Nematolebias whitei (Rio pearlfish): 119409178
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Entry
119409178 CDS
T08042
Symbol
syvn1
Name
(RefSeq) E3 ubiquitin-protein ligase synoviolin
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh04120
Ubiquitin mediated proteolysis
nwh04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
119409178 (syvn1)
04120 Ubiquitin mediated proteolysis
119409178 (syvn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nwh04121
]
119409178 (syvn1)
Enzymes [BR:
nwh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119409178 (syvn1)
Ubiquitin system [BR:
nwh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
119409178 (syvn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-C3HC4
zf-C3HC4_2
zf-rbx1
zf-RING_UBOX
zf-C3HC4_3
zf-RING_16
zf-RING_11
zf-RING_5
zf-ANAPC11
zf_RING_Vps8_fungal
zf-RING-like
zf-RING_Vps41
zf-Nse
FANCL_C
Motif
Other DBs
NCBI-GeneID:
119409178
NCBI-ProteinID:
XP_037531966
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All DBs
Position
4:53108088..53178230
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AA seq
636 aa
AA seq
DB search
MVRAALVTATSLALTGAVVAHAYLLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKF
MRKVFFGQLRAAEMEHLIERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLA
EDRVDFMERSPNISWVFHLRVLSLLGMLALMDFLFVNHACHSIITRGASVQLVFGFEYAI
LLTMVLTTFIKYILHTVDLQSENPWDNKAVYMLYTELFTGFIKVLLYIAFMTIMIKVHTF
PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEDLQASDNVCIICREEMVT
GAKKLPCNHIFHSSCLRSWFQRQQTCPTCRMDVLRATNNNQTPVPPAQAPPPAPAAPANA
PAAALAPNVAPGMLPGFPPGIFPFWGPFPAVPPPAAAAPAPGGADAPQSSTEATQTTGTS
QPTSSTTTDAATPSSPAAPGSALPAFPFSFPPPPFPTAPWLPMPPPPPFLSSMPPPPPSL
SQLSDEELRELEAEGRRGLEARLQCLQNIHTLLDAAMLNIHHYLSTVATLTPPRPESNAG
QTSGRAHTASCCTAATNTEDTTMSDEASGATASSQPADSTSCDSTSRASDTERLKNVDEG
VPEDEGSEPSAAELRRRRLCKLEAASSSSSSPPLDN
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atggtacgagccgccttggtgaccgccaccagtctggcgctgactggagctgtggtggct
cacgcatacttgctcaagcaccagttctaccccactgtggtgtacctcaccaagagcagc
cccagcatggcggtgttgtacattcaggcctttgttctggtgtttcttttgggaaagttt
atgagaaaagtcttttttgggcagctgagagctgcagagatggagcatctgatcgagcgc
tcctggtacgcagtgacggagacgtgcctggccttcactgtgttcagagatgatttctcc
cccagatttgtcgccctctttaccctcctgctcttcttgaagtgcttccactggctggct
gaggatcgggtggactttatggagcgaagtccgaacatatcatgggtttttcacctaagg
gttttatctctcctaggaatgctggcactcatggactttttgtttgtcaaccacgcctgt
cacagcatcattactcggggagcttcagttcagctggtttttggatttgagtatgccatc
ttgctgaccatggtcctgacgacctttatcaagtacattctgcacactgttgacctgcag
agtgagaatccctgggacaacaaggccgtctacatgctctatacagagctcttcacaggg
ttcatcaaagttctcctgtacattgccttcatgacaatcatgataaaggtccacaccttc
cctctgttcgccattcgccccatgtatttggctatgaggcagtttaaaaaagctgtaaca
gatgctataatgtctcggagagctatccgtaacatgaacacactatatcctgatgctact
cctgaagacctgcaggcctcggacaatgtttgcatcatttgtcgagaggaaatggtcacc
ggagccaagaaattgccttgtaatcacattttccactccagctgcctccgctcctggttc
cagagacagcagacatgtccaacctgtcgtatggacgtacttagagccaccaacaacaat
cagactccagttccacctgcacaggctccgccccctgcccccgcagcccccgccaatgct
ccagcagctgctctggccccaaatgtagctccaggcatgctgcctggctttcctcctggc
atcttccctttttggggtccatttcctgcagtgcccccccctgctgcagcagctccagct
cctggtggcgctgacgctccgcagagcagcacagaagcaacacagactactggcaccagt
cagcccacgtcttctactaccacagacgcagccacgccgtcgtccccagcagctccagga
tcagcactcccagcattccccttctcattcccacctcctccctttcccactgcaccgtgg
ctgcccatgccaccgcctcctcccttcctgtcatcaatgcctcctcctcctccatctctg
tcgcagctgtcggatgaggagctgagggagttggaggcagaagggcggcggggcctggag
gccaggctgcagtgtctgcagaacattcacaccctgctggacgccgccatgctcaacatc
caccactacctcagcaccgtggctacactcactcctcctcggcctgagagcaacgcggga
caaacgagtggaagagcccacactgcttcctgttgtacagctgccaccaacacggaggac
acgaccatgtctgatgaggcgagcggagccacggcctcctctcagcccgctgactccact
tcctgcgactccacttcccgtgcttcagacacagaaagactaaagaacgtggacgaagga
gtgcccgaggacgagggcagcgagccgagtgctgctgagctgaggcggcgccgtctttgc
aagctagaggcagcatcgtcgtcatcgtcgtcccctcctctggacaactga
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