Nematolebias whitei (Rio pearlfish): 119414515
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Entry
119414515 CDS
T08042
Symbol
focad
Name
(RefSeq) focadhesin
KO
K27498
focadhesin
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nwh03019
]
119414515 (focad)
Messenger RNA biogenesis [BR:
nwh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
119414515 (focad)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Focadhesin
DUF3730
Motif
Other DBs
NCBI-GeneID:
119414515
NCBI-ProteinID:
XP_037537542
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All DBs
Position
1:complement(7227312..7406654)
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AA seq
1643 aa
AA seq
DB search
MTEGLKTRFDFSSPVIQAQAVRNLVAAVLKEKGSNGQITQSSTQGPALEVLWQQCCSDCA
PVRSACCDAVVLLADQGHADLHYILNTVLNLLPSARNVQGLIKVIGRLLQMQADQRNEES
RFTCPYSIRSSPHPFITSLENRADCWPALLLEIDDFTRQAVDRNKTSYITMLAPFLRYLY
CEPQRQPQHALLRQSLLRVLVLSKSGAGLPSASAVSGNLLLSLCQLVPHLQLDDVEAVLE
LCGFVDALLQGLLRVSGESWTRERVGLLLQLLCACQRCLKLNGDCRPLLDLMQQLLPACQ
QDLPADELMMGVALLLLEAPAAQQSNLLSLALSLVPEQDELSSWLSPVLLLPVLQLLTCS
GLTEPLADPKTNTLNSNLAHSLLQSIGKPTDKPRQPGPVLALPLSSWYSELSVALSILRN
VVHDPSAAAEWLLAVNSSLTSSQRLSPSLTLIVTHLLITGEEGVCQLALNVMQAIAAADP
CQVPSMVPVLLFKLSQEKNPSLSLAVLSCLPSLGTHKLCIPMVLQNLHMLAAAPKLRAVA
LRLMTALWKKQDRVYPELQRLLGQLESRGVVGRDTQWELILARAACLRDICRERPYQHGG
DMLAAISLTLKQSDRPDLATPAALALQGLQELCRAEVVDLISTWKSLGPELSRDARPLVV
KAIAELLSLVPQLTVKSEEYEKLKDEVVAFLWSYTTNKDAEVASCGYKALAAFPEPVHTI
LHLPETARPAVKMCGSEEDDDEKENEEEEKDLSVPGSSYVKLMALTSISVLPAFELLLTS
LVKQEMSQMPRGVYFSALRGGALRSDQGKTVAGIPTFMLKTYEKNKQPGLKPGLAAGLLL
CYELPVQTDRTGRPIERFLVSRSRSYQQTLTALIHEVNIQPSEWHRALLLPQAWRGFMSR
TFHAVLQGRRADLEMQQKQAKENPQELQYRQHCAWLWTRDQLADVIKTATKDSPVVQGNS
ILALSGLAAVLAKYENNLPTDGNGSLGAGPEFVPTASWLSMVLDTLLSIISSSYKASGQV
FSWFLHRSYSGENTASAIARSCASLALSLLVPVLVVWQRDSLVQVVSALKAGLPDSPTAD
DSQAIQFHSGLALGTVLSSLQRQRISDVSAQKDTDLLFSSLKALESCSFNPNLEYNTGCV
LGLGLVLSALCSSGELDHHVLISQALDKLLANLQDSSSGHGRMLQEVLSYSVACVGVSAF
SAGLIDASKAEEIISSLRTLTEESQQTPGFSLALGLVVHGLSVSGHGKAEELHPRLLAAW
IKILLAEGCPTMQRLAAANGLVALVGSESYLIQLKDELDLSSQQQSRLNEVIRAMTQIIT
FSGAIGLQSNSACLVGHLYLAHVSTSHSHTAVPQDFTYLSEKSVIRSIMDFITEAGKKGP
EFSHPAWVKTALTSLASVGLNFQFPPVNWSAVLSPLMRLSFGEDVQHQCVVLAASQAQSS
QSASLFLGSWLSPPLVHSLGLQTRAHLYETLGLWMKHVAEDKLQVYVETVGLQQFQDDLR
PQRLSLCRSLLQGLAQAMALPNPPNHCWTILCSTAEKIFSLLPNQIQDTEVDLYEGVSKC
LSELSDTEIDRITRVSEANMEKACFVLAYLTSRGRVPLLSLNDVIAGVVRGWPSRRVGWL
LLQCLYQSRLATSANTGQTKTEF
NT seq
4932 nt
NT seq
+upstream
nt +downstream
nt
atgactgagggtttgaaaacacggttcgatttctccagccctgtcatacaagcccaggct
