Nematolebias whitei (Rio pearlfish): 119410580
Help
Entry
119410580 CDS
T08042
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119410580 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nwh03041
]
119410580 (prpf8)
Spliceosome [BR:
nwh03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
119410580 (prpf8)
Complex C
U5 SnRNP specific factors
119410580 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
119410580
NCBI-ProteinID:
XP_037533395
LinkDB
All DBs
Position
6:complement(27795922..27818595)
Genome browser
AA seq
2355 aa
AA seq
DB search
MAAPFPYRGLPPGMPPGVPPVLVPPIVPPGVAPIVPPSAPVPDYMSEEKLQEKARKWQQL
QAKRYAEKRKFGFVDAQKEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVL
KLLENMPMPWEQIRDVPVLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRH
FKRMRFPPFDDEEPPLDYADNILDVEPLEAIQMELDNEEDSPVVDWFYEHQPLKDTTKFV
NGTTYRRWQFTLPMMSTLYRLANQLMTDLVDFNYFYLFDLKAFFTSKALNMAIPGGPKFE
PLVRDINLQDEDWNEFNDINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFI
KTEDPDLPAFYFDPLINPISHRHSVKSQEPLPDDDEEFELPEYVEPFLKETPLYTDNTAN
GIALLWAPRPFNLRSGRTRRAIDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALK
HRPPKAQKKRYLFRSFKATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDY
NFNLKPVKTLTTKERKKSRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGLQY
IFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFF
MRGITPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEG
IKQNKARTILQHLSESWRCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRER
IRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESR
RFSPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSR
IKRHLLTQRAFKEVGIEFMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWI
KPADTEPPPLLVYKWCQGINNLQDVWETAEGECNVMLESRFEKMYEKIDLTLLNRLLRLI
VDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASE
MAGPPQMPNDFLSFQDTTTESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDP
NNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSK
DNPNLLFNMCGFECRILPKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRF
HNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIK
IGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHE
EDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAITQNRRLTLEDLEDSWDRGIPRIN
TLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGG
VEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSP
TINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQE
LDALEIETVQKETIHPRKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKY
WIDIQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFP
GGKPLIQQAMAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFV
DDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWK
TAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVE
KFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTT
ITEPHHIWPTLTDEEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPS
QQRQQIAEIEKQTKEQSQLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISA
ANLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVK
EIRCIVMVPQWGTHQTVHLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVM
ADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQ
MLLSDRFLGFFMVPGQVSWNYNFMGVRHDPNMKYDLQLANPKEFYHEVHRPSHFLNFASL
QEGEIYNADREDMFG
NT seq
7068 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgccttttccttacagagggctccctccagggatgccaccaggcgtacctcct
gttcttgtccccccgattgtccccccaggtgttgccccaattgtccccccttccgcacct
gtcccggattacatgtctgaggagaagctgcaagaaaaagcaaggaaatggcagcaattg
caggccaagcgctacgcagaaaaaagaaagtttggctttgtggatgcccagaaggaggac
