Nematolebias whitei (Rio pearlfish): 119410420
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Entry
119410420 CDS
T08042
Name
(RefSeq) nucleotide-binding oligomerization domain-containing protein 1
KO
K08727
nucleotide-binding oligomerization domain-containing protein 1
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh04621
NOD-like receptor signaling pathway
nwh05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
119410420
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
119410420
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
nwh04054
]
119410420
Pattern recognition receptors [BR:
nwh04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
119410420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
RVT_1
NLRC4_HD2
NOD2_WH
LRR_4
AAA_16
CRS1_YhbY
NPHP3_N
AAA_22
ABC_tran
RsgA_GTPase
PIF1
RNA_helicase
Tubulin_3
Motif
Other DBs
NCBI-GeneID:
119410420
NCBI-ProteinID:
XP_037533260
LinkDB
All DBs
Position
5:45662004..45771758
Genome browser
AA seq
1002 aa
AA seq
DB search
MRGQRAPSIDGLTVEFYKAYWDILAEDLLGVLRESLSTGSLPLSCRRAVITLLPKKGNLQ
EMKNWRPVSLLCTDYKILSKVLATRMREAMEQVIHRDQTYCVPSRSMVDNIYLIRDVLEV
SSSLGLNTALVSLDQEKAFDRVEHNFLWETMREFGFSAGFIAKIQVLYSGDESVLKINVS
RYCGKLRDEMNRDTSFIMSYGQQDETRLEDLYTDTMMEMLNDCNESLGFIDSLKQILGND
GVFNPQGEIIYVMGDAGVGKSILLQKLQNLWSKKELPTDAIFFFKFRCRMFSIFKDSEQI
SLRDLLFKYNCYPDHDPNNEVFDYILRFPGKVILTFDGYDEIQEVIDQINVPEMVSPEDS
ANSLQLLISLLSGKLLKGSKKVLTTRTGVEMQSRLIKKKVVLRGFSPGHLKTYINLHFKE
QDHRELVSVQLDASPHLCGLCSTPLFCWIVFKSFSHLHTMHDSFHLPETCLTLTDIFLLL
SEVFLSRSASPAPSLLKKSTRCTSEIFRAGLRPLVAFATLALQGLKRGSFLCNQMEINES
GLTEEDMVMGFLRPVNNFNESGDTTTFEFIHTTLQSFLAAFALVLDEDAAASSVLKFFTE
CSRKRKQPFLPLACCVSSSEKTSEKKSFATNEHLQFTNLFLSGLLSKNHTSLMGHLVPPV
LLKKKQALLKSYLSTSVKSHLQGLPVFQGNEGKKVHVLPNFLWILRCIYETGSKEIAKMT
AKGITAGFIKLGYCNVHSGDCTALNFVLQHRRTLLGLDMDNNNISDYGVKQLRPSFCMMT
IVRLCVNNLSDSSMEVLAEELCKHKIVKVLGLYNNNITDTGAKLVAQIIEECPKLEVVKI
GKNKITSVGGRYLASAIQKSTSIFDVGMWGNSIGDEGAEAFAEALKNHPRLTNLSLSANG
ITSKGGKILAEALLQNSVLRIFWLVQNELGDEAAPHLAKLIQADTGLSHLWIISNKFTVA
GIRQFINALDHNTKLKEICVKGNLLSEEEQQEFLPQKRLRFH
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgcgaggccagagggcacccagcatagatggactcaccgtagaattttataaagcatac
tgggacatcctggcagaagatctactgggtgtcctcagggaaagcctaagcactggctca
ctcccactatcgtgccgcagagcggtcatcactctcctgcccaaaaaagggaacctacag
gagatgaaaaactggcgcccggtatccctgctctgcactgactataaaatcctctccaag
gtcctggctaccagaatgagagaggctatggagcaggtcatccaccgggaccagacatat
tgcgtccccagcaggtccatggtggataacatctacctgattcgagacgttttggaagtc
tccagttcattaggcctgaacacagccttggtctcacttgaccaagaaaaggcttttgac
cgcgttgaacacaacttcctctgggaaaccatgagggagttcgggttcagcgctggtttt
