KEGG   Nematolebias whitei (Rio pearlfish): 119411647
Entry
119411647         CDS       T08042                                 
Symbol
cstf1
Name
(RefSeq) cleavage stimulation factor subunit 1
  KO
K14406  cleavage stimulation factor subunit 1
Organism
nwh  Nematolebias whitei (Rio pearlfish)
Pathway
nwh03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:nwh00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    119411647 (cstf1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nwh03019]
    119411647 (cstf1)
Messenger RNA biogenesis [BR:nwh03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     119411647 (cstf1)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd WD40_Gbeta CSTF1_dimer Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_EML ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_NOL10_N Beta-prop_Aladin NBCH_WD40 WDR90_beta-prop_4th PAC11 ASA1 Beta-prop_SCAP Beta-prop_VPS8 CFAP251_N Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_NUP159_NUP214 Beta-prop_NWD2_C Beta-prop_IFT140_1st DSE1_N Ge1_WD40 PROPPIN Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_WDR11_1st
Other DBs
NCBI-GeneID: 119411647
NCBI-ProteinID: XP_037534479
LinkDB
Position
7:complement(4764217..4774903)
AA seq 431 aa
MFRPKPTLKDRQHLYKLIISQLLYDGYTSIANSLMNEVKPQSVVSPSEQLMQLAKMGMEN
DDSTVQYAIGRSDTVAPGIGIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDG
QLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLA
FHPSEQILASGSRDYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFLLVGTQHPT
LRLYDANTFQCFVSCNPLDQHTDTISSVSYNPSANSYVSCSKDGSIKLWDGVSNRCVSTF
EKAHDGAEVCSAIFSKNSKYILSSGKDSVVKLWEISTGRTLVKYTGAGLSGRQMHRTQGV
FNHTEDYVLLPDERTISLCCWDSRTAERKNLLSLGHNNIVRAIVHSPTNPGFMTCSDDFR
ARFWYRRTTTD
NT seq 1296 nt   +upstreamnt  +downstreamnt
atgttccggcccaaaccgaccctgaaggaccgacagcacctgtacaagctcatcatcagt
cagctgctctatgacggatacaccagcatcgccaacagcctcatgaacgaggtgaagcca
cagagcgtggtgtctccatccgagcagctcatgcagctggccaagatggggatggagaat
gatgacagcactgttcagtacgctattgggcgctctgatacagtggctccgggtattggc
attgatctagaatttgatgctgatgtccagaccatgtccccggaggcttcagagtatgag
acctgctatgtcacatctcataagggcccctgccgtgttgccacgtacagtcgggatggg
cagcttattgccactggttctgctgatgcctccatcaagattctggatactgaacgcatg
ctggccaaaagtgccatgcccattgaggtcatgatgaacgaaactgctcagcagaacatg
gagaaccaccctgtgatccggactctctatgaccatgttgatgaagtcacctgcctcgcc
ttccatccctctgaacagattctggcctcgggttccagagattacaccttgaaactcttt
gattattcaaaaccttcagcaaagagagcctttaaatacatacaggaagcagaaatgttg
cgttcaatctccttccacccctctggtgatttcttgctggtgggaacacagcaccccacc
ctacgtctctacgacgccaacactttccagtgctttgtgtcctgcaacccactagatcaa
cacacggacaccatcagcagcgtcagctacaacccgtccgccaacagctatgtctcctgc
agcaaggacgggagcatcaaactgtgggatggcgtctccaaccgctgcgtgtctacgttt
gagaaggcacacgatggagcagaggtctgctccgccatcttctccaagaactctaagtac
attttgtctagtggaaaagactccgttgtgaaactgtgggagatctctacaggccgaaca
ctagtgaagtacacaggtgcgggactcagtggccgtcagatgcatcggactcagggcgtg
ttcaaccacacagaggactacgtgctgttgcccgatgagcgcaccatcagcctctgctgc
tgggactcgagaacggctgagaggaagaacctgctgtccttgggtcacaacaacatagtc
cgcgccatcgtccattctcctactaaccctggcttcatgacctgcagtgatgacttcagg
gcccgcttctggtaccgtcgcaccaccacagactga

DBGET integrated database retrieval system