Nematolebias whitei (Rio pearlfish): 119410566
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Entry
119410566 CDS
T08042
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh04142
Lysosome
nwh04144
Endocytosis
nwh05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
119410566
04142 Lysosome
119410566
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
119410566
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nwh04131
]
119410566
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nwh04147
]
119410566
Membrane trafficking [BR:
nwh04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
119410566
Exosome [BR:
nwh04147
]
Exosomal proteins
Proteins found in most exosomes
119410566
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_PEP5_VPS11
TPR_Vps41
TPR_1
Motif
Other DBs
NCBI-GeneID:
119410566
NCBI-ProteinID:
XP_037533380
LinkDB
All DBs
Position
6:24322262..24367059
Genome browser
AA seq
1677 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNN
PIRRPISADSAIMNPASKVIALKAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA
LVTDNAVYHWSMEGDSQPIKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAAGFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPPTGN
QPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRISG
ETIFVTAPHEPTAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGA
EELFARKFNTLFAAGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGI
LLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYL
RANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWIFLLRNVMRISPEQGLQFSQMLVQDE
EPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPMEGPLQTRLLEMNLVHAPQVADAIL
GNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLSV
EDSLECLRAMLSANIRQNLQICVQVASKYHEQLTTQALTELFESFKSFEGLFYFLGSIVN
FSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDSERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNSLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLIMVVRGQF
STDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPYY
DSRVVGKYCEKRDPHLACVAYERGQCDQELILVCNENSLFKSLSRYLVRRKNPELWASVL
LETNNYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTS
AVQVLIEHIGNLDRAYEFAERCNEPPVWSQLAKAQLQKGMVKEAIDSYIKADDPSAYMEV
GQAAAQSGNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQ
VGDRCYDDKMYEAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC
VDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN
HPADAWKEGQFKDIVTKVANVELYYKAVQFYMEFKPLLLNDLLIVLSPRLDHTRAVNYFS
KMKQLPLVKPYLRSVQNHNNKGVNEALNNLFITEEDYAALRTSIDAYDNFDNISLAQSLE
KHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDIELAEELLAWFLNE
DKKECFAACLFTCYDLLRPDVVLETAWRHNIMDFSMPYFIQVMREYLTKVDKLEASESLR
KQEEQATESQPIVYGTPQLMLTAGPNMAVPPQQTYSYGYTAAPAYNQPPQPNFGYSM
NT seq
5034 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatactgcctatccgctttcaggagcacctgcagctccagaacctgggaatc
aacccagccaacatcggctttagcactctaaccatggagtccgacaagttcatctgcata
agggagaaagtgggggagcaggcccaggtcgtcatcattgacatggctgaccccaataat
cccattcgccgccccatttctgctgacagtgccatcatgaaccctgccagcaaagttatt
gccctcaaagctgcaaagaccctgcaaatctttaacattgagatgaagagcaagatgaag
gctcatacgatgacggacgatgtgactttctggaagtggatctctctcaacactgttgcc
ctggtcacagacaacgcagtctaccattggagcatggagggagactctcagccaatcaaa
gtctttgaccgtcactccagtctggcaggttgccagatcatcaattaccgcaccgatgcc
aaacagaagtggttgcttctcattggcatttcagcacagcaaaaccgtgttgttggagcc
atgcagttatactctgtggatagaaaagtgtctcagcctattgagggtcatgctgctggt
tttgcccaattcaagatggaaggcaacactgaagagtcgactctgttctgctttgctgtg
cgtggacaggcaggaggaaaacttcatattattgaagtgggaactccaccaactggaaac
caaccttttcccaaaaaagctgtagatgttttctttcctccagaagcccagaatgacttc
cctgttgccatgcagatcagttccaagcaagatgtagtctttctcattaccaaatatggc
tacatccacctgtatgacctcgagactgggacttgcatctacatgaataggatcagtgga
gagaccatctttgtgactgctcctcatgaacccactgctggtattattggagttaacagg
aaaggacaggtgttgtcagtatgtgtggaggaggagaacatcattccatacatcaccaat
gtgctccagaatccagacctggctcttcgcatggctgtacgcaacaaccttgctggtgct
gaggagctgttcgcccgcaagtttaacacactctttgcagcaggaaattactcagaagct
gccaaagtggcagccaacgcacctaagggcattctgcgaactccagacaccatccgtagg
