Nematolebias whitei (Rio pearlfish): 119409415
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Entry
119409415 CDS
T08042
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03020
RNA polymerase
nwh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
119409415 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
119409415 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nwh03021
]
119409415 (polr2a)
03400 DNA repair and recombination proteins [BR:
nwh03400
]
119409415 (polr2a)
Enzymes [BR:
nwh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
119409415 (polr2a)
Transcription machinery [BR:
nwh03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
119409415 (polr2a)
DNA repair and recombination proteins [BR:
nwh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
119409415 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
119409415
NCBI-ProteinID:
XP_037532230
LinkDB
All DBs
Position
1:complement(29528776..29547580)
Genome browser
AA seq
1966 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGVISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKILRCVCFFCSKLLVDSN
NPKIKEILVKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEPQETEEDITKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDIILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETKAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAILKPRPLWTGKQVFSLIIPGHINV
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGENVE
FQNVATLKPSHKAFEKKFKFDCTNERALRRILQEDVVKDVQTNAHVQGVLEREFEKMKED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVEGVHDLSKKLII
VNGDDPLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NNDESKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TDDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcacgatcaagagagttcag
ttcggcgtcatcagcccagatgaactcaagcggatgtcggtgacagaagggggaatcaag
taccccgaaaccacagaaggtggacgtcctaaacttggtggccttatggatccaaggcaa
ggggttatagaacgcagcgggaggtgtcaaacgtgtgcgggcaacatgacagaatgtcca
ggccactttgggcacatagagctggccaaaccagttttccacgtcggatttataacgaag
atcatgaagattctccgctgcgtctgcttcttctgctccaagctgttggtggactcgaac
aatcccaagatcaaggagatcctggtgaaatcgaaaggacagcccaggaagcgtttaacc
cacgtttacgagctgtgcaaaggcaaaaacatttgtgagggcggcgaggaaatggacaac
aaatttggaatggagccacaggagacagaggaggatatcaccaaggaaaagggccacggt
ggctgcggccgctaccagccccgcatcagacgctcgggcttggagctgtacgccgagtgg
aagcacgtaaacgaggactcacaggaaaagaagatcctgctgagccccgagcgcgtgcat
gaaatcttcaaacgcatctcggacgaggaagacatcatcttgggtatggatcccaagttt
gcccgaccggagtggatgattgtcaccgtgttgcctgtgcctccgctggccgtgaggccc
gccgtggtcatgcaaggatctgctcgcaaccaggacgacttgacgcacaagttggcggac
atcgttaagatcaacaaccagctgagacgaaacgagcagagcggcgccgctgctcacgtg
atcgctgaggacgtgaagctgcttcagttccacgtggccaccatggtcgacaacgaactg
ccaggcctgcccagggcgatgcaaaagtctggccgccctctcaaatccataaagcagcgt
ctcaaaggaaaggagggcagggtgagaggtaacctgatgggcaaacgagtggacttctcc
gcccgaaccgtcatcaccccggaccctaatctgcaaatcgaccaagtgggcgtgccacga
tccattgcagccaacatgacgttcccagagattgttacaccctttaatattgacaggttg
caagagctggtacgaagaggaaacagccaatatcctggagccaaatacatcatacgcgac
aacggagacaggattgacctgcggttccacccgaaaccaagtgaccttcatctgcagatc
ggctacaaggtggaaaggcacatgtgcgacggtgacatcgtcatcttcaaccgacagccc
acacttcataaaatgtccatgatgggccacagggtgcggattctgccgtggtccacgttt
cgactcaacctcagtgtcaccaccccgtacaacgctgactttgacggtgatgagatgaac
ctccacctgcctcagtctctggagaccaaggcggagatccaagagctggccatggtgcca
cgtatgatcgtcacgcctcagtccaacaggcccgtcatgggtatcgtgcaggacaccctc
acagctgttcgcaaattcaccaaaagagacgtcttcttagagaggggcgaagtcatgaac
ctcctcatgttcctctccacctgggacgggaaaatgcctcagcccgccatcctcaaaccg
cgcccgttgtggacgggcaagcaggtcttcagcctcatcattccaggtcacatcaacgtg
atccgcacacacagcacgcaccccgacgacgaggacagcgggccttacaaacacatctca
cccggcgacaccaaggtgatcgtggagaacggggagctgatcatgggcatcctgtgtaag
aagtccctgggaacctccgccggctccctcgtccacatctcctacctggagatgggccac
gacatcaccagactcttctactccaacattcagacggtggtcaacaactggctgctcatt
gagggtcattcaatcggtattggtgactccatcgctgatgccaagacgtacctcgacatc
cagaacaccattaagaaagccaagcaggatgtgatagaagtcattgagaaggctcacaac
