Nematolebias whitei (Rio pearlfish): 119410829
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Entry
119410829 CDS
T08042
Symbol
brip1
Name
(RefSeq) Fanconi anemia group J protein
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03440
Homologous recombination
nwh03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
119410829 (brip1)
03460 Fanconi anemia pathway
119410829 (brip1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nwh03400
]
119410829 (brip1)
Enzymes [BR:
nwh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119410829 (brip1)
DNA repair and recombination proteins [BR:
nwh03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
119410829 (brip1)
FA (Fanconi anemia) pathway
Downstream FA components
119410829 (brip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
Motif
Other DBs
NCBI-GeneID:
119410829
NCBI-ProteinID:
XP_037533678
LinkDB
All DBs
Position
6:complement(52634025..52866818)
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AA seq
1178 aa
AA seq
DB search
MAASSVEYTVGGVKIHFPCKAYPSQLAMMNSIIRGLNYGQHCLLESPTGSGKSLALLCST
LGWQQTQLAKLQEQGGSMGDRSPSDKTSDDCKKIEAPNSCRCVCHSKAAGQPAVMDLTVL
PCQDTAQTSTTQPDLVPLPETSQKETTIVSRRSEKCQAFLSSHCDKDDDFRTDRKRTAKH
KSHKRQRLQKGVIFIDDHEPELEKETSGLESWSAASEVQTDGLSSSCHVSEPCTYCPCAS
AKDNVKDKDNDGRKRIPKIFFGTRTHKQITQIAHELKRTAYTGVKMTILSSREHTCVNPD
VVPHFNRNERCKDLLEAKDGMSCRYYHRVQKMRDQHILQWVHGLREAWDIEDLVSLGKRL
HSCSYYAARELVQGASIIFCPYNYLLDPMIRDSLEIDLAGQILVLDEAHNIEDCARESAS
FTVDHNTLQVSIDDLDGMVNSNIRRSKHLPLRDFCYVLFNWIQESQVLLSERAYEIASKV
WGGKDILSIFHSFGITADSVHILEQNLTEVLEKEEHVGSVGGKEDTVQFPTINSSTSTML
KNLFMVLDFLYMENSRFADDYRIALQRTYTWTNQVPPDVTDAQGFFIRPRPRHRQNVRLK
KEVLTLSFWCLNPAVAFSNLSKSVHSIVLTSGTLSPMDSFSSELDVKFTIQLEANHVVNQ
SQVWVGTVCSGPQGRQLRATFQHAETYAFQDEVGALLLHICQVMAKGVLCFLPSYKMMDK
LRDRWVNTGLWEKLEQQKTVITEPHGSGKGDFNELLQIYYDTIKHCEGTGGALLIAVCRG
KVSEGLDFTDDNARAVVTIGIPFPNIKDLQVELKMKYNDQHCKSRGLLPGHRWYEIQAYR
ALNQALGRCIRHRNDWGALILVDDRYRNNPNKYITGLSKWVRQLVQYPNSFDDAMKSLVA
FSQRQQKVEGAPADNQTLSIVGLSTRNQSLTKAPEVHTCSSSDKPPEAQQDRSTQLNAKH
NKEAEPSKMLQFGPAKLPSDQRGAAQPLFSLFTCSRSTKFKKPIFKAHETTQMSPPLLNP
EALCPEQTIRNIPSETRRESKNPPTNSPSCEGDEEEDKSFFFTPELFEGEKNLDSPQKEN
SESTPRFVPKTESSPPLSEELFGSDQDSRSAIPLDGQGSVSVRKELSQKQEEQKADEKAG
GHEVQSRQTRKRLHRLSRSRQRSPLTQASHDKTQHKIV
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atggcagcatcctctgtggagtatactgtcgggggggtgaagatccactttccctgcaag
gcttacccatcccagctggccatgatgaactcgataataagagggttgaactacggtcag
cactgtttgctggagagtcccacaggcagtggaaaaagtctggccttactctgctccact
ttgggctggcagcaaactcagcttgctaaactacaggaacaaggtggttccatgggagac
aggagcccgtcagataaaacctcagatgactgtaagaagatagaagctcccaactcgtgt
cggtgtgtgtgtcacagcaaagcagctggccaaccagctgttatggatctcaccgtgctg
ccatgccaagatactgcgcagacctcaaccacacaaccagaccttgttccattaccagaa
acgtctcaaaaggaaacaactatagtctctcgtaggtctgaaaagtgtcaagcttttttg
agttctcattgtgacaaggatgatgactttcgaacagacaggaaacgtactgccaagcac
aagagtcataaaaggcagcgtctccagaaaggagttatctttatagatgatcatgaacct
gagctggaaaaggagacatcaggtcttgagagttggagtgcagcatcagaagtccagaca
