Nematolebias whitei (Rio pearlfish): 119409509
Help
Entry
119409509 CDS
T08042
Symbol
cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nwh03016
]
119409509 (cdkal1)
Enzymes [BR:
nwh01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
119409509 (cdkal1)
Transfer RNA biogenesis [BR:
nwh03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
119409509 (cdkal1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TraT
Motif
Other DBs
NCBI-GeneID:
119409509
NCBI-ProteinID:
XP_037532327
LinkDB
All DBs
Position
5:26180158..26475379
Genome browser
AA seq
564 aa
AA seq
DB search
MPSNCDPLIEDIEDMVSSGDPTPHERQSARKNIIPRARKKKEPLNNEELQADSLIPGTQK
IWIKTWGCSHNNSDGEYMAGQLAASGYKMTDEPTEADVWLLNSCTVKNPAEDHFRNSIRK
AQEQQKKVVVAGCVPQAQPRMDYLRSISIIGVQQIDRVVEVVDETLKGHSVRLLGQKKDG
GRRLGGARLDLPKIRKNPLIEIISVNTGCLNACTYCKTKHARGDLASYPVEELVERARQS
FQEGVCEIWLTSEDTGAYGRDVGTDLPTLLWRLVEEVPEGAMLRLGMTNPPYILEHLEEM
AKILNHPRVYAFLHVPVQSASDSVLMDMKREYCIDDFKRVVDFLKERVPGVTIATDIICG
FPGETEDDFQETVNLVKHYQFPSLFINQFYPRPGTPAAKMEQIPAHVKKQRTKELSEVFH
SYNPYDHKVGERQRVLVTEESFDAQYYVAHNKFYEQVLVPKRLEFKGKMIEVDIYEAGKH
FMKGKPVEGSKPFTPSIAAPLQKGQVSGLMQEHVVNGTRGVATAPPKFAVLTGPYSLDRD
GLKRLGIGLALAAAILAFILDKLY
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgccgtccaactgtgaccctctgattgaagacattgaggacatggtgtcctctggggac
cccactcctcatgaaagacagtctgccagaaagaacataataccacgagccaggaagaag
aaggagcctctgaacaacgaggagctccaagctgacagtttgattcctggcacacagaag
atctggatcaaaacatggggctgcagtcacaacaactcagatggagagtacatggcagga
cagcttgctgccagtgggtacaagatgacagatgagccaacagaagcagacgtttggttg
ctcaacagctgtacggtgaagaaccctgcagaggaccacttcaggaactccatcagaaaa
gctcaggagcagcagaagaaggtggtggtagcaggttgtgttcctcaagctcagccccgg
atggactacctcagaagtatcagcatcattggggtccaacagattgaccgagtggtggag
gtggtggacgagactcttaaaggtcactcagttcgtctccttggacagaagaaagatgga
ggcaggagacttggaggggctagactggaccttcccaagatcaggaagaaccctcttatt
gaaatcatctccgttaacactgggtgtctgaatgcgtgcacctactgcaagaccaaacac
gctcgaggagacctggccagctaccccgtagaggagctcgtggagagagccaggcagtcc
ttccaggagggagtgtgtgagatctggttgaccagcgaggacaccggggcgtatggtaga
gacgtggggacggacctgcccacgttgctgtggagattggtggaggaagttcctgaaggt
gccatgctgaggctgggcatgaccaacccaccttacatcctggagcacctggaggagatg
gctaagatcctgaaccatccccgggtctatgccttccttcatgtgcccgtgcagtcggcc
tcggacagcgtcctgatggacatgaagagagaatactgcatcgacgacttcaagcgagtg
gtggacttcctcaaagaaagagttcctggtgtaaccatagctacagatatcatctgtgga
tttcccggtgaaactgaggacgacttccaggagacggtgaacctcgtgaaacactatcag
tttcccagtcttttcatcaaccagttctaccccagacccggtacccctgctgctaagatg
gagcaaatcccagcacatgtgaagaagcaaaggacgaaggaactctccgaagtcttccac
tcctacaacccatacgaccacaaggtgggtgagaggcagcgtgttctggtgacagaggag
tcgttcgatgctcagtactacgtggcccacaacaagttctacgaacaggtgctggtaccc
aagagacttgagttcaaagggaagatgatcgaggtggacatttacgaggcaggaaaacac
ttcatgaaggggaaaccagtggaaggcagcaaaccgttcacaccctccatcgctgcgccg
cttcaaaagggacaagtgtctggtttgatgcaggaacatgtggtgaacggaaccagagga
gttgctacggcaccgccgaagtttgccgtcctgactggaccgtatagtttggacagagac
ggactgaagaggctggggattggactcgcactggcagcagccatcttggcctttattctg
gacaagctgtactga
DBGET
integrated database retrieval system