atagccaagatccaggtgctgtacagtggcgatgagagtgtgctgaaaatcaacgtcagt
aggtactgtggaaagctgcgagatgagatgaaccgagacaccagcttcatcatgtcttat
ggtcagcaagacgagacccggttagaggatctctacactgataccatgatggaaatgttg
aatgactgcaatgaaagtcttggttttatagactctctgaaacagatcctggggaatgat
ggagttttcaatccccaaggtgaaatcatctatgtgatgggggacgctggggtgggaaaa
tccattcttctgcagaagctacagaacctctggtccaagaaggagctgccgacagatgcc
atcttttttttcaagtttcgctgcagaatgttcagcatctttaaagattcggagcagata
tccctcagggatcttttgttcaaatacaactgctacccagatcacgatcccaacaatgaa
gtctttgattacatcctgcgctttcctgggaaggttattcttacttttgacggctacgat
gagattcaggaggttatagaccagataaatgttcctgaaatggtgtctccagaggacagc
gctaactccctccagctgctcatcagcttgctctctgggaaactactcaagggctccaag
aaggtgctcacaactcgaacgggagtcgaaatgcaaagtcggttgatcaaaaagaaggtg
gttttacgtggcttttctccaggtcacctaaagacgtacataaatctgcacttcaaggag
caggatcacagggagctggtgtcagttcagctggatgccagtcctcacctctgtggcttg
tgttccactccattgttctgctggattgtcttcaagagctttagtcacctgcacacaatg
catgatagttttcatctgcctgaaacctgcctcacacttactgacatctttctcctactg
tctgaagtgttcctcagccgatcggcatctcctgctccttctctgctgaagaaaagtacc
cgctgcacctcagaaattttccgagctgggctcaggcctcttgtggcatttgctacactg
gcccttcaaggtttgaagagggggagttttctttgcaaccagatggaaatcaacgagtct
ggtctgacagaggaggacatggtcatgggttttctcagacctgtcaacaactttaatgag
agtggcgataccactacttttgaattcatccacaccacccttcagtcctttttggcagcg
tttgctcttgtattggatgaggatgctgctgccagttccgtcctcaagttttttacagaa
tgtagcagaaagagaaaacaaccttttctacctttggcctgctgtgttagcagctctgaa
aagaccagtgaaaagaagtcctttgcaacaaacgagcaccttcagtttacaaatctgttc
ttgtcaggattgctgtccaaaaaccacacaagtctgatgggacatctggtgcctcctgtt
ttattgaaaaagaagcaagccttgttgaagtcctatctgtccaccagtgtcaagtcccac
ctgcagggcttgcccgtctttcaaggtaacgaaggcaagaaagttcatgttctgcccaac
tttctctggatattaagatgcatctatgagacaggaagcaaagagattgctaagatgaca
gcaaaaggcatcacagcgggtttcatcaagctggggtactgcaacgtgcactcaggtgac
tgcactgccctaaactttgtgctgcagcaccgacggacgctactggggcttgacatggat
aacaacaacatcagtgactatggtgtgaagcagctcaggccttcgttttgcatgatgaca
attgtaagattgtgtgtcaacaacctatcagacagcagcatggaggtactagcagaggag
ctgtgcaaacacaagattgtgaaagttttggggctttacaataataacatcacagatact
ggagccaagctggttgctcagataatcgaagaatgccccaagctggaagttgtcaagatt
ggtaaaaacaagattacaagtgttggtggaaggtacttggccagtgcaattcagaaaagt
acttctatatttgatgtggggatgtgggggaacagcattggtgatgagggagcagaagca
tttgctgaagctttgaagaaccaccctaggctcaccaacctcagtctctcagcgaatggc
atcacatcaaaaggagggaagatcctggcagaagcactgcttcagaacagcgtcctcagg
atattctggttggtgcagaatgagttgggcgatgaggcagcaccacatctggccaagttg
atccaagcagatactggcctaagccacctttggataattagcaacaagttcactgtggct
gggatccgacagttcattaatgctcttgatcataacactaaactcaaagagatttgtgtg
aaaggaaacctgctctctgaagaggaacagcaagagtttctgccacagaaaaggctacgg
ttccactga
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