Nematolebias whitei (Rio pearlfish): 119410936
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Entry
119410936 CDS
T08042
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03030
DNA replication
nwh03420
Nucleotide excision repair
nwh03430
Mismatch repair
nwh03440
Homologous recombination
nwh03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
119410936 (rpa1)
03420 Nucleotide excision repair
119410936 (rpa1)
03430 Mismatch repair
119410936 (rpa1)
03440 Homologous recombination
119410936 (rpa1)
03460 Fanconi anemia pathway
119410936 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nwh03000
]
119410936 (rpa1)
03032 DNA replication proteins [BR:
nwh03032
]
119410936 (rpa1)
03400 DNA repair and recombination proteins [BR:
nwh03400
]
119410936 (rpa1)
Transcription factors [BR:
nwh03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
119410936 (rpa1)
DNA replication proteins [BR:
nwh03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
119410936 (rpa1)
DNA repair and recombination proteins [BR:
nwh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
119410936 (rpa1)
MMR (mismatch excision repair)
119410936 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
119410936 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
Motif
Other DBs
NCBI-GeneID:
119410936
NCBI-ProteinID:
XP_037533784
LinkDB
All DBs
Position
6:complement(37532884..37568903)
Genome browser
AA seq
570 aa
AA seq
DB search
MTKLSEGAIEALGNGSGWNEAVLQLVNIRKIDGGNGPVRFRVMMSDGRHTLSSFMLTTQL
NYMAEENILVQNCVCNLKRHVTNILKDGRRVIIILEIDVLDEEVDGRIGDPTPYFDGQNK
SLQQAPAPVPPARPPLQQQHNKTEVSRGYKRDLFKTAPSATPNTPGGGSKVVPIASLNPY
QSKWTVRARVTNKSSIRTWSNSRGDGKLFSMEIVDESGEIRVTGFNQEVDKFYSLIEAGK
VYYFSKGSLKIANKQYTSVKNDYEMTLNGESTIIPCEDSCDVPVVQCDFVSIGDLENRDK
DAIVDVIGVCKSVDEVTRLTTKTNREVSKRTLSLMDMSGKMVTVTLWGEEAEKFDGAGQP
ILAIKGAKLSDFGGRSLSASFSSTMMINPDIPEAYKLRGCTSFQTPEGPGTPADYYSCTA
TIVYLRKENCLYQACPSQDCNKKVVDQQNGMFRCEKCDKEFPNFKYRLILSANIADYGDN
QWVTCFQESAEAILGQNAAYLGQLKDSNEAAFDEVFQQANFNTFVFHNRVKMETYNDESR
IKATVLMAMPVDHIDYIKRMIVNIRFMAAK
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaactgtccgagggcgcgatagaggccttgggaaatggcagcggttggaacgaa
gcagttctgcagttggtgaacatacgcaagatagatggaggaaatgggccagttcgcttt
agggtgatgatgagcgatggacgtcacactctctcatcttttatgctcaccacccagctg
aactacatggctgaggagaacatactggtccaaaactgcgtgtgcaatctcaagagacac
gtgaccaacatactgaaggatggacggcgagtcataatcattttggaaatcgatgttctt
gatgaagaggttgatggtagaattggagaccctactccttactttgatggtcaaaataaa
agcctccagcaagcgccagcaccagtccctccagccagacccccactacagcagcaacat
aacaagactgaagtgagcagaggttacaaaagagatttgttcaagacggctccatctgct
acaccaaatactccaggggggggctccaaagttgtgcctattgccagcctcaacccctac
cagtccaagtggacagtccgtgcccgtgtaaccaacaagagcagcattcgtacgtggagc
aactctcggggtgatggcaaactcttctccatggagatcgtagatgagagtggtgaaatc
cgcgttactggcttcaaccaagaagtggacaagttttattctttgatcgaagctggcaag
gtctactacttctccaaaggttcgctgaaaattgccaacaagcagtacacgtcggtgaaa
aacgactatgagatgacgctcaacggggagtccaccatcatcccctgtgaggacagctgt
gacgttcccgtggtgcaatgtgactttgtctccatcggtgacttggagaacagagacaag
gatgccattgttgatgtgatcggagtgtgcaagagtgtggacgaggtgacccgcctcaca
acaaagacgaaccgtgaagtttccaagagaacactaagtctgatggacatgtctgggaag
atggtgacagtcacactgtggggagaggaggcagaaaagtttgatggcgctggacaacct
attcttgccattaagggtgcaaagctctcagactttggaggccggtcgctttctgcgtcc
ttcagcagcaccatgatgatcaaccctgatatcccagaggcgtacaagctcagaggctgc
accagctttcagacccccgagggtccagggaccccagccgactactacagctgcacagcc
accatagtgtatctccgtaaggagaattgcctttatcaggcctgcccgagtcaagattgc
aacaaaaaagtggtggaccagcagaacggcatgttccgctgcgagaagtgtgataaagag
ttccccaacttcaaataccgcctcatcctgtctgccaacattgcagattatggggacaac
cagtgggtgacttgcttccaggagagtgcagaggccattctgggccagaatgcagcttac
ctgggccagctcaaagattcgaatgaagctgcgttcgatgaagtcttccagcaggcaaac
ttcaacactttcgtcttccacaacagagtgaagatggagacatataatgatgaatcgagg
attaaagccacagtgctgatggcgatgccggtcgatcacatagattacatcaagaggatg
atagtgaacatacgcttcatggctgcaaagtaa
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