atgccccctgaacatgtccgcaagatcattagggaccatggagatatgaccaacagaaag
ttccgacatgacaaaagggtgtaccttggtgccctcaagtacatgccccacgcagtgctg
aaactgcttgaaaacatgccgatgccctgggaacaaatccgagatgttcctgtgctctat
cacatcactggagccatttcctttgtgaatgaaatcccatgggttatagagcctgtctac
attgcccagtggggcaccatgtggatcatgatgcgtcgtgagaaacgtgatcgacgacac
ttcaagagaatgcgctttcctccatttgatgacgaggagccgccgctggactatgctgac
aacatccttgatgtggagcctctggaggccatccaaatggagctcgataacgaggaagat
tctcccgttgtggattggttctatgagcatcagcccctcaaagacactaccaagtttgtg
aatggcaccacttaccgtcgctggcagttcaccctgcccatgatgtccacactgtatcgt
ctggccaatcagcttatgacagacctggtggattttaattacttttatctgtttgacctc
aaggcctttttcacatctaaagccttgaacatggccatcccaggaggaccaaagtttgag
ccgctggtcagagacattaacctccaggatgaagactggaacgagttcaacgacatcaac
aaaatcatcatccgtcagcccatcaggacagagtacaaaattgctttcccctacttgtac
aacaacttaccacatcatgtgcacctcacctggtaccatacaccaaatgtggtatttatc
aaaacagaggatccagatcttcctgcgttctactttgatccactgatcaaccctatttct
cacagacattctgtcaagagccaggagcccctccctgatgatgatgaggagtttgagctt
cctgaatatgtggagcccttcctcaaagagactccactctacactgacaacacagctaac
ggcattgctctgctttgggctccaagacccttcaatctccgctctggtcgcacaaggcga
gccatcgatatccctctggtcaagaactggtaccgagagcattgccctgcaggacagccg
gtgaaagtacgtgtttcgtaccagaaactgctgaaatactatgtgctcaatgcactcaaa
cacagaccgcccaaggctcaaaagaaaagatatctgttccgctccttcaaagccacaaag
ttctttcagtccactaagctggactgggtggaggtcggcctgcaggtgtgcaggcagggc
tacaacatgctcaatctgctcattcaccgtaagaatcttaactacctgcatctggactac
aacttcaacctgaaacccgtgaagacactgaccaccaaggagcgaaagaagtccagattt
ggcaacgccttccatctgtgcagagaggtgctgcgtctcagcaagctggtggtggacagc
cacgttcagtacagactgggaaatgttgacgctttccagttgtctgacgggctgcagtac
atctttgctcatgtgggtcagctgacaggcatgtatcgctacaagtacaagctgatgagg
caaatccggatgtgcaaagacctaaaacatctcatctactaccgattcaacactggtcct
gtgggcaaaggtcctggttgtggcttctgggccgctggctggagagtgtggctcttcttc
atgaggggcattactccactgttggagaggtggcttggaaatctcctggccaggcagttt
gaaggacgccactcaaagggtgtggccaagaccgtgaccaaacagcgtgtagagtcccac
tttgacctggagttgcgtgctgcagtgatgcacgacatcctggatatgatgcctgaaggt
atcaagcagaacaaggccagaaccatcctgcagcatctcagcgaatcctggagatgctgg
aaggcaaacatcccatggaaggtccccggccttcccactcccattgagaacatgatccta
cggtacgtgaaggccaaagctgactggtggacaaacacggctcactacaaccgtgagcga
attcgcagaggagccaccgtggacaagacggtgtgcaaaaagaacctgggcaggttgacc
cgtctgtacctgaaagctgagcaggagcgacagcacaactacctgaaggatggcccctac
ataacagcagaagaggctgtggcgatttacaccaccacggtgcactggctggagagtcgg
cggttctctcccatacctttccccccattgtcctacaaacatgacaccaagctgctgatc
ctggccctggagaggctcaaagaggcatacagtgtgaagtctcgtctgaaccagagtcag
agggaggagctgggtttgatcgagcaggcctatgacaaccctcacgaagctctgtccagg
atcaaacgtcacctgctcacgcagagagcgttcaaggaggttggtattgagttcatggac
ttgtacagccaccttgtaccagtgtacgatgtggaacctttggagaagatcacagatgcc
tacctggatcagtacctgtggtacgaggcagacaagaggcgtcttttcccaccgtggatc
aaacctgccgacactgaaccaccacctctgctggtctacaagtggtgccaaggcatcaac
aacttgcaggacgtgtgggaaactgcagagggagagtgtaacgtgatgctggagtctcgc
tttgagaagatgtatgagaagattgatctgacgttgctcaataggctgctgcgtctcatt
gttgaccacaacattgctgattacatgacagccaagaacaatgtggtcataaactacaag
gacatgaaccacaccaactcctatggcatcatcagggggctccagtttgcctcgttcatt
gttcagtattatggcctcgttatggacctgctggtgctcggattacaccgtgccagcgag
atggctggtccaccgcagatgcccaacgacttcctcagtttccaagacaccaccaccgag
agcgcccatccaatcagactgtactgccgctacatcgaccgcatacacatcttcttcagg
ttctcagccgacgaggccagggacctgattcagcggtacctgacagagcatccagacccc
aacaatgagaacatagtgggttacaacaacaagaagtgctggcctcgagatgctcggatg
agactaatgaagcacgatgtcaaccttgggcgagcagtgttttgggacatcaaaaatcgc
ctgcccagatctgtgaccactgtgcagtgggagaacagctttgtgtcagtttacagcaaa
gacaaccccaacctgctctttaacatgtgtggatttgagtgccgcatcctccccaagtgt
cgcaccagctatgaggagttcactcacaaggatggagtctggaacctgcagaatgaggta