gatggtttgtcctcatcttgccatgtctctgaaccctgcacctattgtccgtgtgcatca
gccaaagacaatgtgaaggacaaagacaacgatggcaggaagaggattccaaagattttt
tttggaacacgcacacataaacaaataactcaaattgcacatgaattaaaacgcacagct
tacactggcgttaaaatgactatcttgtccagcagagagcacacctgtgtcaatccagat
gtggtgcctcatttcaaccgcaatgagcgatgcaaggatctacttgaagccaaagatgga
atgtcatgccggtactaccaccgtgttcagaagatgcgggaccagcacatcctacaatgg
gttcatggactacgtgaagcgtgggacattgaggacctggtctctctaggaaaacggctc
cactcatgctcttactatgctgctcgcgaacttgtgcagggggcctctatcatcttttgt
ccctataactatctcctggacccaatgatcagggacagtctggagattgacctggcaggc
cagatcttggtgctggatgaggcccacaacattgaagactgtgcgagggagagcgccagc
ttcactgtagatcacaacactttgcaggtgtccatagatgatctggatggcatggtcaac
agcaacattagacgctccaagcatttgcctcttagagacttttgctatgtcttatttaat
tggattcaagagagccaagtcttactatctgaacgtgcatatgagattgccagcaaagtt
tggggtggaaaggatattctaagcatctttcatagctttggcatcactgcagacagcgta
cacatcttggagcaaaatctgacagaagtgttagagaaagaagagcatgttggttcagtc
ggtggtaaggaggacacagtgcagttcccaaccataaactcatctacctctactatgctc
aaaaatctattcatggttctggatttcctctacatggagaacagccggtttgccgacgat
taccgcatagctttgcagaggacctacacttggacaaatcaagtcccgcctgatgtcact
gatgcccaaggctttttcattcggccacgtcctcgtcatcgtcagaatgtgcggctcaag
aaagaagtcctaacattgagtttctggtgcctcaacccagctgtggctttctctaacttg
agtaagtcggtgcacagcattgtattaacatcaggaaccctttcacccatggactcgttt
tcctctgaacttgatgtgaaattcaccattcagctggaggctaatcatgtggtcaaccaa
tctcaggtttgggtgggtactgtttgttcagggccccaaggtcgacaactccgtgccacc
tttcagcatgctgaaacgtatgcttttcaggatgaggtgggcgccttgctgctgcacatc
tgccaggtcatggccaagggtgtgctctgctttctgccttcctacaagatgatggacaaa
ctgcgagaccgttgggtcaacactggtctgtgggaaaagctggaacaacagaaaactgtc
atcacagagcctcatgggagtggcaaaggagattttaatgagctgcttcagatatactac
gacactattaaacactgcgaagggacaggtggtgcactgcttattgctgtgtgcaggggt
aaggtcagcgaaggcctggactttacagatgacaatgccagagcagtggtcactattgga
attccatttccaaacatcaaagacctccaggtggaactgaagatgaagtacaatgaccag
cactgcaagtccagaggtcttcttcctggccatcgctggtatgagattcaggcctacaga
gctctcaaccaggccctggggagatgcatccgccacaggaatgactggggtgccctcatt
cttgtagatgaccggtacaggaataatcctaataagtacatcacaggtttgtctaaatgg
gtccgtcagcttgtccagtatcccaacagcttcgacgatgccatgaagtctctggtagcg
ttctctcagaggcagcagaaggtggagggggcccctgctgacaaccagactctcagcatt
gttggcttatcaaccaggaaccaaagcctgaccaaagctccagaggttcatacatgcagc
tccagtgacaaaccacctgaagcccagcaggacagaagtacacaactgaacgccaaacac
aataaagaagcagagccatcgaagatgctgcagttcggcccagcaaagctcccgtctgat
cagcgtggagccgctcagcctttgtttagccttttcacctgcagccgcagcaccaagttc
aagaagccaatatttaaagcacatgagacaacacagatgtcccctccactgctgaatcct
gaggcactttgccccgagcagaccatccgaaacattcctagtgaaaccagaagagaatca
aaaaatcccccgacaaactcccccagctgtgaaggtgatgaagaagaggacaaaagtttt
ttttttactccagaactttttgaaggtgaaaaaaatctagatagtccacaaaaagagaac
tctgagtcaactcccagatttgtcccaaagacagagagttcaccgcccctgtcagaggag
ttgttcgggtcagaccaggacagcaggtcagccatccctttggatggacagggttctgtt
tcagtcagaaaggagctgtcacagaaacaggaagaacaaaaagcagatgagaaagcaggg
ggacatgaggtccagagcagacagaccagaaaaagacttcacaggctgtccaggtccaga
cagaggtctcccctcactcaggcaagtcacgacaaaactcaacacaaaatagtgtag
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