Nematolebias whitei (Rio pearlfish): 119409508
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Entry
119409508 CDS
T08042
Symbol
pcdh7b
Name
(RefSeq) protocadherin-7b isoform X1
KO
K16498
protocadherin delta 1
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03273
Virion - Lassa virus and SFTS virus
nwh04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
119409508 (pcdh7b)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
119409508 (pcdh7b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
nwh01009
]
119409508 (pcdh7b)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
nwh04515
]
119409508 (pcdh7b)
Protein phosphatases and associated proteins [BR:
nwh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
119409508 (pcdh7b)
Cell adhesion molecules [BR:
nwh04515
]
Cadherins
Protocadherins
119409508 (pcdh7b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_FAT4_N
Ig_CLSTN
Cadherin_CELSR2_9th
Cadherin_2
Ig_Cad99C_N
Mid2
TMEM154
LYRIC
Adeno_E3_CR2
DUF1180
Motif
Other DBs
NCBI-GeneID:
119409508
NCBI-ProteinID:
XP_037532330
LinkDB
All DBs
Position
1:complement(31702563..31867323)
Genome browser
AA seq
1257 aa
AA seq
DB search
MRTTTTAVDYFYYCMLILQLLVHQPAAKQVLLYRLAEEGPADVRVGNVAADLGIVAGSGE
VTFTLESGSEFFKIDNITGELSTNERRIDREKLQQCQMIFDENECFIDFEVSVIGPAQSW
VDLFEGKVIILDINDNTPSFPSPVLTLSVEENRPIGTLYLLPTATDRDFGRNGIERYELI
QDNGENSRRMGSSGDSYSGKRRFEDGASRSSVFELQVADTTDGEKQPQLIIKGALDREQR
DSYELTLRVRDGGDPPRSSQAILRVMITDVNDNSPRFEKSVYEADLPENSSPGAPILQLK
AADADVGVNGQIEYVFGAATESVRRLLRLDESTGWLSVLHRIDREEVSQLRFTVMARDRG
QPPKTDKATVVLNIKDENDNVPAIEIRKIGRIFLKDGVANVAEDVVVDTPIALVQVSDRD
QGENGIVTCTVVGDVPFQLKPASEMEGEQNKKKYFLHTSAPLDYEATQEYNVVIVAVDSG
SPSLASNNSLIVKVGDTNDNPPIFSQNVVEVSFPENNAPGERVTRVTAADADSGKNAELA
YSLDSSVNGIFSIDADSGDIRVNTILDREQTERYEFKVIAKDKGINTLQGSATVVVLVAD
KNDNDPKFMQDVFTFYVKENLDPNSPVGMVTVIDADKGQNAEMGLFIEEEEEIFSIENET
GTIFSTLSFDREQKTTYTFRVKAVDGGDPPRSATATVSLFVMDENDNAPTVTFPINNSFT
LLHPSSSIRTVVRAVIATDTDTGINADLNYSIIGGNPFKLFEIDGGTGVISLMAKLEQKH
YGLHRLVVQVNDSGQPSQSTTTLVHVYVNETIYNSSIVEAQVAKSLSTSLNTNIAGDPNY
DLSKQRLSIVIGVVSGIMTVILIILVVVMARYCRPKNKNGYEAGKKDHEDFFTPQQHDKS
KKPKKDKKKQKSKQPLYSSIVTVEASKPNGQRYDGVNEKLSDSPGMGRYRSVNGGPGSPD
LARHYKSSSPLPTVQLHPQSPTAGKKHQAVQDLPPANTFVGTGDNISLGSDHCSEYSTQT
INKYNKQPFRRVTFSVVSQPQDPHQQGSLQSCYDSGLDESETPSSKSSSGPRLGALPLPE
DSYERTTPDGSVGEAEHMENDSRPLPDVAMTGKCTRECNEYGHSDSCWMPVRTSPERRPS
KSASNPQQPKLSTFMTGNGSSSSSVEQPGSQETLAMAAMANGDPAAAHMMGDRNRNLLNK
KMASSSSSYEAFGSPSYGSPGGVEETLGHPTEEIPLAPTGEYKPTSCGTLTRREVYL
NT seq
3774 nt
NT seq
+upstream
nt +downstream
nt
atgaggactactactactgcagtggactatttttactattgcatgctcattttgcagctg
cttgtgcatcagcccgctgcaaagcaagtgctcctgtaccgcctggctgaggagggaccc
gccgatgtcagagtgggcaacgttgccgccgacctgggcatagttgccgggtcgggggaa
gtgacattcaccttagagtctggctcggaattcttcaaaatagacaacatcacaggtgag
ctcagcaccaacgagaggcgaatagatcgtgagaaactgcaacagtgccaaatgatcttt
gatgaaaacgagtgctttatagattttgaagtgtctgtcatcggaccagctcagagctgg
gttgacctcttcgaggggaaagtcatcatattagatataaatgacaacactccgtctttt
ccgtcccctgtcctgaccctctctgtggaggagaacagacccattggaaccctttatctg
ttgcccacagccacagacagagattttggcaggaatggaatagagagatacgagctcatc
caggacaacggggagaactcgagacgcatggggtcgtctggggattcgtactctgggaag
aggagatttgaggacggtgcgagcaggagcagtgtgtttgaactgcaagttgctgacacc
actgatggggagaagcagcctcaactcatcattaagggggccctggacagagagcaaaga