actaaagagaggacagcacagtgtttcctgcgtgtggacgacgaatcaatgcagcgcttc
cacaacagagtgcgtcagatcctgatggcctctgggtccacaactttcaccaagattgta
aacaagtggaacaccgctctgatcggtctgatgacgtacttccgtgaggctgtggtcaac
acacaggagctcctggatcttctggtgaagtgtgagaacaagattcagacgcgtatcaag
attggtctcaactccaaaatgcccagccgcttccctccagtggtcttctacacgccaaaa
gagttgggaggcctcggcatgctgtccatgggacacgtgctcatcccacagtcagacctg
cggtggtccaagcagacagatgtaggcatcacccacttcagatctggaatgagccacgag
gaagaccagctcattcccaacttgtatcgttacattcagccatgggagagcgagttcatt
gactcgcagagagtctgggctgagtacgccctcaagagacaggaggccattacccagaac
agacgtctcaccttggaggatttggaggactcgtgggacagaggaatacctcgaatcaac
acacttttccagaaggacagacacacgctggcctacgacaagggctggagagtcaggaca
gatttcaaacagtatcaggtgctgaagcagaatccattctggtggactcaccagagacat
gacggtaaactgtggaacctgaacaactaccgcacagacatgatccaggcactgggtggt
gtggagggcatcctggagcacacgctcttcaagggcacttatttccccacctgggagggt
ctcttctgggaaaaggccagtggttttgaagagtccatgaaatggaagaagttgaccaat
gctcagagatctggtctcaaccaaatcccaaaccgtcgctttactctctggtggtcgccc
accatcaacagggccaacgtgtatgtgggtttccaagtgcagcttgacttgacaggcatc
ttcatgcacggcaagattcccactctgaagatctccctcattcagatcttcagggctcac
ttgtggcagaagattcatgagagcatcgtcatggatctctgtcaggtgtttgaccaggag
ctggatgctttggagattgagactgtgcagaaggagaccatccaccccaggaagtcgtac
aagatgaactcgtcctgcgcggacatcctcctcttcgcatcatacaagtggaacgtctcc
cgaccatctctgctcgctgactcaaaggatgtgatggacagcaccaccacacagaaatac
tggattgacattcagctccgatggggagactatgactctcatgacattgagcgctacgcc
agagccaagttcctggactacaccacagacaacatgagtatctacccctcccccactgga
gtgctcattgccatagacctggcttataatctgcacagtgcgtatggtaactggttccct
ggaggaaagcctctgatccagcaggccatggccaagatcatgaaggccaacccggctctt
tatgtgctccgagagcgcatccgtaaaggtctgcagctgtactcttcagagcccactgag
ccttacctgtcctcccagaactatggtgaactcttctccaaccagatcatctggtttgtg
gatgacacaaatgtgtacagagtcaccatccacaagacttttgagggaaacttgaccacg
aagcccatcaatggagccattttcatcttcaaccccaggactggacaactcttcctcaag
atcattcacacgtctgtgtgggctggacagaaacgtctgggacagctggctaagtggaaa
acagctgaagaagttgctgccctgattcgctccctccccgttgaagagcagccaaaacag
atcattgtaaccaggaaggggatgttggaccctctggaggtccatctgctcgacttcccc
aacatcgtgatcaagggctcggagttgcagctgcctttccaggcctgtctgaaggtggag
aagtttggagacctgatcttgaaggcgacagaaccacagatggtcctgttcaacctctac
gatgattggctgaagaccatttcatcgtacacagccttctcccgtctcatcctgatcctc
agagctctccatgtcaacaatgaccgagcgaaggtgatcctgaagcctgataagacgacc
atcactgaaccccatcacatttggcccacgctcaccgatgaggagtggatcaaagtggaa
gtgcagctcaaagatctcattctggctgattatggcaaaaagaacaatgtgaacgtggcc
tcgctgacccagtcggagatccgtgacatcatcctgggaatggagatctcagccccgtca
cagcagcggcagcaaatcgcagagattgaaaagcagaccaaagaacagtctcagctcacc
gccacgcagacccgcaccgtcaacaagcacggagacgagatcatcacctccaccacctcc
aactacgagacgcagaccttctcctctaagaccgagtggagagtcagggccatatctgcc
gccaacctccatctccggaccaaccacatctacgtgtcatctgacgacatcaaggagacg
ggatacacctacattctgcccaaaaatgtcctcaagaagtttatctgcatctcagatctg
agggctcagattgcaggatacctgtacggcaccagcccaccagacaacccccaggtgaag
gagatccgctgtatcgtcatggtgcctcagtgggggacgcatcagaccgtccacctccct
aaccagctgcctggccacgaatatctcaaagaaatggagcccctcggctggatccacaca
cagcccaacgagtcgccacagctgtccccccaggacgttactacgcacgcaaaggtcatg
gctgataacccgtcctgggatggagaaaaaaccataataatcacttgcagcttcacacct
ggctcctgtacactcacagcctacaaactgacacccagtgggtacgagtggggtcgacag
aacacggacaagggcaacaaccctaaaggttaccttccatcccactatgaaagggtacag
atgcttctctctgatcgcttcctgggcttcttcatggtgcccggccaggtctcctggaac
tacaacttcatgggtgtgcgccacgatcccaacatgaagtacgacctgcagctggccaac
cccaaagagttctaccacgaagtccatcggccctcgcacttcttgaactttgcctcgctg
caagagggagagatttacaacgctgaccgcgaggacatgttcggctga
DBGET
integrated database retrieval system