gtgagaaatcttgttgctgctgtcttaaaggaaaaaggatcaaatgggcaaatcactcag
tcttccactcagggtccggcgttggaggttctgtggcagcagtgctgcagcgactgcgca
cccgtacgttcggcctgctgcgacgctgtggtgctgttagcggatcagggccacgcagat
ctgcactacatcctcaacactgtcctcaatctcctgccttctgccagaaatgttcagggc
ctaataaaagtcatcggacgactactgcagatgcaggctgatcagagaaatgaggaaagt
cgtttcacctgtccttactccatcaggagcagtcctcacccattcatcacatccctggag
aaccgagcggactgctggccagctttgctgctggagattgatgactttacccgacaggct
gttgacagaaataaaacatcttacatcaccatgctggctcccttcctccggtacctgtac
tgtgaacctcagaggcagccccagcatgcacttcttcgacagagtctgctcagggtgttg
gtcctctcaaagtctggagctggattaccgtcggcctcagcagtctctggcaacctgctg
ctctccctttgtcagctggtgccacacctgcagctggacgatgtggaggcagtcctggaa
ctgtgtgggtttgtggacgctctgcttcaaggcctcctcagggtttcgggagagtcctgg
acccgtgagcgagtgggactgctgctgcagctgctctgtgcatgccagcggtgcctgaag
ttaaacggagactgtcgaccgctcctcgacttgatgcagcagctcctgcccgcctgccaa
caggacctgccagctgatgagctgatgatgggtgtggccctgctcctgctcgaggccccc
gctgctcagcagagcaacttacttagtctagctttgagtttagtccctgagcaggacgag
ctgtcctcctggttgagtccggtcctgctccttcctgtgctccagctgctcacctgttcg
ggcctcaccgagccactggccgacccaaagacaaacaccctgaacagtaacctcgcccac
agcctgttgcagagcatcggcaaacctacagataagcctcgacagcccggcccagtattg
gcgctccctctcagctcctggtacagtgagctcagcgtggctttgtccatacttcgcaac
gtggtccacgatccatcagcggctgctgaatggctgctggccgtgaactccagcctgacg
tccagccagcgcctctcaccctccctcacactcatcgtgacccatcttctcatcacgggt
gaggagggtgtttgccagctggctctgaatgtgatgcaggccattgctgctgctgatccc
tgccaggtcccctccatggttcctgtcctgctcttcaaactgtctcaggagaaaaacccg
tctctctctcttgctgtgctcagctgcctgccgagcctcgggactcataagctctgtatc
cccatggtgctgcagaacctccacatgctggctgctgcccccaagctgagagctgtagcg
ctgcgtctcatgactgctctctggaaaaaacaggatcgagtgtacccagagctgcaacgt
ctgctgggccagctggagtccaggggagtggtggggagggacacccagtgggagctgatc
ctggcccgggctgcctgtctcagggacatctgcagagagaggccctaccagcacggaggg
gacatgttagctgccatttcactcactctgaagcagagcgaccgaccagacctggccacg
cccgctgctctcgccctgcagggtttacaggagctgtgcagagcagaggtagtggacctg
atctcaacgtggaaaagccttggacctgagctgagtcgagacgcccgtccactggttgtt
aaagccatagctgagctgctgtcgctggttccccagctcactgtgaagtcagaggagtat
gagaaattaaaagatgaggtggtcgcctttctctggagttatactacaaacaaggatgca
gaggtggccagctgtggctacaaagctttggcagcttttcctgaaccagtgcacaccata
cttcacctccctgagacagctagaccagctgtgaagatgtgtggaagtgaagaagatgat
gatgagaaggaaaacgaggaagaggagaaggatctgtcagtccctggttcatcttatgtg
aaactgatggctctaacctccatctcggttctaccagcctttgagctcctcctgacctcg
ctggttaaacaagagatgagtcagatgcctcgaggagtctacttctccgctctgagaggg
ggtgcgctgcggtcagaccaagggaagacggttgcagggatcccgaccttcatgctcaaa
acctacgagaaaaacaagcagcctggcctaaagcccggcctggcagctggtctgctgctc
