Nematolebias whitei (Rio pearlfish): 119411340
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Entry
119411340 CDS
T08042
Symbol
brca2
Name
(RefSeq) breast cancer type 2 susceptibility protein
KO
K08775
breast cancer 2 susceptibility protein
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03440
Homologous recombination
nwh03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
119411340 (brca2)
03460 Fanconi anemia pathway
119411340 (brca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nwh04121
]
119411340 (brca2)
03036 Chromosome and associated proteins [BR:
nwh03036
]
119411340 (brca2)
03400 DNA repair and recombination proteins [BR:
nwh03400
]
119411340 (brca2)
Ubiquitin system [BR:
nwh04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
119411340 (brca2)
Chromosome and associated proteins [BR:
nwh03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
119411340 (brca2)
DNA repair and recombination proteins [BR:
nwh03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
119411340 (brca2)
FA (Fanconi anemia) pathway
Downstream FA components
119411340 (brca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_helical
BRCA2
BRCA-2_OB3
BRCA-2_OB1
BRCA2DBD_OB2
BRCA2_TR2
Tower
Motif
Other DBs
NCBI-GeneID:
119411340
NCBI-ProteinID:
XP_037534210
LinkDB
All DBs
Position
6:39983560..39998218
Genome browser
AA seq
2966 aa
AA seq
DB search
MDLSVKTMHDTFKDEIWKELGPLNPNWFEVLTAQTSPKERIVADKDDLCANQEGNFKTPS
EKTAVDSQLFSTPNVFRHSRVVSPETKDEQSFTNTHGRGSLPWTATQSPCLFQVSGQGVP
GEKCEGVEPQSEDSFDIHSTPDKSMTNYVKHISESLGAQINPDISWTSSLNTPPAVPSTL
ILSKPDESPCPLSVTADRHFVFVRKLFPSLSKASSFVVPKNKTTPSVSQDAVSSEAWKCL
QTEGVCQQKPPDAVEDEVCYQAEENLDGAKNMDSAFFANSSSALRKVKPVRVKRKQLIQA
KEKRCSVKAIAVIHNSSSSEDVTADLESGRVSLTPLAKTEDPAVSQWSPLNLSEIPFCTL
ESNILTKQQQGDDTDPVQLFRPSMTITDPGFNKKKRKFVYTIPTMKRQVQEKESQSLTMD
PPFGVSDSGQEVNVQPLEKASGACCSTERNTVQNQRQNVGENLPSSGGAKVQDFDMSLLC
KEFAQDFSQGAPSGHLDKLAKATLNDFFPAACLSAIKHSKQKVKQADLQETGDIGNRRQT
CSVSNVTITDSGLQSGVTDVTHMTASSVVLPHSEIIAQSRQCMFSFTKEEIEKEHMEVEE
NATVQKCMKRPTLDSGKDSESLLKNKPTCPSSSAEEVVYKSDCISLGDQICDSLPKKTDI
YLSSAYSSGFKTASDKGIHISSANLKRAKSFFDETEGKRTLSNQSTTYDHSARHDISLSS
GSLPSKTNSNQLSHMEKTFGNVSSQLTASEKADVTELCSLLEKADSQFEFAQSKTVKQID
QDDASRSQKPHRELDPDFLAGIDFDDSFNSDGGKHSSVTEMLDKMALVSDQSTSSSTALK
NENASVTPFSENVSKDKNCHMLTGPGFHRAECGKASELNTNDPLMLALAFTTAGGNTMRV
