KEGG   Nematolebias whitei (Rio pearlfish): 119413927
Entry
119413927         CDS       T08042                                 
Name
(RefSeq) RNA-binding protein MEX3B
  KO
K15686  RNA-binding protein MEX3 [EC:2.3.2.27]
Organism
nwh  Nematolebias whitei (Rio pearlfish)
Brite
KEGG Orthology (KO) [BR:nwh00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nwh03019]
    119413927
   04121 Ubiquitin system [BR:nwh04121]
    119413927
Enzymes [BR:nwh01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     119413927
Messenger RNA biogenesis [BR:nwh03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     119413927
Ubiquitin system [BR:nwh04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    119413927
SSDB
Motif
Pfam: KH_1 KH_Vigilin zf-C3HC4_3 KH-I_KHDC4-BBP zf-C3HC4 zf-RING_2 KH_2 KH_DEAH11_2nd zf-RING_4 Prok-RING_4 zf-P11 zf-RING_5 zf-RING_UBOX
Other DBs
NCBI-GeneID: 119413927
NCBI-ProteinID: XP_037536925
LinkDB
Position
8:17545403..17552796
AA seq 668 aa
MMPSSTSLLEADEGESEVPPPLVHAFAGMGLEEHHGTQNQTPEQEVESISFPHHHQLPSV
SQFSFLDTVLDLKPLPLNRRPSGDEASKTTDDEELEADDSSKAHRHHQRLPPGPNSTMMP
SGMDAETVLLYGGEERDDGGVLPPASVVMLPPGVYGELPGYEAEPSLLSRRKSVNTTECV
AVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEQPVFVVTGRKEDVAMAKREILSA
AEHFSLIRASRNKAGPLTAVSDLGAPTLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQQ
THTYIVTPSRDKEPVFEVTGMPENVDRAREEIEAHIALRTGTCGGIEVPGVDNSDFQFNG
TDVSFDTSAVPAGLGEAGWLHAGASSPGGGSAPPATISSTQRVNSNMSGAVRMSSTYRND
SSSSLGSGSSSADSFYSGGNGNRMADFSPTFPFNANSNNNNNNSGGSTNFWFGDKLLGVG
SEELLILGGRGSSGFDPLTISTAHTSHSAAQSHIWSSFVDNQSLQALDSLQSQTSQPGTP
RLSPTFSGTEALEHPQAQRVHRRPFGSAGTLDAHRIPSYSSAFSSSSESTTSSSPPDSSF
SYRPGLGSSGRGQEMCIQCMDNQVNAALVPCGHNLFCVDCATQICQGSEAVCPVCLSPAT
QAIQLRNM
NT seq 2007 nt   +upstreamnt  +downstreamnt
atgatgcccagtagcacgtctttgctggaggccgatgagggagagtccgaggtcccaccg
ccgctagtacacgctttcgccggtatgggcctcgaggagcaccacggcactcaaaaccag
acccccgaacaagaagttgaaagtatttctttcccccaccaccatcagctaccctcggtt
tctcaattcagcttcctcgatacggtcctcgacttgaagcctttgccgctgaatcggcgg
ccgtcgggagatgaggcgagcaagacgacggacgacgaagagctcgaagcggacgactct
tcgaaggcccaccgccatcatcagcgcctcccgcccgggccgaacagcaccatgatgccg
tccggaatggatgccgagacggtgttgctgtacggcggggaggagcgggacgatggcggc
gtcttacccccggctagcgtggtgatgctaccacccggcgtgtacggggagctaccgggt
tacgaggccgagccttcgctcctgagccggcgaaagagtgtcaacacgaccgagtgcgtg
gcggtgccgagctccgagcacgtcgcagagatcgtgggcaggcagggctgtaagatcaag
gcgcttcgagccaagacaaacacctacattaagacgccggtgaggggcgagcagcctgtc
tttgtcgtgacgggacgcaaagaagatgtggccatggctaagagggagatcctgtctgca
gccgagcacttctcgctcatcagagcttctcgaaacaaagcggggcccctgacagctgtt
agcgatttaggggcccccactctacctggacagacgaccattcaggtgcgggtgccgtat
cgcgttgttggattggttgtgggcccaaaaggtgcaaccatcaagcgcatccagcagcag
acccacacctacatcgtgactccaagtcgcgataaagagcccgtttttgaggtcacgggg
atgccggagaacgtggaccgggcgagggaagaaatagaggcgcacatcgccctccgcact
ggaacctgcgggggcattgaagttccaggtgtggataacagtgattttcagttcaacggc
acagacgtcagctttgacacttctgcagttccagctgggttgggggaggctggatggctc
catgcaggcgcatcatcaccaggcgggggaagcgcgcctcccgcgaccatcagcagcact
cagcgggtcaacagcaatatgagtggagctgtcaggatgtcttccacctaccgcaatgac
agctctagctcactgggcagcggctccagctcggctgattctttctacagcggggggaac
gggaaccggatggcagatttcagcccaacttttccgttcaacgccaactccaacaacaac
aacaacaacagtggcggcagcacaaacttctggtttggtgataaactccttggcgtgggg
tctgaggagctcctcatcctgggcggtagaggctcctcgggatttgatccgttaaccatt
tccactgcccatacctcgcactccgctgcacagtcgcacatctggagttcgttcgtggac
aaccagtctcttcaggccttggattctttgcagtctcagaccagccagcccggtacgccc
cgcctctctccaaccttctctgggactgaagccttggagcaccctcaggcccagcgtgtt
cacagaaggcctttcgggtcagccgggaccctcgacgcccacaggatcccctcgtacagc
tcggccttctcctcctccagtgaaagcaccacctcctcctctcctcctgactcctctttc
tcctatcgtccgggcctcgggtcatcagggagggggcaggagatgtgcatccagtgtatg
gataaccaggtgaacgccgccttggttccatgcggccataacctcttctgtgtagattgt
gccacccagatatgccaaggctcagaggctgtgtgccccgtgtgcctgtccccggccaca
caggccattcagctccgcaatatgtga

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