLDADMGYAERCQDKSGHRLCTTNTNSEERSADVNRGEDASHKSQNHGP
ADTDSQSYSDSIQTGSFDMAKEHISDSSSITDTYQNPTDGKDSEMDSDHSMPSQIPANHI
SEVTGHTDTRDTDSDTQGSQNTPTKDTDSDATQTESEEHKL
NT seq
4626 nt
NT seq
+upstream
nt +downstream
nt
atggcattgatctccgggagctgccgactcctgggtcagatggcgtcttgttgctgcaga
ccgctcctcagctgctcctgctgccaaccgctcatcaaagtctgcctctcctccttcaca
gacatctctcctgctgagctagacgctctttggagggaaccaccctacacacttggggga
gcaaatgaacacttcttaggaaacgacaacatgactcaaggtgaggaagaggacagtcca
gtagcagacccaggtgaagaagaagaaaatgaaagctactggaggaagaaagatgccttc
cttcgaggaagtatcgtgtcagtaggagataaacattcctcagaaatcgtgctcctgttt
actggacggaggcgctcctgtgatgatcccgaccacaccctgcaggaggctctgcgcaca
caactccgagtggtggagagcaacagcaaagatgtcgcacagctctttaaagacttgtct
gctcgtctcgtctctgtttatgcagagaaggatagctttgtgctcacattcaagactgtg
gaggagatctggaagttttcaacgtacctttcattaggttatgtggctcgttgcttggag
aacttcttgtgtgatcagtcgttctggctggacccagaactgctcagtgagttggagatc
aatgtgacagtggacgaggaacatctggccaccctctacctgggacttcttctacaagag
gggtccttcttcgccaaggctctgttcactggaagtgagcaggatgaagacgatgaagag
aagctgtcgttcaaaaagaatgacctgcttatggtgcgagacaccaggcaggacagcatg
tgggagggcaccatgctctccacaggaaaccacggcctggtgcccgtcagcgccatgcag
ccgctgccttaccccttctatcagtggttcctaaggaagtatccaggccatgcaggatgc
tcaccagcagaaaaggaactgttcgaacattcgatcgtgagtggttcgtgtgtagctgta
gttgactactgtccagcagcaccagatgagctccagctgaacctgggggacattgtggac
atccagggtcttctgctccgaggagtggacatgtttattgggaaacattcatccacagaa
cacattggttttgttcacagagctcatgtcaaacctctaaacatcacacccttagatgga
caactggtttttctgactgaggaggagaagaccagtctggctcaggttaacctgtgcagc
acagagccaagtgacagcagcatgctggaaagacttttctcctctgatatcagctccgtg
tacaggctagatcgattggatgagtcagacttcatgtacatcctgggtcatccaaaacac
gatcatacaggctttttgagcactcgacagagcctcatgtccgaaagaagtgaggggaca
accatctaccagtcctctcctcatgcctccatcacctctccccgcatctcccacaatcct
ctgccacgagagggagagcgcttatctttcagtatggatgagacgttcagaggtctggac
gagttccatgaagatccatctttcttcctagaagagaacagctgggacggggaagagtct
gagctcagtgaccccacactgactctgctcaaccaggagcacttccaggaggatttcctg
cccctgtatgacctacagtgttctttcctgtggatgaccttcagcggtaagaatgagaag
gagctgtcaggacatcttgagagtgtcagggagtgcgccaagaggatgggcatgcactgg
gcccatcggcgtgcgtgttttgtactgggtagactgtgtgccaggaagctgaagttctcc
caggctcgtgtatactatgaagaagctatgagcgttcgtgttgatggtttttctgacatt
ccactccttgtgactctcttcaccaacctcactgccatctacttgaagcaacgtatgaat
gacaagctgccccacattctggagaaggccagtgctctgctcctctgccttccctgtcac
accttcacatccgaagatgaagtagaactgctgaagctgctcctgaggagatcagtcatc
ttaggtgacaaatacttggaggctcgcgtctgctacctcatctccagcctcttcctgctc
cggaggaagactgatgatgctcttccctttgttgaacgactccagttcctatcagcgaca
ctgtcaacctctgagggggatcctattgctcctgtagatcttaactggctcttgagctgg