SKKCLSKARALFADLEENPTDQKPPDNQNDPICAKTDQNYIVDFDTCKEDLKFTFKDSCH
VEKNVQDDSSKLDQFLCSNKQLSDGEKDRSKSFKNNKMDTQMFQSDFHMASGKDISISAK
CMQQADAFFKYGTVMEHEDDMSYKNIKGPPKSIENKKSFSKYTNLQTSEESNVNAGLTAL
HTKAPCVDGMNKSSNGPLALKHPETSEPFSAPADGFCTASGKKVSVSANSLKRAECLLNP
INTHEDLNVQLNQKENAKSTGNRSDEGLNAEKTGFQTASGNKVAISSAALKKAKAMLKEY
EGGDDEMGISLLHPKREAPATSPPMCNSDVSATSGKSVVPSEDLQTNTIFPEEKHEANTE
KRHCGFTTAGGAKVCVSQKNLLKAKDLFKDLDDLPLTKVMQESDAYFECDVDGSKRTSAK
SEKDSADVGEEENRGKLCPDQSVRANIFEEPIRRSAEGTSKQEKAFPQQNGGFQTASGKR
VNISSKALKRAKTLLSDCEGVENKTSSYPMQSKVGVLPCRNAGFLSGRGQPVSVSSEALE
KAKALFSDVGFSSEIPDMTMKSDKKQNGGNTKEKIHCGFTTAGGAKVHVSEKNLFKAKLL
FEDFDSSAQTSLEADVSFTKDKVCTVSSNSKRSSGSKSKALFSEGDNVYGNIFKPKPVTR
NISDEPENGFTQDLNEQVKQKEGALLQQCGGFQTASGKTVAVSSEALTRAKTLLNENEGA
EDNIHVLLPFSKIPNTEAFPLKNGFSSASGKPVTFSSETLQKAKAFFSDTSLSTNIPSLQ
DSKRSDEKHAAQRKADVHCGFTTAGGGKVLISEKSLLKAKHFFKEFTDGEHHGSFSHSPR
PQNPAKQELSEAKDVERTNNVAPAGDGINAKRSDPCDVRSFSTTAGVDDILEESSMLDCH
FNQMSYSKKAEVVRANESTDLNLQLLNLTGCTETQHKFIAQEALDCTKALLEDEVLAGQN
LPVTSEDTTLPPDPKLSSRSAEEDNGSRKRFLEVATCTGQPPSKRRLLDEFDRTVDSSKG
SALQPVKSSPTGFIKDRGVFKYSASLRPNITNPHSGPKHFKHTRFQNPTPPQHSAPRDGR
ASHSKMLVFVPPFIRNAIKGMPKNPEPKENSRTPVFVPPFKKQRLQDSSSKQQEEDQRHV
PSTVESNSNTYVPPAVRTQTADVVASVESENPNMSNIQGVPVNTEVNHSEAEASVVVDSF
SKNPDGHQNIELARAVQDMRIRKKKRQNIRPLPGSLFLTKTSGIARIPLKVAVNGKNPAK
YNPKQLYEYGVQKNVSEVTSETAESFCFNLLQFVKQETFIDGGGVHLADGGWLIPSNDWT
AGKEEFYRALCDTPGVDPKLISEAWVSNHYRWIVWKQASMEKSFPETMGSLCLTPEQVLL
HLKYRYDVEVDHSHRPALRKIMEKDDAAAKTLVLCVCEVVSRGHCPNMQSRSDTKTPQRA
DANTEASCAVVQLTDGWYAIRAQLDEPLTAMLHKGLLTVGVKLIIHGAQLMGSQDACSPL
EAPDSLMLKICANSSRRARWDAKLGFHRDPRPFLLPLSSLYSSGGPVGCVDVVILRSYPI
QWMERKADRGVVFRSSRAEEKELRRYNNHKQTAMEALFAKIQAEFEKEEKGNGKPQQRRQ
SISHQDFASLQDGEELYEAVGDDPAYLEVHLSEQQSETLHAYRRSLMEKKQAELQNRYRR
ALEAEDNKLSCPKREVTPVWRLYIADSKAQSNHVYQLNLWRPSSDLQSLLKEGCRYKVYN
LVASAVQKRSGIETLQLTGTKKTQFQDLQVSQEWLSDHFQPRVSTNFVNLQNAEFLSLCE
EVDLTGYVISVIDEHGSSPAFYLADGKLNFVKVRCFNSLSQASLDDVIKPRTFLALSNLQ
LRGQSLHPTPVVYAGDLTVFSTNPKDLHLLESLNQLKTLVQSRDNFFEIAEEKLSLLNKS
DGTKFISSPSLQLQTPVSEADRKQDSKTSVTFQKLDQSLGSFTPISRNPPAGTSSSEQDT
KSLKRQRALDYLSRIPSPPPLSHLASTVSPFVNKTFNPPRRSGLPSTSKSAQAVLKPTTS
LLEAGWVNDEELAMIDTQALLVGDLL
NT seq
8901 nt
NT seq
+upstream
nt +downstream
nt
atggatttatccgtaaaaaccatgcacgacacattcaaagatgaaatctggaaagagctg
