Nematolebias whitei (Rio pearlfish): 119410835
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Entry
119410835 CDS
T08042
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 2-like
KO
K05045
solute carrier family 6 (neurotransmitter transporter, betaine/GABA) member 12
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
119410835
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
nwh02000
]
119410835
Transporters [BR:
nwh02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
119410835
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Gene cluster
GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
119410835
NCBI-ProteinID:
XP_037533685
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Position
6:21177393..21201178
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AA seq
540 aa
AA seq
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MGKEGAPKLMHPEVEERGHWGSKVEFLLAVAGNVVGLGNVWRFPYLCYKNGGGAFLVPYF
VFVVTCGVPLFLLETVVGQYTQEGGITCWRTLCPLAEGIGYGGQLILLYSCMTYIIILSW
ALFYLAFSFSTQLPWASCNNYWNTDECVDFSSGNETIHWTNKTNLTSAATEFWERRVLAI
SGGIEELGNIRWEVLLCLIVMWVVCYFCIWKGVKSTGKVVYFTATFPYVMLIILLIRGLC
LPGAFEGVVFYLLPNPSRLTDPQVWMEAGAQIFFSYSVGVGSLTVLGSYNTYNNNCYSGT
SIVAGFAVFSVLGFMAHEQGVPIAEVAESGPGLAFIAYPQAVAMMPFPQLWSVFFFVMLI
LLGLDTQFVAMEVVMTSIIDMFPRVMRRAGRREWFLLIFCLICFFSQLFMITEGGMYVFQ
LFDYYACNGTCILFLSVFETLALGWVFGAERLYNIIKDMTGVHLNPLFKICWLYLTPLVS
LGSFICSLVEYQPLTFNRWYVYPSWAYVLGWVLALSSILLVPGWAFYKLCTGTGTLSQDL
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaggaaggtgctccaaaactgatgcatccagaggtggaggagagaggacactgg
gggagtaaggtggagtttctcctggctgtggcaggaaatgttgttggcctcggcaacgtg
tggaggtttccttacctctgctacaaaaatggagggggtgcattcttggtgccatatttt
gtatttgtggtgacttgtggggtaccccttttcctgctggagacagtagttggtcagtat
acccaggaaggcggcatcacatgctggaggacgttgtgcccacttgcagaaggtataggc
tatggtggccagctaattcttctctacagttgtatgacttacatcattattctgtcgtgg
gctttattctacctggcattctccttcagcacccaactcccgtgggccagctgcaacaac
tactggaacacagatgagtgtgtagacttttcatcaggaaatgagaccatccattggacc
aacaagacaaatttgacttctgcagccaccgaattctgggaacgacgggtgctggctatt
tcagggggtattgaagagttgggcaatatcaggtgggaggtgctgttgtgccttattgtg
atgtgggtggtctgttacttttgcatctggaaaggtgtcaagtcaacaggaaaggtggtg
tattttactgccacctttccctatgtgatgctaataatacttttgattcgaggactctgt
ctacctggtgcttttgaaggagtagtgttttatcttctgcccaatccatcacgacttaca
gaccctcaggtgtggatggaagctggtgctcagattttcttctcatacagtgttggtgtg
ggttcccttactgtgctaggcagctacaacacatacaacaacaactgctacagtggtacc
agtattgtagctgggtttgcagtcttctctgtgctgggattcatggctcatgagcaaggt
gttcccattgcagaagtggcagaatcaggtccaggtttggcgttcattgcataccctcag
gctgtagccatgatgccctttccccaactgtggtccgtcttcttctttgtcatgcttatt
ctcctgggactggatacacaatttgtggccatggaggtggtgatgacatccatcatagat
atgttcccaagagttatgcgcagggcaggacggcgggagtggttcctcctcattttctgc
ctaatttgcttcttttctcagctcttcatgatcaccgaaggtggaatgtacgtgtttcag
ttatttgactactacgcatgtaatggaacctgcatcctctttctcagtgtgtttgaaact
ctagcgttgggatgggtatttggggcagagaggttgtacaacatcataaaagatatgact
ggtgttcatctgaacccactcttcaagatctgctggctctatctcactccgctggtctca
ctgggatctttcatatgttctttagttgaataccagcctctgaccttcaatcgttggtat
gtgtatccatcctgggcatatgtgctgggatgggttctggctctctcctccatcctgctt
gttcctggatgggcgttttacaaactgtgcactggaactgggaccctcagtcaggactta
taa
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