tgttacgagcttcctgtgcagacggaccgcacaggaaggccaatcgagcgttttctcgtg
agccgaagccgcagctaccagcagaccctgacggcgctcattcacgaagtgaacattcag
ccgtccgagtggcaccgggctcttctcctgccccaggcatggaggggcttcatgagccgg
acgttccacgccgtcctgcagggtcgacgagctgatctggagatgcaacagaagcaggcc
aaagagaacccccaggagctgcagtacagacagcactgtgcctggctgtggaccagagat
cagctggcagatgtcatcaaaactgctacaaaggacagtccagttgttcagggaaactcc
atcctggctctgagtggtctggctgctgtcctcgcaaagtatgagaacaacctgcccact
gatggcaacggcagccttggagctggaccagaatttgttcctactgcaagctggttgtcc
atggttctggacactctgctcagcatcatcagcagcagctacaaggccagtgggcaagtc
ttctcctggttccttcatcgctcatattcaggtgagaacacagcgagtgccatcgctcgc
tcctgtgccagcctggccttgtctctactcgtcccagtgttggtggtctggcagagggac
agtctggtccaggttgtctcggcgctgaaggccggcctgccggactctcccactgccgat
gactcgcaggccattcagttccattcaggccttgccctcggcacggtgctgtccagcctg
cagcgccaacgcatcagtgacgtctccgcgcagaaggacacagatcttctcttcagctct
ctgaaagctctggagagttgctcctttaaccccaacctggagtacaacaccggctgtgtg
ttgggtctgggtctcgtgctctcagccctctgcagcagtggggagctggaccatcatgtc
ctcatcagccaagcgcttgacaagctgctggccaacctgcaggacagcagcagtgggcat
ggacgcatgctgcaggaggtgttgtcttactccgtcgcctgtgtgggcgtctctgccttc
agtgcaggtctgatcgatgcgtcgaaagctgaggagatcataagctctctgcgcaccctg
accgaggagagccagcagactccagggttctctctggctctggggttagtagtccatgga
ctgtctgtgtcgggccacggtaaagctgaggagctccaccctcgtctactggctgcctgg
atcaaaatcctcctagcagagggttgtcccacaatgcagcggctggctgctgccaacggt
ctggtggctctggttggatcggagagttacctcatccagctgaaagatgagctggacctt
tcctcccagcagcagagcagactgaacgaggttattcgggccatgacacagatcataacc
ttttctggagccattggtttgcagtccaacagtgcctgtttggtcggccatttgtacctg
gcccatgtttccaccagtcacagtcacacagcagttcctcaagatttcacatacctctca
gaaaaaagcgtcatcaggtccatcatggacttcatcacagaagctggcaaaaaaggccca
gagttttctcatcctgcttgggtgaagacagcactgacctcactggcttcagttggactc
aacttccagttccccccagttaactggagtgctgtcctgtcgcctctaatgaggctgagt
tttggagaggatgttcagcatcagtgtgtggtgttggcagcgtctcaggctcagtcttct
caaagtgcttccctctttctgggctcgtggctgtcaccccctcttgtgcatagtcttggt
ctccagacccgagcccacctgtacgagaccctgggcctgtggatgaagcatgtggctgag
gacaagctccaggtgtatgtggagactgtgggcctgcagcagttccaggatgacctccga
ccccagcgactgtctctgtgccgctctttgctgcagggccttgctcaggcaatggccctc
ccaaaccccccaaatcactgttggaccatcctctgctccactgctgaaaagatcttcagc
ctcctacccaaccagatccaggatactgaagtggatttgtatgagggtgtctccaagtgc
ctgtcggagctgtctgatactgagatcgacaggatcactcgggtttctgaggctaacatg
gagaaggcctgctttgtcctggcatacctgacctctcggggcagagttcccctcctcagc
ctcaatgatgtcatagctggggtggtccgtggttggccgagtcgcagagtgggatggctc
ctcctgcagtgtttgtatcagagccgcctggccactagcgccaacacaggtcagaccaaa
acagagttctga
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