gactcctatgagctcacgttacgtgtgagagatggaggcgacccccctcgctcctctcag
gccattttgagagttatgatcactgatgtgaatgacaacagccctcggtttgagaaaagt
gtgtatgaggctgacttgccagaaaacagctcccccggcgcccctatcctgcagctaaaa
gcggctgatgcagacgtgggggttaatggtcaaatcgagtatgtgtttggggcagccaca
gagtctgtaaggaggctgctgaggttggatgagagcactgggtggctgagtgtgttgcac
cgcattgaccgtgaagaagtgagtcaactgaggttcaccgtaatggcccgtgaccgaggt
caaccacccaaaacggacaaggccacggttgtgttaaacatcaaggatgagaacgacaat
gttcccgccattgaaattcgaaaaattggacgcattttcctcaaagacggagtggccaat
gttgctgaggatgtggtggtggacacgcccattgccttagttcaggtgtcagaccgagac
cagggggaaaatggcatagtgacctgcacagtggttggggacgttccctttcagctcaaa
ccggccagtgagatggagggtgagcaaaataaaaagaagtatttcctccacacgtctgca
cctctggactatgaggccacacaggaatacaatgtggtcatagtggctgtggactctgga
agtcccagtctggcaagtaataactctcttattgtcaaagtgggtgacactaatgacaac
cctcctatcttcagtcaaaatgtagtagaggtgtcctttcctgaaaacaatgcgcctggt
gagagggtgacaagagtgacagctgctgatgcagacagtgggaaaaatgcagaactagcc
tattctctagattcatcagtaaatgggattttttctattgatgcagacagtggagacatc
agagtaaacaccattctggatagagagcaaacagaacgctatgaatttaaagtgatagct
aaagataagggcataaacacccttcagggttctgcgactgtggttgtacttgtggccgat
aagaacgacaatgacccgaagttcatgcaagatgttttcaccttctatgtcaaagaaaat
cttgatccaaacagcccagttggcatggttacggtgattgatgcagataaaggccagaat
gcagagatgggtcttttcattgaagaagaagaggagatcttttctattgagaatgaaact
ggaactattttttccaccctgtcatttgaccgagagcaaaaaaccacatacacatttcgt
gttaaagctgtggatggtggtgacccacccagatctgccacagctacggtttcactcttc
gtcatggatgaaaatgacaacgcaccaacagtcaccttcccaataaacaactccttcact
ctgcttcatccttccagtagcattagaacagtagtccgagctgtcatagccactgataca
gacactggcattaatgcagacctgaactacagcatcattgggggcaatcccttcaagctt
tttgaaattgatgggggcactggggtcatttcactaatggcaaagctggagcagaagcat
tatggcctccacagacttgtggtccaggtgaatgatagtgggcagccttcccagagcacc
accactctggttcacgtgtatgttaacgagactatttacaattcatctattgtggaggcc
caggtggctaaaagcttaagcacatctcttaacaccaacattgcaggtgaccccaactat
gatctaagcaaacaacgcttaagcatcgtgattggagtagtttcaggcattatgacagtc
attcttatcatacttgttgttgtcatggcccgttattgccgcccaaaaaataagaatggc
tatgaggctgggaagaaggatcatgaagatttctttacgccacagcagcatgacaaatct
aagaagcccaagaaagataagaagaagcaaaaatccaaacagcctctctacagtagtatt
gtcacagtagaggcctccaaacccaatgggcaacggtatgatggcgtcaacgagaagctt
tctgacagtcctggcatgggtcgctaccgttcggtcaatggcgggccgggcagtccagac
ctggcacggcactacaagtccagttcaccacttcccactgttcagcttcatccacagtca
ccaacagctggaaaaaagcaccaagcagttcaggacctgcctcctgccaatacatttgtt
ggcaccggagataacatttctcttggatctgaccattgctccgagtacagcactcaaact
atcaacaaatacaacaaacagccgttccgccgagtgaccttttcggtggtgagccagccc
caggaccctcaccagcagggatcactgcagagctgctacgacagcggcctggatgagtcg
gagacacccagcagcaagagttcttcgggcccccggctgggcgcccttcccctgcctgag
gacagctacgagaggacaacgccggatggcagtgtcggtgaggcagagcacatggagaat
gactcccggccgttgcctgacgtagccatgactggcaagtgcaccagggagtgcaacgag
tatggccactcggactcctgctggatgcctgtgcgcacgtcgccagagcgacggccatcc
aagtcggcctccaacccccaacaaccaaagctttccactttcatgactggaaacggcagc
agcagcagtagcgtcgagcagcctggcagccaagagaccctcgccatggccgccatggcc
aacggggaccccgcagccgctcacatgatgggagaccgcaatcgtaacctgctcaataag
aagatggcctcctcctcttcctcctatgaggcctttggctcgccttcctacggctcccca
ggaggtgttgaggagacactgggacaccccactgaggagatcccccttgcacccactgga
gaatacaagccaacgtcctgcggtaccttgacacgacgggaggtgtacctgtga
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