gggcctttaaacccaaactggtttgaagtactgactgctcaaacgtctcctaaggagagg
attgtcgctgataaggatgacctgtgtgctaatcaagaggggaactttaaaacaccttct
gagaaaactgcagtggacagtcagctgttttcaacccccaacgttttcagacacagtcga
gttgtgtctcctgaaaccaaggatgagcagtcgttcacaaatacacatggaagaggatct
ttaccatggacggcaacacaaagtccctgcttatttcaggtgtcaggacagggtgtccca
ggtgagaaatgtgaaggtgtcgagcctcagagtgaggacagttttgatatacacagtaca
ccagacaagtctatgacaaactacgtcaagcatatttctgaaagtcttggcgctcagatt
aatcccgacatttcatggacaagttctttgaatacaccaccagcagtgccatccaccctg
attttatctaaacctgatgaaagtccctgtccattgagcgttactgcagacagacatttt
gtttttgtacgaaagcttttcccttcactttcaaaagcatcatcatttgtggtaccaaaa
aacaaaaccacgccttctgtttcccaagatgccgtttcttctgaggcctggaaatgcctt
cagaccgagggtgtttgccaacaaaaacctccagatgctgttgaagatgaagtttgttac
caagcagaagaaaaccttgatggagctaaaaatatggactccgctttctttgccaacagt
agttcagctctgagaaaagtgaaaccagtcagagtcaaacgtaaacaactcattcaggca
aaagagaagagatgcagtgttaaagctatcgcagtaatacacaattcttcatccagtgaa
gacgtaacagctgatctggaatctggtagagtatccttaaccccactggcaaaaactgaa
gatcctgcagtcagtcagtggtctcctttaaacttatctgaaatcccattttgtacactg
gagagcaatattttgactaaacaacagcaaggtgatgacacagatcctgtccagctcttc
agaccatcaatgacaatcacagaccctggatttaataagaaaaagagaaaatttgtttat
acaataccaactatgaaaagacaagttcaagaaaaagaaagtcagtctctaacgatggac
ccaccatttggagtttcagattctggacaagaagtgaatgtccaaccactggagaaagcc
tctggtgcgtgctgcagcacagagaggaatactgtccagaatcaaagacaaaatgttgga
gaaaacttgccttcctctggaggagccaaagtccaggattttgacatgtctctgctttgc
aaggagtttgcacaagactttagccaaggagcaccttctggccatctagataaactagca
aaggctactttaaatgacttctttcctgcagcctgtctctcagccatcaaacattcaaag
cagaaagtaaagcaagctgatctccaggaaactggtgacatcggaaacagaagacaaact
tgctccgttagcaatgttactataactgacagtggattgcagtctggtgttacagacgtc
actcatatgactgcctcatcagttgttcttccgcactcagaaatcattgctcaaagtcgg
caatgcatgttttcatttacaaaagaagaaattgagaaagaacatatggaagtagaagaa
aatgccactgtgcagaaatgcatgaaaaggccaacactggactctggtaaagatagtgaa
tcacttttaaagaacaaaccaacatgtccgtccagcagtgcagaagaagttgtgtataaa
agtgactgtatatcattaggtgatcagatctgtgacagtctgccaaagaaaactgacatt
tatctttcatctgcctattcatcaggattcaaaactgcttcagataaaggtatacacatc
tcctcagccaatctgaagagagccaagagtttctttgacgaaactgaaggtaaaaggacc
ttaagtaatcaatccaccacgtatgaccactctgctaggcatgacatcagtctgagcagt
gggtctctgccaagtaaaactaactcaaaccaactatctcacatggaaaaaacttttgga
aatgtcagttctcagttaacagcttcagaaaaagctgatgtgacagaactgtgctctctc
