Nematolebias whitei (Rio pearlfish): 119414340
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Entry
119414340 CDS
T08042
Symbol
wdr33
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33
KO
K15542
polyadenylation factor subunit 2
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119414340 (wdr33)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nwh03019
]
119414340 (wdr33)
Messenger RNA biogenesis [BR:
nwh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
119414340 (wdr33)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40
Beta-prop_WDR5
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WDR55
WD40_Gbeta
Beta-prop_IFT140_1st
EIF3I
Beta-prop_Aladin
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
eIF2A
Beta-prop_Vps41
WD40_MABP1-WDR62_1st
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_SCAP
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_WDR41
Beta-prop_WDR11_2nd
PEP5_VPS11_N
Ge1_WD40
Motif
Other DBs
NCBI-GeneID:
119414340
NCBI-ProteinID:
XP_037537361
LinkDB
All DBs
Position
9:complement(51492584..51519261)
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AA seq
1051 aa
AA seq
DB search
MATDVGSPQRFFHMPRFQHQAPRQVFYKRPDMAQQQAMQQLTFDGKRMRKAVNRKTIDYN
PSVIRYLENRLWQRDHRDFRAIQPDAGCYNDLLPPLGMLNNPMNAVTTKFVRTSTNKVKC
PVFVIRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
HGGYVKYWQSNMNNVKMFQAHKEAVREASFSPTDNKFATCSDDGTVRIWDFMRCHEERIL
RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKMGQSLATLHAHKNTVMEVKWNLNG
NWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWN
TGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHSSKFWTRNRPGDKMRDRYNLNLL
PGMSEDGMEYDDLEPNSMAMIPGMGIPEQLKAAMEQEQSSKEAAPEVEMSIPGLDWGMDE
VMGKDAKKVPQKKVPYAKPIPAQFQQAWAENKVPMMPQSADLIKDRSMDLKVDMKKKTQA
ELEQEMAALQYTNPQLLEQMKMNQMNSDGNMGPPQGPGSMPSFQGPGGPGGPGPPGSQGF
PPNMPPQQMSNMGPPMGPGGMQTSFMHPGQMGPPSGPPPHQGPHQGMMGPSDMQESQRHP
GPPRNMGPQGPHGMGPRGMQGPPGGMMGPPPRGMGPRDPQGPPPQGGMMPPQGNMMGPQD
PMQGGVMGPPPRTHSNVPNNYRVGNMQGSPGGMHGPPSGMLGPPGNMQGPTYMQHQGQNS
GPMMHGMGPQGPNNKDPRGPPPNHHLGPPDRQGPGGIGGPDQGSGSYWGDNQQGRRGPQD
FEGGQDFHAREEDGWRPGPSPGFQGGGHRGVGGNWGPDERFSGRDFRGRREDRFRGGGPG
RPGGRSYTDEFGGQEEGFDGAEEMGRGWESGGRGRPPRGGGPPRGGHDGYRDDGSSPGGR
ERPSSLQGMDMASLPPRKRPWQDGPGTGGDLRERESPGGDGGRFPQRDDGGYPPSGRGGR
GGWGPGGGPGPGSWRGGPPPRGGPRGGGRGR
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagacgtgggctcgccacagcggttcttccacatgccgcgtttccagcaccag
gcgcctcgtcaggttttctacaaacggccggacatggctcagcagcaggccatgcagcag
ctcaccttcgacgggaagcgcatgaggaaggccgtgaaccgcaagaccatagactacaac
ccgtctgtcatcagatacctggagaaccgtctgtggcagcgggatcaccgagacttcaga
gccatccagcctgatgccggctgttacaatgacctccttcctcctcttggcatgttgaac
aacccgatgaacgccgtcaccacgaagttcgtcagaacctcaaccaacaaagtcaagtgt
cctgtgttcgtcatcaggtggactcctgaagggcgccggctggtgactggagcctccagc
ggagagtttactctttggaacggactcaccttcaactttgagaccatcctgcaggctcat
