Nematolebias whitei (Rio pearlfish): 119414467
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Entry
119414467 CDS
T08042
Symbol
cop1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh04115
p53 signaling pathway
nwh04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
119414467 (cop1)
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
119414467 (cop1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nwh04121
]
119414467 (cop1)
Enzymes [BR:
nwh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119414467 (cop1)
Ubiquitin system [BR:
nwh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
119414467 (cop1)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
119414467 (cop1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_EIPR1
Beta-prop_RIG_2nd
zf-C3HC4_2
EIF3I
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
zf-C3HC4
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
zf-RING_2
Beta-prop_EML
Beta-prop_DCAF4
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_4
Beta-prop_WDR90_POC16_2nd
zf-RING_5
RING_XB3-XBAT31
WD40_RFWD3
Beta-prop_WDR35_TULP_N
WD40_like
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_IFT122_1st
Beta-prop_NUP159_NUP214
zf-rbx1
WDR90_beta-prop_4th
zf-RING_10
Beta-prop_SPT8
Sina_RING
UvrD-helicase
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
119414467
NCBI-ProteinID:
XP_037537483
LinkDB
All DBs
Position
9:22662026..22679379
Genome browser
AA seq
699 aa
AA seq
DB search
MSSSRQQQSGGGASSVPSPSSSGTGGSGSTSVTSNGNSSGNVVPTSRTLAAAGEGGSSVP
TAMPPSRSGFVPQGRPTGSSRKRSLHQAPLYNGLSNSYEDKSNDFVCPICFEMIEEAHMT
KCGHSFCFKCIRQSLEDSNRCPKCNYTVDSVDQLFPNFLVNELILKQKQRSEEKRLKLEP
HNWSPWQVFQDILNPDQENMDLANVNLMLELLVQKKKQLEAESQAAQRQILIEFLKEARR
NKREQLDQLQKELNFLEEDIKRVEEMSGIYSPIIEAECTVPNVEAPSPATSRMMEPTNYN
QPPGFGATTSGKRQTWYNSTLASRRKRLTAHFEDLEQCYFSNKMSRITDEGRNLNQLDDF
MECLSKFTRYNNVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVFEYGT
VIQDAVDIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEH
EKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVCCVKFSPTSRYHLA
FGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSASTDSQLKLWNVNKPHC
LRSFKGHINEKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDKK
EDDTNEFVSAVCWRALPDGESNVLIAANSQGTIKVLELV
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcagccggcagcagcaaagcggtgggggggcaagttcggtgcctagccccagt
agcagcggcaccgggggcagtggaagcacctccgtaactagtaatgggaattcttcggga
aatgttgtgcccacatcccggactttggcagcagccggcgagggaggctcgtcggtgcca
accgcgatgccgccgtcccggtccgggtttgttcctcagggcagaccgaccggaagcagc
aggaagaggtccctccatcaagcacctttatacaacggcctctccaactcatacgaggat
aaaagcaacgactttgtctgtccaatttgcttcgaaatgatcgaggaagctcacatgaca
aagtgcggccacagcttttgtttcaagtgtattcgccagagcttggaggacagcaatcgg
tgtcccaagtgtaactatactgttgacagcgtggatcagctgtttccaaactttcttgta
aatgaactgatccttaaacagaaacaaaggtcagaggagaagcggctgaagttagaacct
cataactggtctccgtggcaggtcttccaggatatcttgaatcccgatcaggagaacatg
gacctcgcaaacgtcaacctgatgttggaacttctggttcagaagaagaagcagctggag
gcggaatcccaagcagctcaaagacagatcctcatagagtttctgaaagaagccaggaga
aacaagagagagcagttggaccaactacagaaagagctcaacttcctcgaagaagacatc
aaacgagtcgaggaaatgagtgggatttattctccaataatagaggcggagtgtacagtg
cctaacgtcgaggctccctctccagccaccagtagaatgatggagccaaccaattacaac
cagcctccagggttcggtgcaacaacctcggggaagcggcagacctggtacaacagcact
ctggcgtcaagaagaaagagactgacggctcattttgaggatctggaacagtgttacttt
tctaacaagatgtctcgcatcacagatgaaggcaggaacctgaaccagctggacgatttt
atggagtgtttgtctaaattcactcggtacaacaacgtgaggccactggccacactttcc
tatgccagtgatctgtataacggttccagtattgtctctagtatcgagtttgaccgtgat
tgcgactactttgctattgctggggtgaccaagaagatcaaggtttttgaatatggaacg
gtcatccaggatgctgtggacatccactaccctgtcaacgaaatgacctgcaattccaaa
atcagctgtatcagctggagcagttatcacaaaaaccttctggccagtagtgattatgaa
ggcaccgtaatcttgtgggacggcttcactggacagaggtctaaagtctaccaggaacat
gaaaaaagatgttggagtgtggactttaatttaatggaccccaagctcttagcctctggt
tctgatgatgctaaagtgaagttgtggtcaaccaatcttgacaactcggtggctagtatc
gaggccaaagctaacgtttgctgtgttaaattcagcccaacctccagatatcatctggcc
tttggatgtgcagaccactgcgtccactactacgacctacgcaacactaagcagccaatc
atggtgttcaaaggccacaggaaggccgtgtcctacgccaagtttgtaaatggagaagag
attgtttctgcgtcgacagatagccagctgaagttgtggaatgtcaacaaacctcactgc
ttgcgctccttcaagggccatatcaacgagaagaactttgttgggctggcatccaatgga
gactatgttgcctgtggcagtgagaacaactccttgtatctgtactacaaaggactttcc
aagacgctgttaacgttcaagtttgacacggtaaagagtgtcctggacaaggacaagaag
gaagacgacaccaatgagtttgtcagtgccgtctgctggagggccctgccagatggagag
tcaaacgttctcatcgctgcaaacagtcaaggaacaatcaaggtacttgagcttgtctga
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