Nematolebias whitei (Rio pearlfish): 119409855
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Entry
119409855 CDS
T08042
Symbol
prdm1a
Name
(RefSeq) PR domain zinc finger protein 1a
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nwh03000
]
119409855 (prdm1a)
Transcription factors [BR:
nwh03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
119409855 (prdm1a)
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Paralog
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GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
Zf-C2H2_ZNF451_C
zf-C2H2_6
C2CH-3rd_BIRD-IDD
zf-met
zf-C2H2_jaz
zf-C2HE
B129_C2H2-zf
FOG1-like_PR
Motif
Other DBs
NCBI-GeneID:
119409855
NCBI-ProteinID:
XP_037532690
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Position
5:7804481..7815846
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AA seq
846 aa
AA seq
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MCGWDQSVTATSHSSAMLTSEGAHTMDQDDHSAKMASTSSDGGETMTDTDVDMDMDEADM
TQWTEKEFEEKRIYIVKDTALEAGPDSDATMTTTRAEASLPRNLVFKHLAGSKEVVGVCS
REYIPKGTRFGPLVGEIYTADSVPKDANRKYFWRIYADGEFHHFVDGLDETRSNWMRYVN
PAHSAAEQNLAACQNGMEIYFYTVKPVPAGAELLVWYCHDFARRLQYPPSGELMMQKLKQ
SLLEVKQQQVDRRGSRIEVFSPSPVALTPSPPKREHSVLSILRGTNSTSSSSTTKREPSR
PLPTRPRCADSPDRPLYPRAIYPHLRPHLHISEDFLSHKSGQIVYPLTHSPGKQSSATPS
PSARSSPDSSPQGSPSGPAPSPASFYPTGLSSYTGYSPPSATLSSPFYTSGAPYSRYLLP
HHYPLPGGVPAIGGIFPRIYPVYSNLLPPHVPLLPSDPAGRRFLMPEPVHPSSISGHRDF
LLPGPTSAFSAATTLKDKAGPHNSYTMHPNLHGPAHAPSSGSPTAGTAPPSEQMPTKPTS
ALLGNSSEHHSDEEAINLTKVKRGAGSAGYKALPYPLKKQNGKIKYECNVCSKTFGQLSN
LKVHLRVHSGERPFKCQTCNKGFTQLAHLQKHYLVHTGEKPHECQVCHKRFSSTSNLKTH
LRLHSGEKPYHCKLCPAKFTQFVHLKLHKRLHSRERPHKCPNCHHHYIHLCSLRLHLKGY
CLAANSGSDSPNVSSQASLEEIHRANEEIERFDISEHAEQLEQLQGGVEMDAMLEKQVLG
MVWRETDLKSPHFHSYHNGSATELLSASYGAYESPNETSVIKMRHSSPIPPLAANITVKK
ESEDIA
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgtgtggatgggaccagagtgtcacggcgacctctcatagctcggccatgttgaccagt
gagggggcgcacaccatggaccaggatgaccacagcgccaagatggcctccacaagttca
gatggaggcgagacgatgactgacaccgacgtcgacatggacatggacgaggcagacatg
acgcaatggacagagaaggagtttgaggaaaagcgcatatacattgtcaaagacacggcg
ttggaggcggggccagacagtgacgccacgatgacgacgacacgagcagaggcgtcgctg
ccccggaacctggtcttcaaacacctggcaggcagcaaggaggtggtcggcgtgtgcagc
agggagtacatccctaaaggaactcgcttcggtcccttggtgggcgagatttacacagcg
gacagcgtacccaaagacgccaaccgcaagtacttctggaggatctatgcggatggcgag
tttcatcactttgtcgatggtctggatgagacgcgctcgaactggatgcggtacgtgaac
ccggcccactccgccgccgagcagaacctggccgcgtgtcagaacggcatggagatttat
ttctacactgtgaagcccgtacctgctggcgccgagctgctcgtctggtactgtcacgac
ttcgcccgacgcctgcagtacccgccgtcaggagagctgatgatgcagaaacttaagcag
tcgctattagaggtgaagcagcagcaggtggacagacgggggagcagaattgaagtgttc
agcccatctcccgtcgcattaacgcccagccctcccaagagagagcacagtgtcctttcc
attctgcgtggcaccaacagcacctcttcctcatctaccaccaagagggagcccagccgt
cccctccctacccgccctcgctgtgctgacagcccagatcgccccctgtacccccgggcc
atctatccacatctcagaccacatcttcacatctcagaagacttccttagccacaagtct
ggtcagattgtttaccccttaactcattcccctggcaaacagtcttcagccaccccaagt
ccatctgcaagaagcagcccagacagcagtcctcaaggtagcccttctggaccagcacca
tcacctgcttctttctatcccacaggactgagttcctacactggttactcccctccatct
gccacactctcgtcaccattctacacttcgggagccccctactctcgttaccttcttccc
catcactatcctctacctggcggcgtccctgccataggaggaatctttcccaggatatac
cctgtctacagcaacctcttaccccctcatgtgccccttctgccttctgacccagcaggg
aggcgcttccttatgcctgaacctgtgcacccctcctctatctctggccacagagacttc
ctacttcctgggcccaccagtgccttttctgccgctactaccttgaaagacaaggcaggg
cctcacaactcctataccatgcaccctaacctgcatggaccagcccatgctccttccagt
ggctcaccgactgctggcacagcacctcccagcgagcagatgcccactaagcctacctct
gccctcctgggcaattctagcgaacatcattctgatgaagaggctataaacctgaccaaa
gtgaagcgtggcgcaggctcagcaggctacaaggcactgccttatcctctgaaaaagcaa
aatggcaaaatcaagtatgagtgcaacgtgtgcagtaagacctttgggcagctgtcaaat
ctgaaggttcatcttcgtgtgcacagcggcgagagacccttcaaatgtcagacctgtaac
aaaggtttcactcagcttgctcacttgcaaaaacactacctggtccacactggagagaag
ccgcatgaatgtcaggtatgtcacaagcgcttcagcagcaccagcaacctgaaaacccac
ctgcgcctccactcaggggagaagccgtaccactgcaaactctgcccagctaagtttacg
caatttgtccacctcaagctgcacaagcgccttcattcccgtgagcgaccacacaaatgt
cccaattgccatcaccactacatccacttatgcagcctgcgacttcacctgaagggttac
tgtttggcggcgaactctggctccgacagtccaaacgtttccagccaggcttcattggag
gagatccaccgcgccaacgaggagatcgagcgctttgacataagtgagcatgcagagcaa
ctggagcagctgcagggaggggttgagatggacgccatgttagagaagcaggtcttgggg
atggtatggagggagactgacctcaagtccccccacttccactcctaccataacggaagc
gccacagagctgctgtcagcaagttatggtgcttatgagtccccaaacgagacgtcggta
atcaaaatgcggcacagcagccccatcccaccacttgctgctaacattactgtcaagaag
gagtcagaggatatcgcctaa
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