gacagtccggttcgggccatgacctggtctcacaacgacatgtggatgctgacggcagac
cacggaggctacgtaaagtactggcagtccaacatgaacaacgtgaagatgttccaggct
cacaaggaggccgttagagaagccagcttttctccaactgacaacaagtttgccacctgc
tcagacgatggtactgtccggatctgggatttcatgcgctgccacgaggagcggatcctc
cgaggtcacggagctgacgtaaagtgtgtcgactggcatccaaccaaaggtctggtggtg
tcagggagcaaagacagccagcagcctatcaagttctgggacccaaagatgggccagagt
ctggccacgctccacgcccacaagaacaccgtcatggaggtgaagtggaacctgaatggt
aactggctgctgacggcgtcacgtgaccacctgtgcaaattattcgacatccggaacctg
aaagaggagctgcaggtgttcagagggcataagaaggaggccacagctgtcgcctggcat
ccggttcacgagggtctgttcgccagcggaggctccgacggctcgctgctgttctggaac
accggtgtggagaaggaggttgggggcatggagatggcccatgaggggatgatctggagt
ctggcctggcacccactgggtcacatcctgtgttctggttccaacgaccacagcagtaaa
ttctggaccaggaaccgacccggggacaagatgcgggatcgttacaacctgaacctgcta
cctgggatgtcagaggacggcatggagtacgatgacctggaaccaaacagcatggccatg
attcccgggatgggaatccctgagcagctgaaggccgccatggagcaggagcagagcagt
aaagaagcagctccagaagtggagatgtccatccctggactggactggggcatggacgag
gtgatgggcaaagacgccaagaaggttcctcagaagaaagtcccatacgcaaaacccatc
ccagctcagttccagcaggcctgggccgaaaacaaagttcccatgatgcctcagtctgca
gacctgatcaaagaccgaagcatggacctgaaggtggacatgaagaagaagacacaggcg
gagctcgagcaggagatggcagcgctccagtacaccaacccccaactgctggagcagatg
aagatgaaccagatgaactcagacgggaacatggggcccccacagggacctggctccatg
ccttcattccagggccccgggggtcctggtggtcctgggcctcctggctcacaggggttt
cctccaaacatgcctcctcagcagatgtccaacatggggcctcctatgggccctggaggg
atgcagacatctttcatgcaccctggacaaatggggcccccctctggacccccacctcat
cagggaccccatcagggcatgatgggaccttcagacatgcaagaatcacagagacatcct
ggccccccaagaaacatgggccctcagggtcctcatggtatgggacccagagggatgcag
gggccccctggggggatgatgggcccccctcctcgaggaatgggtccaagggaccctcaa
ggaccacccccacagggtggaatgatgccacctcaaggaaacatgatggggccccaggac
ccaatgcagggtggagtaatggggcccccaccacggacacacagcaacgtgcccaacaac
tacagggtgggcaacatgcaggggtcccctggagggatgcatgggccccctagtgggatg
ctgggacccccgggtaacatgcaggggccaacgtacatgcagcaccagggtcagaactcg
gggcccatgatgcatgggatgggcccacaggggcccaacaacaaagaccctcgggggcca
ccacccaaccaccacttgggtcctcctgaccggcagggtcctggtggtattggaggacct
gaccagggttcaggctcttactggggagacaaccagcaaggacgacgtggcccgcaagac
tttgaagggggacaggacttccatgcccgagaagaggatggctggagaccaggacctagt
ccaggattccaagggggaggtcacagaggggtcggaggaaactggggccccgatgagcgc
ttcagtgggagggatttcagaggacggcgggaggacaggtttcgaggaggtgggcccggt
agacctggggggcggagctacactgatgagtttggaggtcaggaggagggctttgatggt
gcagaggaaatgggccgaggttgggaatctggaggtcgcggaagaccgccgagaggagga
ggtccaccgagaggaggccatgatggttaccgggacgacggctcgtctccagggggccgc
gagcgtccctcgtctctgcagggtatggacatggcgtctctgcccccccggaagcgtccg
tggcaagacgggccaggaacgggaggagacctccgagagcgcgagtcccctggaggcgat
ggaggtcgttttcctcagagggatgacggtggctatcctccatctggtcgaggtggacgg
ggtggctggggtcctggaggaggtccaggaccgggttcgtggagaggaggacctccaccg
agaggagggccaagaggcggtgggcggggacgatag
DBGET
integrated database retrieval system
