Nematolebias whitei (Rio pearlfish): 119410935
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Entry
119410935 CDS
T08042
Symbol
pkd2l1
Name
(RefSeq) polycystic kidney disease 2-like 1 protein
KO
K04990
polycystin 2L1
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
nwh03037
]
119410935 (pkd2l1)
04040 Ion channels [BR:
nwh04040
]
119410935 (pkd2l1)
Cilium and associated proteins [BR:
nwh03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
119410935 (pkd2l1)
Ion channels [BR:
nwh04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
119410935 (pkd2l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PKD_channel
Polycystin_dom
Ion_trans
Fer4_24
EF-hand_6
MCM_C
Motif
Other DBs
NCBI-GeneID:
119410935
NCBI-ProteinID:
XP_037533787
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All DBs
Position
1:complement(46249309..46256560)
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AA seq
804 aa
AA seq
DB search
MKCLNNRAESHLTGQVESQVDSLVNGGGWVNHGYRGSPPPIPRVVSTIYSPQSHFQGSVD
SVYKLDTPGRITEEAPSSSSDQVSKKKSCCSFIKGLWGTAWTENTLNNREKYIQTTLREL
LVYTLFLVDVCLLTYGMTSTSAYYFTNAMTNLFVNTAGVSGVTFQSIGTMDDFWTYAQGP
LLDGLYWTRWYNNESLDSGDQSFIYYENMLLGVPRIRQIKIKNNSCQVHQDFKNEISGCF
DVYNEKKEDDLSFGLINGTAWTYHTEKDIKGSSYWGLLTTYSGAGYYQDLNRTKEVSANV
LTELMDNVWLDRGTRVVFIDFSTYNANVNLFCVIRLVVEFPATGGAIPSYQIRTVKLIRY
ITTWDYFILGCELVFCVFIFYYVVEEILELQIHKFAYFKSIWNILDIVVILLAIVAIIFN
IFRTVKVDNLLGKLLEQPGIYADFEFLAFWQTQYNNMNAVNLFFAWIKIFKYISFNKTMT
QLSSTLGRCAKDILGFAIMFFIVFFAYAQLGYLIFGMEVDSFSTFVKCIFTQFRIILGDF
DYNAIDRANRVLGPIYFVTYVFFVFFVLLNMFLAIINDTYSEVKEELSSQKDELQITDII
KQSYMRTFTKLKLKKEKISDVQKALQSGSGEIEFKDFRETLKEMGHADHEISAAFSQFDR
DGNQILDAKEQERMKMELEEKRDALNTELNNLGKNYEEKLLEKSPVAPNEQRTTPSSRVF
VDREQFLRLTRQVLQMENSVTGITAKVDLIMEKLKLQENSEKNTTNDDKSSCGGPVLDRA
DRTKAVRSSRKTVDRADRTFNSHM
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgaagtgtctgaacaaccgggctgagagccacctgacgggtcaggtagagtctcaggtg
gacagcttggtgaacggagggggctgggtcaaccacggctaccgtgggtcccctccacca
atcccccgtgtggtcagcaccatctacagtccacagtcccactttcagggctctgtggac
agcgtctacaaactggacaccccgggccggatcacagaggaggccccctcctcctcttca
gaccaagtttcaaagaagaagagctgctgctcttttattaaagggttatggggtacagca
tggaccgaaaacaccttgaacaaccgggagaagtatatccagaccaccctgcgggagtta
ctggtctacacgttgttcctggtagacgtttgcctcttgacgtacggcatgacgagcacg
agcgcctattatttcaccaatgccatgacgaacctgttcgtgaatacagccggtgtgagt
ggagttacgtttcagtccattggcaccatggacgacttctggacctatgcccagggtcct
ttactagacggcctttactggaccagatggtacaacaacgagtccctggacagcggagac
cagtcgttcatctactatgagaatatgttgctgggtgttcccaggataaggcagatcaag
atcaagaacaactcctgccaggtccatcaagactttaagaatgagatcagtggatgtttt
gatgtctacaatgaaaagaaagaggatgacctcagttttggtctcatcaatgggactgcc
tggacctaccacacagaaaaagatatcaaaggttcctcctactggggactgttgaccact
tatagtggagcaggatactatcaagacctaaatcggacaaaagaggtgagcgccaacgtc
ctgactgaactgatggacaacgtctggctggatcgaggaacccgggtcgtcttcattgat
ttctccacatacaacgcaaatgtcaacttgttctgtgtcatcaggttggtggttgaattt
ccagcaactggtggagcgatcccgtcctaccagatcagaacagtgaaactgattcgttac
attaccacctgggattattttatcctcggctgtgaactggtcttctgtgtattcatcttc
tactatgttgtagaagaaattttagagctacagatacacaagttcgcctattttaaaagc
atttggaacattctggatattgtcgtcattttgcttgcaattgttgctataatctttaat
attttcagaactgtcaaagtggacaacttgcttggcaagctattagaacaacctggaatc
tatgctgattttgagtttctggctttctggcaaacccagtataacaacatgaatgcagtg
aacttattttttgcctggatcaagatttttaagtacatcagtttcaacaaaacgatgacg
caactgtcctccacgctgggacgatgcgccaaagacatcttggggtttgccatcatgttc
ttcattgttttcttcgcctacgctcagctcggatatttaatctttggaatggaggtggac
tccttcagtacctttgtaaagtgcatatttacacagttccgaatcatcctcggagacttt
gattacaacgccatcgatcgtgcaaaccgagttcttgggcccatctacttcgtcacctac
gtgttctttgttttctttgttctgctgaacatgtttctggcgattataaatgacacgtat
tcagaggtgaaggaggaactgtcgtcccaaaaagacgagctgcagattactgacatcatc
aagcagagctacatgaggacgttcacaaagctgaagctaaaaaaagaaaaaatatcagac
gttcagaaagctcttcagtccggatccggagaaatcgagttcaaggacttcagagaaact
ctgaaagagatgggacacgccgatcatgaaatatctgccgctttctcgcagttcgaccgc
gacgggaaccagattctagacgcaaaggaacaggagaggatgaagatggagctggaggaa
aaaagggatgctctcaacacggagctgaacaatcttggaaaaaattacgaggaaaagttg
ctggaaaagtctcccgttgcaccgaacgagcaaagaacgacgccctcgagtcgagtcttt
gtggatcgggaacagtttctgagactgaccagacaggttctccaaatggaaaactctgta
accggcatcacagcaaaggttgatctgatcatggaaaaactaaaactgcaagaaaactct
gaaaagaacacgactaatgatgataaatcctcctgtggcggtccggtcctggatcgtgct
gacagaaccaaagccgtacggtcatccagaaaaaccgtggaccgcgcagaccgcacgttc
aactcccacatgtga
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