ttagaaaaagctgacagtcagtttgaatttgctcagtccaaaactgtaaaacagatagat
caagatgatgccagtcgttcacaaaaacctcacagagaacttgacccagattttcttgct
gggatagattttgatgacagcttcaattctgatggtggaaagcactcctcagtcactgag
atgcttgacaagatggccttggtttcagatcagtccacgtcatcgtcaactgcactgaaa
aatgagaacgcctctgtaactcctttctccgagaacgtttctaaagacaagaattgtcat
atgttaactggacccggttttcaccgagctgagtgtggtaaagcaagcgaactgaacacc
aacgatcctttgatgcttgctctggcatttacaacagcaggaggaaatacgatgagagtt
tcaaaaaagtgtctgagcaaagccagagctttgtttgcagatttggaggagaatccaaca
gatcagaaaccaccagacaaccaaaatgatccaatttgtgccaaaaccgatcaaaactac
atcgtggactttgacacgtgcaaggaggatttgaagttcaccttcaaggatagctgtcat
gttgagaagaatgttcaggatgattcttccaaactggaccagtttttatgttcaaacaaa
caactgagtgatggagagaaggatcgtagcaagagttttaaaaataacaaaatggacaca
caaatgtttcaaagtgatttccacatggctagtggaaaagacatctctatttctgcaaag
tgcatgcaacaagcagatgctttttttaaatatggtactgtaatggagcatgaagatgac
atgtcttataaaaacataaaagggccacctaaaagcattgaaaataagaaaagtttttca
aaatacacaaacttacagacctctgaggaatctaatgtaaatgcaggactgactgcactt
cacactaaagcaccatgtgtggatggaatgaacaagagcagtaatggtccacttgctctg
aaacatccagagacttcagagccattttccgcacctgctgatggattctgtacagccagt
gggaagaaagtctccgtgtcagctaattcgttgaaaagagctgaatgtcttttgaatcca
atcaatacacatgaggacctaaacgtacaacttaaccaaaaggaaaatgcaaaaagtaca
ggaaatcgcagtgatgagggtttaaacgcagaaaaaacaggatttcagacagctagtggg
aacaaagttgccatttcatcagcagctctaaagaaagcaaaagctatgttaaaagaatat
gaaggaggagatgatgaaatgggtatttccttactgcatcccaaaagagaagctcctgct
accagtccaccaatgtgtaactctgatgtttctgcaaccagtggtaaatcggtggtgcca
tctgaggacttgcagactaatacgatcttccctgaggaaaaacatgaagccaatacagag
aaaaggcactgtggatttacaactgcaggtggagcgaaagtttgcgtatcccaaaagaat
cttttaaaagccaaagatcttttcaaggaccttgatgatctgcctttaactaaagtcatg
caagagtctgatgcatattttgaatgtgatgtggatggcagtaagagaacatctgcaaaa
agcgagaaagatagtgcagatgtgggtgaggaggaaaatcgtggcaaactttgtccagat
caaagtgtgagggcaaacatttttgaagaacctattagaagatctgctgagggcacaagc
aaacaagaaaaggccttcccacaacagaacggtggatttcagacagccagtggaaaaaga
gtcaacatctcatccaaagctttaaaacgagcaaaaaccttgttaagtgattgcgaagga
gttgagaataaaacaagttcatatccaatgcagtctaaagttggtgttctgccatgcagg
aatgctggatttctttctggccgtggtcaacctgtatccgtttcatctgaggcccttgaa
aaagccaaagcacttttcagtgatgttggtttttcttcagaaatcccagacatgactatg
aaaagtgacaagaaacaaaacggtgggaacactaaagagaaaatacattgtggcttcaca
actgcaggtggcgctaaagtccacgtgtctgaaaaaaatcttttcaaagcaaaacttctc