ctatatcatcaaaaatacatgccttacttagctttagcctctcttagcctagactcaagg
caagaccattcactcagtgatgcctttttgaagattgagttgttcatcagaaactctgtt
cgtctgaacccaagctggaaggaaggaacttccatccttccagctcagattgtggtttac
ctgcatcaggccctggtgatagctgagaagggggacgacatgaagatgcgaagggacttg
tgtttgggcctggcctcggtttaccaacagtatggtgcactttataaggcagtgaactgt
gcccaacaagctgtggaaacagggagccacatcaatgaggaggatggctttgaggcctct
gtgctccttggatggctgatggtgttgacgggccaggctgagagagccctgagtattctt
gaaccactgctaacatccttgcagagcacagacagtcctactcagcgaggagtgatccat
aacctcttggctttgagcctaaggcatcagggccaaattcgaaaggcaggctggcatctc
cactctgccttggtgatctctagagaaagtggaaaccaaagaaatcaggccctggcactg
gccaacctgggctgtctggcactggatgctggggcatttttggttgctgaacgtttcctg
gtcagatctttgtgcctttttctggatctctgggagagccccacagacgaggagcatgtt
cagacctacctttggcttggacgaagctacaaggacagaggaaggaatcaggacatcagg
acatgttatgaaatggggctgttaattgcactacatgccaaaaacttgcacagtcaaatg
gtagtggtcaagcttttgagtcggctgtatgccgacatgctgctttacaaacaaagtatt
gtttactatgagcactgcgtgttcgtgtccagagagctgaaggacaaaagactggaggga
gagtgtctggaaaaactcagcagcttctatctctctctcaacacagaaaaatcatctcgt
aagtctctagactacaccaagcagagcctgaggatttctattgatctgggcaagagagag
gaagagtcagagacctggctgcaggtgggacgcatctactacctgatccaggaggacgaa
ctggctgacatgtacctgcaggcagcagtgaagacagccctgaggatgaataatcctcat
tttgctatgagcatctatgaggaggcaggagatgtttacttcaaaggtcagagaaaccga
aaggcttcactgcttttctacagagatggaagtttgccatttgcacgaagcatcaaggac
atccactcagagtttcgtgtgttgagtaaactgacagagctgttgatgaaccaaggagag
caggacgaggctctgcagtacgctactttggctgttcagattgctaaccaaacaggagtg
cgtgagaatgagaggactgcctatcatcggctggctacaatttactacagcctgcagcag
tacgagatggcagaaaactactacttgaagtctctgtctctgtgtccgcctgctctgcat
caccccaaggaggctcagtactacactaaactctactgcagattgggaaaccttaccctc
tatgaactcaaggatgcttttgatgcagtgggctacttccagttggctctggcagctgct
cttgaggaccaaacaaatcccaacgctctgtatgtggtgttcatgaagttggctgagatc
cattgcaaccacttgcccgatgctcatttgtgccgagcttacagagacagagctcagagt
ctgaagagagttttggctttcatgggtaattctgctgctcaaacggagaacgtggacgat
gcagacagacaacctggccaaaggagggaaaagtgcttggatgctgatatgggatacgct
gagaggtgtcaagacaagtcaggtcatagactttgtacaaccaacactaactcagaggaa
agatctgcagacgtgaatcgtggagaggatgccagtcacaagagtcagaatcatggtcct
gctgacacagacagtcagtcctatagcgacagcatccaaactgggtcttttgacatggct
aaggagcacatctcggactccagcagcatcactgacacctatcagaacccaacagatggg
aaagactcagagatggattctgaccacagcatgcccagtcaaatacctgccaatcacata
agtgaggttacaggacacacagataccagagacactgattctgacactcagggaagtcaa
aacacccccactaaagacacagattctgatgcgactcaaacagaatccgaggaacataaa
ctttga
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integrated database retrieval system