aacgagctggagccgacccccggtaacaccctgaggcagaccttcgagaaccaggtgaat
cgtatcctcaacgacgctcgtgacaaaacggggtcttctgcccagaagtctctgtcggag
tacaacaacttcaagtccatggtggtggccggctccaagggctccaagattaacatctcg
caggttattgccgtggtggggcagcagaacgtggaaggtaagcgaatcccgtttggcttc
aagcaccggactctgcctcacttcattaaagacgactacggtcctgagagcagaggcttt
gtggagaactcctacctggccgggttgacgccgacagagttcttcttccacgccatggga
ggcagagagggtctgattgatacggccgtcaagacggccgagacagggtacatccagcgt
cgtctgatcaaatccatggagtccgtgatggtgaagtacgacgccaccgtgcggaactcc
atcaaccaggtggtgcagctgcgctacggcgaggacggcctggcgggggagaacgtcgag
ttccaaaacgtggcgacgttaaaaccctcgcacaaggccttcgaaaagaagtttaagttc
gattgcaccaacgagcgcgcgctgaggcggatactgcaggaggacgtggtgaaagacgtg
cagaccaacgcccacgtgcagggcgtcttggagagggagtttgagaagatgaaggaggac
agggagatcctgcgagccattttcccgaccggagacagtaaggtggtgctgccgtgcaac
ctggccaggatgatctggaacgcccagaagattttccgaatcaaccctcgaaccccaaca
gacctgaatcctctgagagtggttgaaggcgttcacgatctgagcaagaagctgatcatc
gtgaacggagacgaccccctgagcagacaggcccaggagaacgccacgctgctgttcaac
atccacctgcgctccacgctctgctccaagcgcatgacggaggagttccgcctttccacc
gaagctttcgactggctgctgggagagatcgagaccaagttcaaccagtccattgctcac
ccaggtgaaatggtcggtgctctggctgctcagtcactgggagagccggccacccagatg
accctgaacactttccactacgccggtgtgtctgccaagaacgtaactctgggtgtgcct
cgtctgaaggagttgatcaacatctcgaagaggcccaagacgccctcgctgaccgttttc
ctgctgggtcaggcagcacgcgacgctgagagggccaaggacatcctctgtcgactggag
cacaccacgctgcgcaaagtgactgccaacaccgccatctactacgacccgaaccctcag
aacacggtggtggccgaggaccaggagtgggtgaacgtctactacgagatgcccgacttc
gacgtgacgcgcatttcaccgtggctgctgcgcatcgagctcgaccgcaaacacatgact
gaccgcaaactgaccatggagcagatcgctgagaagatcaacgcaggttttggagacgat
ctgaattgcatcttcaatgacgacaacgctgaaaagcttgtgctgcgaatccgaatcatg
aacaacgacgagagcaagttccaagaggacgaggaggtggtggacaaaatggacgacgat
gtgttcttgagatgcatcgagtccaacatgctgacagacatgactctgcagggcatcgag
cagatcagcaaggtgtacatgcacttgcctcagaccgacaataagaagaagatcatcatc
acggacgacggagagttcaaggccctgcaggagtggatcctcgagacggacggcgtgagt
ctcatgagggttctcagcgagaaggatgtagaccccgtcagaaccacctccaatgacatt
gtggaaatcttcacggttttggggattgaagcggtaagaaaggcgctggagagggagttg
taccacgtcatctcctttgacggttcctacgtcaactatcgtcacttggctctgctttgt
gacaccatgacctgccgcggtcatctgatggccatcacacgtcacggcatcaaccgtcaa
gacacaggacctctcatgaagtgttcctttgaggagacggtggatgtgttgatggaggcg
tcgtcccacggagagtgtgacccgatgaagggcgtgtctgagaacatcatgctgggccaa
cttgcccctgcaggaacgggctgctttgacctgctgttggatgctgagaagtgcaaatat
gggatggagattccaacgaacattcctggcatcagcgtggccggacccactggaatgttc
ttcggctcagtgccaagtcccatgagtggtatgtcacctgccatgacgccgtggaacacg
ggggccacccctgcctacggtgcctggtcccccagtgtcggaagcggcatgacccctgga
gcagcgggcttctctcccagcgcagcttcagacgccagtggcttctctccaggttactcc
ccggcctggtctcccacacccgggtctccagggtctccaggacctgccagtccatacatc
ccctccccaggtggagctatgtcaccaaactactcccccacctcccccgcctacgagcct
cgttctccagggggctacaccccgcagagccccggctactccccaacatcgccctcctac
tcccccacatcaccttcctactcccccaccagccccaactacagccctacgtctccttca
tactccccaacctcgcccagttactccccaacatctccttcctattcacccacgtctccc
tcctattccccaacgtctccctcctattcccccacctccccctcgtactcccccacatct
ccgtcatactcccccacctcgccgagctacagcccgacatcaccgagctacagtccaacg
tcccccagctactcccccacatcaccctcctactcccccacctcgccttcttattctccc
acatctccgtcctactcccccacttccccctcctactcccccacctccccctcctactcg
ccgaccagcccaagctacagccccacgtctccaaattacacccccacgtcccccagctac
tccccaacctccccttcatactctccgacgtcgccctcctattccccgacttcccccaac
tacaccccgactagccccaactactcccccacctccccctcatactcccctacctcgcct
tcgtactccccctcaagtccacgttacacaccccagtcacctacctacacgcccagctcg
ccatcttacagccccagctccccctcctactccccaacctcccctaaatacaccccgacc
tccccctcctacagccccagctccccagagtacacgcccacctcgcccaaatactccccc
acctcgcccaaatactccccgacgtcgccgaagtactcccccacttctcccacctactcc
cccacgactccgaaatacagccccacctctcccacctactcccccacctcgcccacctac
acccctaccagccccaagtactcccctacctcccccacatactccccgacttcgcctaag
tactcgcccacgtctcccacatactcgccaacgagtcccaaaggctccacctacagcccc
acctcccccggctacagccccacctcccccacctacagcccagccatcagcccagatgac
agcgatgaggagaacaattga
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integrated database retrieval system