tttgaagactttgacagttcagcacaaacaagcctagaagcagatgtttcctttacaaag
gacaaagtctgcacagtaagcagcaacagtaaaagatcatcaggaagcaaaagtaaagcc
ctttttagtgaaggtgacaatgtgtatggaaatatattcaagccaaaaccggtgacaaga
aatatttctgatgagcctgaaaatggattcactcaggacctaaatgaacaagtgaaacaa
aaagaaggtgctttacttcagcaatgtggtgggtttcagacagccagtggaaaaacggtt
gctgtatcgtctgaagctctgacaagagcaaaaaccttgttaaatgaaaatgaaggagct
gaagataacatccatgttttattgccattttccaagattcctaacactgaagcgtttcct
ttgaaaaatgggttttcttcagccagcggtaaacctgtaacattttcatctgagacttta
caaaaagctaaagcttttttcagcgacaccagtttgagtacaaacatcccaagtcttcaa
gactcaaagaggagtgatgagaaacatgctgctcaacgtaaagctgatgtacactgtggt
tttacgactgcaggaggaggaaaagtcctcatttcggagaaaagtcttttaaaggcaaaa
catttttttaaagaatttactgatggggagcaccacggttcattctcacactcaccaaga
cctcaaaacccagcgaaacaggagttatcagaagcaaaagatgtggaaagaactaataat
gttgcccctgctggtgatgggattaatgcaaagagaagtgatccatgtgacgtaaggtca
ttttctactacagcaggagtagacgacattcttgaggagtcaagcatgctggattgtcac
tttaatcagatgagctacagcaagaaagctgaagttgtgagagcaaatgagtctacagat
cttaacttgcagttactaaacctcacgggctgcacagaaactcaacataagtttattgca
caagaagctctggactgcactaaagccctgctggaagatgaagttctggctggccagaat
ctcccagtgacttcagaagatacaacactgccacctgacccgaagttaagcagcagatct
gcagaggaggacaatggaagcagaaaaagatttttggaagttgcaacttgcactggtcag
cctccttctaaaagaagattactggatgaatttgatcgaactgttgatagttcaaaaggt
tccgctctccagcctgtaaaaagttctccaactggttttataaaagacaggggagttttc
aagtacagtgcctcacttcgtccaaacatcacaaaccctcacagcggtccaaaacacttc
aagcacacaagattccaaaacccaacaccacctcaacattcagccccaagagatggcaga
gcatcacactcgaagatgctggtttttgttccaccatttatcagaaatgcaataaaaggg
atgcccaagaatccagagcccaaagaaaacagcagaacgcctgtgtttgttcctccattc
aaaaagcaaagattgcaagacagctcctctaaacaacaagaggaggatcaacgacatgtt
ccctctacagtagagtccaacagcaacacctatgtaccacctgcagtaagaactcagact
gcagatgttgttgcttcagttgaatctgaaaacccaaacatgtcaaatattcaaggtgtt
cctgtaaacactgaggtaaaccattctgaagcagaggcatcggttgtagtcgactcattt
tccaaaaacccagatgggcatcagaacattgagctggcacgggctgtgcaggacatgagg
atcaggaaaaagaagcggcagaacattcgacctctaccggggagcttgtttctgacgaag
acctccggcattgcaaggatcccgttaaaagttgcagtgaatggaaagaacccggcaaaa
tacaaccccaaacagctttatgagtacggagtccaaaagaatgtttctgaggtcacaagt
gagactgcagagtcgttttgcttcaatttgctgcagtttgtcaaacaggaaacctttatc
gatggagggggtgttcaccttgctgacgggggatggttaatccccagcaatgattggaca
gcaggaaaggaagaattctatagagctttatgtgacactcctggtgtggatcctaaactg