ttccaaagtgttccagcccaaccaggccagacgtctcctttgctccagtattttggcatt
ctgctggatcaaggccaactcaataagtttgagtctttagagctgtgcaggcctgtgctt
caacagggtcgcaagcagttactagagaaatggctaaaggaggacaagctggagtgctcc
gaggagcttggagatttggtgaaatctgtagatcctactctagccctcagtgtttatctc
agagccaacgtccccaacaaagtcattcagtgctttgcagagactggacagttccagaag
attgtcctttatgccaagaaggttggctacactccagactggatctttctgctaaggaac
gtgatgcggatcagtccagaacaaggcctccagttctcccagatgctggttcaggatgaa
gagccacttgctgatatcacacaaattgtggatgtctttatggagtataacctgatccag
cagtgcacatccttcctgttagatgccctgaaaaacaacagacccatggagggacctctg
cagacacgtttgctagaaatgaatttggttcatgcaccacaggttgcagacgccatcctt
ggcaatcagatgttcactcactatgatcgcgcccatgtggcacagctgtgtgagaaggct
ggcctcctgcagagggctctggagcattatactgacttgtatgacataaaacgtgctgtg
gtccacacacaccttttaaacccggagtggctggtgaatttctttggctccctctcagtg
gaggactcactggagtgcctcagggctatgttgtcagccaacattcgtcagaacctgcag
atctgtgtgcaagttgcttccaagtaccacgagcagcttacgactcaggccctcactgaa
ctttttgagtcattcaagagctttgaggggttgttctatttcttgggctccattgtaaat
ttcagccaggatccagaggtccacttcaaatacattcaggctgcctgtaagacgggccag
atcaaagaagtggagaggatctgcagagaaagcaactgctacgactctgaacgcgtgaag
aacttcttgaaggaggccaagctgactgaccagctgcctttaatcattgtgtgtgaccgc
tttgattttgtccatgacctggttttgtacctttatcgcaacagcctgcaaaaatacatt
gagatctacgtacagaaggtaaacccaagccgtctgcctgtagtcatcggtggtttattg
gatgtagactgtgctgaggacgtgatcaagaacctgatcatggtggtgagaggacagttt
tccactgatgaacttgttgctgaagtggagaagagaaaccgactgaagctgttgctgccc
tggttggaggctcgcattcatgaaggttgtgaggaacctgcaactcacaatgctttggcc
aagatttacatcgacagcaacaacaaccctgagcgcttcttaagggaaaacccctactat
gacagccgtgtggtgggcaagtattgtgaaaagagagacccccacctggcctgtgtggct
tatgaaagaggacagtgtgaccaggagctcattcttgtgtgcaatgaaaattcactattc
aagagtctgtcccgttatcttgtacgtcgcaagaaccccgagctttgggcgagtgtactg
ctggagacgaacaactacagaagaccactcatcgaccaagtcgtccagacagctttatct
gagacccaagatccagaggaagtgtctgtcacagtcaaggccttcatgaccgctgacctt
cccaatgaactcatcgagcttctagaaaagattgtgttggataactccgtcttcagtgag
cacagaaacctccagaaccttctcattttgacagccattaaagctgatcgaactcgtgtc
atggagtacattaaccgtctagataactacgatgcccccgacatcgcaaacatcgccatc
agtaatgagctgtttgaggaggcctttgctatttttagaaagtttgatgtcaacacctct
gctgtgcaggttctgattgaacacattggtaacttggacagagcttatgagtttgctgag
cgctgcaacgagcctccagtgtggagtcagctggccaaggcccagctccagaaggggatg
gtcaaagaagccatagactcttacatcaaggctgatgacccttctgcttacatggaggtg
ggacaagctgcagcccaaagtggaaactgggaggacctggtgaagttcctgcagatggct
cgtaaaaaggctcgtgagtcatacgttgagacggagctgatctttgccctggctaaaacc
aaccgcctggctgagctggaggagttcatcaatggtcccaataacgctcacatccagcaa
gtgggtgatcgttgttatgacgataagatgtacgaggctgccaagttactttataacaac
gtgtccaactttggccgtcttgcgtccacgttagtgcacctgggagaatatcaggctgct
gtggatggagcccgcaaggccaacagtacccgcacctggaaagaggtgtgttttgcttgc
gtggatggaaaagagtttcgtctggcccaaatgtgtggcctgcatattgtcgtccatgcc
gatgaactggaggaactaatcaactattaccaggaccgtggttactttgaagagctaatc
acgatgcttgaggccgctctggggctggagcgtgctcacatggggatgttcaccgagctg
gccatcctctattctaagtttaagccccagaagatgagggaacatctggagctcttctgg
tctcgtgtcaacataccaaaggtgctcagggcagctgaacaggctcacctctgggctgag
ttagtgttcctctatgacaaatatgaggaatatgacaacgccatcatcacgatgatgaac
catccagctgatgcctggaaggaaggccagttcaaagatattgtcaccaaggtggcaaat
gtggagctgtactacaaggccgttcagttttatatggaattcaaaccattgttgctgaat
gacctgctcatcgttctctctccaagactggaccacacacgggctgtgaactacttcagc
aagatgaaacaactgcctctggttaaaccgtatctaaggtctgtccagaaccacaacaac
aagggagtgaacgaagcacttaacaacctcttcatcactgaggaagactatgcggcactg
cgaacatccattgatgcttatgataactttgacaacatctccctggcccagagtctggag
aagcacgaactaattgaatttcggaggatcgcagcgtaccttttcaaagggaacaaccgc
tggaaacagagcgttgagctctgcaagaaggacaagctctacaaggatgctatgcagtac
gcatcagagtccaaagacatcgagctggccgaggagctcttggcttggtttctcaacgaa
gacaagaaggagtgttttgccgcctgccttttcacttgctacgacttgctgcggccagac
gttgtgctggaaaccgcctggaggcacaacatcatggacttctctatgccgtacttcatc
caagtcatgagggagtatctcacaaaggtggacaaactcgaagcctcagagtctctgagg
aaacaggaggagcaggccacagagtctcaacccattgtttacggcacgccccagctcatg
ctcacagctgggcccaacatggctgtgcctcctcagcagacctacagctacggctacacg
gcagcaccagcctacaaccagccgccacagcccaactttggttacagcatgtga
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