Nematolebias whitei (Rio pearlfish): 119409391
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Entry
119409391 CDS
T08042
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119409391 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nwh03019
]
119409391 (cnot3a)
Messenger RNA biogenesis [BR:
nwh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119409391 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119409391 (cnot3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5646
Motif
Other DBs
NCBI-GeneID:
119409391
NCBI-ProteinID:
XP_037532198
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Position
5:complement(16376994..16386840)
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AA seq
909 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQRE
KEETGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIDELKRLIERHRFHI
RMLETILRMLDNDSVPVDAIQKIKDDVEYYIDSSQDLDFEENEFLYDDLDLEDIPAALVA
TSPSGQGNMEDEMYLHSSSTPTSTTSSSPIPPSPATCTAENSEDDKKRGRSTDSEVSQSP
VKNGAPSLQSSFSSSTTSGSSSSSSLVSMASVVGGILTIPTSSTLIGSFSSAVQQHQHQS
AQQQQQSQQSNQPQQQQQQQPPQTKPSVPSNNTPSPPSNPLLPTSTVPSLTTPSTPTSSA
PNSQPISGPTAASSLGLGLDLRKGGITGTSSANQMSSLGLTGHTTPLNTMAGLISGSTSA
LYAHAAASGGLGLSCTTQSSILTESSTSIPTSGSSGITTNGTGSGLSLLGSNQAHNSLSG
SILSLVPGQGVAPATSQMPPISASTTAGVVGLMVGNGGSVGGVGPVGVNAAPARPPSGLK
QNGSTSYSAVVAESSTELSLSTPNQSQNSQSSSLSSSTSQPMDNGPSLISSITLPPSSPS
PSFSDSTPSGGSLLNGPHSYPQASEGLEAPKGLSSLKVMAERAALGSGLDGEIPNLHVTE
RGLNDIFSGSSAAPGTPAAPQPSVSEVSIPPLLGVCPLGPTPLPKEQLYQQAMQDSVWNH
MPHPSDSERIRQYLMRNPCPTLPYHHQVPTHHSDTIEFYQRLSTETLFFIFYYLEGTKAQ
YLSAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEY
RYLEDRDLQ
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaagagaaaactacaaggtgaaattgatagatgtttgaaaaaagtagctgag
ggtgtagagcagtttgaagatatttggcaaaagctccacaatgcagccaatgcaaaccag
aaggaaaaatacgaggctgacctcaagaaagagattaaaaaactacaacgattgagagat
caaattaaaacgtgggtggcctcaaacgaaatcaaagacaaaaggcagctagttgagaac
cgcaaacttatagagacgcaaatggaacggttcaaagtggtggagcgtgaaacaaaaaca
aaagcatactctaaagaaggcttggggcttgctcagaaggtggatccagctcagagggaa
aaggaagagacgggacagtggctaacaaatacaatagacacactaaatatgcaggtggat
cagtttgagagtgaggtagaatctctttcagtccagacacgaaaaaagaaaggcgataag
gagaaacaagaccgcatcgatgagctcaagcggttgattgagcggcatagattccacatt
cgcatgttagagaccattttacgaatgctggacaatgattctgtgccggtggatgcaata
caaaagatcaaggatgatgttgagtactacattgattcctctcaagacctggattttgag
gagaatgagttcctttatgacgacttagacctggaagacatccctgcagcgttagttgca
acttctccgtcaggtcagggcaacatggaagatgaaatgtacctccattcgagcagcact
cccacgtccaccacatcttcttcaccaatccctccatccccagctacttgcaccgcagag
aactcagaggacgataagaaaaggggacggtcgacagacagtgaagttagtcagtcgcca
gtgaagaatggcgccccatctttacaatcttccttttcttcttccaccacctctgggtct
tcttcatcctcttcccttgtgtccatggcaagtgttgttggaggcattctcacgattccc
acgagcagtactctcataggaagctttagtagcgcagtacaacaacatcagcatcagtct
gcacaacagcagcaacaatctcagcaatcaaaccaaccacagcagcagcagcaacaacag
ccacctcagactaaaccatccgttccctcgaacaacacccccagcccacccagcaaccct
cttctcccaacatccactgtcccttctttaaccacacccagcacgcccacttcatcagct
cccaactctcaacccatctccgggcccactgccgcatccagtttggggctggggctggat
ttaagaaaaggtggcataacggggaccagcagtgccaaccaaatgtcaagtttaggcttg
actggccacaccactcctttaaacacaatggcaggcctcatttcagggtccacatctgcc
ctttatgctcatgcagcagcatctggaggtttgggcctgagctgcacaacacagtccagc
attttaacagagagcagcacttccatccccacctcagggtcaagtggaatcaccaccaat
ggcacggggtcagggcttagtttgctaggttccaaccaggcacacaattctctgagtggg
agtattttgagtttggtccctgggcagggcgtggcccctgctacctctcagatgccccca
atttctgccagcaccacagccggagtagttggtttgatggttggcaacggaggaagtgtt
ggtggggttggaccagtaggagtgaatgctgctcctgctagaccaccaagtggactgaag
caaaatggaagcacaagttacagtgctgtagtggcagagagctccacagaattgtctctt
agcacgccaaaccagtcacaaaacagccaatcctcatccctcagctcctcaaccagccag
ccgatggacaacggtcccagtttaatcagctccatcaccctgccccccagttctccatcc
ccctcattctcagacagtacacccagtggagggagtcttctgaacgggccccactcttat
ccacaggcctctgaaggccttgaggctcctaaaggcctcagttccctgaaggtgatggct
gagagagcagcactcggatcgggtctagacggagagattcccaaccttcatgtgaccgag
agaggtctgaacgatatcttctctggttcgtcagcagcgcctggtacgcccgctgctcct
cagccgtccgtgtcggaggtcagtatccctccgttactcggggtctgtccactgggtcca
acccctctccccaaagagcagctgtaccagcaggcgatgcaggactctgtgtggaaccac
atgcctcacccgtctgactctgagaggatcaggcaatacctgatgaggaatccatgtccc
actttgccctaccaccatcaagtaccaacccaccactctgacaccatagagttctaccag
agactgtccacagaaacgctcttcttcatcttctactacctggagggcactaaggctcag
tatttgtctgccaaggctctaaagaaacaatcatggaggtttcataccaagtacatgatg
tggtttcagaggcacgaggagcccaagactatcactgatgagtttgaacagggcacttac
atttactttgactatgagaaatggggccagaggaagaaggaggggttcaccttcgagtac
aggtacctcgaagacagagacttgcagtga
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