attagtgaggcgtgggtgtccaatcactacagatggatcgtgtggaagcaggcctccatg
gaaaagtcttttccagaaacaatgggcagcctttgtctcactccggagcaggttcttcta
cacctgaagtacagatacgatgtggaggtggaccacagccacaggccggctctgaggaag
atcatggaaaaggacgacgcagcagccaaaactctggttttatgtgtttgtgaggtagtt
tccagaggtcactgtccaaacatgcagagtcgcagcgacactaaaacacctcaaagagct
gacgccaacacagaagcatcgtgtgcggtcgtccagcttacagatggttggtatgccatc
agagctcagctggacgaacctttgactgccatgcttcacaaaggtctactgactgttggt
gtcaagctgatcatccatggggctcagctaatgggatcacaagatgcttgttcccctctg
gaggcacctgattccctcatgttaaagatttgtgccaatagcagcagacgtgcacgatgg
gatgctaagctgggatttcatagagacccacggccattcctgctcccactctccagttta
tacagcagtgggggacctgtgggatgtgttgatgtcgttattctgagaagctaccccata
cagtggatggagagaaaagcagatagaggtgttgtgttccggtcctctcgagcagaagag
aaggagttgagacgatacaacaaccacaaacaaacggccatggaggcgctctttgccaag
attcaagctgaatttgaaaaagaggagaaagggaacggcaaacctcagcagagaaggcag
tcaatcagccatcaagattttgcaagtctccaggatggagaggagctgtatgaagcggtt
ggagatgacccagcttacctagaggtgcacctaagtgaacaacagtcggagactcttcat
gcctacaggcgttcgttgatggagaagaagcaagctgagctgcagaatcggtatcgccga
gctttagaggcagaggacaacaaactgagctgtcccaaaagggaggtcacgcctgtgtgg
agactgtacatcgctgactccaaggcccaatccaaccacgtttatcagttgaatctttgg
cggccttcctcagaccttcagtctttactgaaggaaggctgtcggtacaaggtttataac
ctggttgcctcagctgtacagaaacgaagcggcattgaaacacttcagctcactgggaca
aagaaaacacagtttcaggacctacaggtttcccaagaatggctgtcggaccatttccaa
ccaagagtctctacgaactttgtgaatcttcaaaatgctgaattcctgtctctgtgtgaa
gaagttgatctcacaggatatgttatcagcgtcatcgatgaacatggctcctctcctgct
ttttatttggctgatgggaaactgaactttgtgaaggtgcgctgtttcaacagtttgtct
caggccagccttgacgatgtgataaagccacgtacctttttggctctgagcaacctgcag
ctcaggggtcagtccttacatccaactcctgttgtgtacgctggggatctgacagtcttc
tctacaaatcccaaggatcttcatctcttggaatccctcaaccaactcaaaaccctggtc
cagagtcgagacaacttttttgaaattgctgaagaaaagctttcacttttaaacaagtcc
gacggcacaaagttcatctcctctccatcactgcaactacagaccccagtctctgaagca
gacaggaagcaagactcaaagacaagtgtgacatttcagaaactagaccaaagcctcggg
tcgtttacacccatcagcaggaaccctccggcaggaacatcttcatctgaacaggacacc
aaaagcctgaaaagacaaagagctctggattatttgtctcgaatcccgtctccaccacct
ctgtctcatctggcctcaactgtctctccatttgtaaataaaacatttaacccccctcgg
aggtctgggctgcccagcacgtcaaaatctgctcaagctgtactaaaacccaccacctct
ctgttggaggctggatgggtgaacgatgaagaactggctatgattgatactcaggctctg
cttgttggtgatttattgtag
DBGET
integrated database retrieval system
